EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YGL173C (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: DST2|RAR5|SEP1|SKI1|XRN1
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 4587
Position: chrVII:175527-180113
Accession: S000003141
RBP type: canonical RBP
Summary: Evolutionarily-conserved 5'-3' exonuclease%3B component of cytoplasmic processing (P) bodies involved in mRNA decay%3B also enters the nucleus and positively regulates transcription initiation and elongation%3B plays a role in microtubule-mediated processes%2C filamentous growth%2C ribosomal RNA maturation%2C and telomere maintenance%3B activated by the scavenger decapping enzyme Dcs1p

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YGL173C_mRNA	XRN_N	PF03159.18	3.4e-96	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl.PAR_CL & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	MS & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YGL173C_mRNA	-	4587	-	YGL173C_mRNA	1528 (aa)	-	P22147

Gene Model

Click here to download YGL173C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YGL173C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YGL173C	XRN1	81	34.513	ENSG00000114127	XRN1	100	59.813	Homo_sapiens
YGL173C	XRN1	73	53.261	ENSAPOG00000000622	xrn1	87	47.170	Acanthochromis_polyacanthus
YGL173C	XRN1	73	53.951	ENSAMEG00000012538	XRN1	66	53.951	Ailuropoda_melanoleuca
YGL173C	XRN1	73	52.033	ENSACIG00000001057	xrn1	74	32.798	Amphilophus_citrinellus
YGL173C	XRN1	73	52.989	ENSAOCG00000014097	xrn1	87	53.383	Amphiprion_ocellaris
YGL173C	XRN1	73	52.989	ENSAPEG00000006620	xrn1	74	52.989	Amphiprion_percula
YGL173C	XRN1	74	49.745	ENSATEG00000009752	xrn1	76	33.051	Anabas_testudineus
YGL173C	XRN1	79	33.949	ENSAPLG00000004905	XRN1	66	55.556	Anas_platyrhynchos
YGL173C	XRN1	73	54.496	ENSACAG00000004985	XRN1	64	54.496	Anolis_carolinensis
YGL173C	XRN1	81	34.591	ENSANAG00000029013	XRN1	95	54.496	Aotus_nancymaae
YGL173C	XRN1	74	52.717	ENSACLG00000004806	xrn1	70	33.153	Astatotilapia_calliptera
YGL173C	XRN1	70	50.949	ENSAMXG00000019370	xrn1	95	64.078	Astyanax_mexicanus
YGL173C	XRN1	73	54.768	ENSBTAG00000011524	XRN1	67	54.768	Bos_taurus
YGL173C	XRN1	82	34.262	WBGene00012730	xrn-1	94	32.526	Caenorhabditis_elegans
YGL173C	XRN1	81	34.591	ENSCJAG00000001872	XRN1	69	54.496	Callithrix_jacchus
YGL173C	XRN1	73	54.496	ENSCAFG00000007783	XRN1	66	54.496	Canis_familiaris
YGL173C	XRN1	81	34.355	ENSCAFG00020009120	XRN1	88	52.589	Canis_lupus_dingo
YGL173C	XRN1	73	54.496	ENSCHIG00000019192	XRN1	66	54.496	Capra_hircus
YGL173C	XRN1	73	54.223	ENSTSYG00000002705	XRN1	67	54.223	Carlito_syrichta
YGL173C	XRN1	81	34.513	ENSCCAG00000034800	XRN1	83	54.496	Cebus_capucinus
YGL173C	XRN1	81	34.434	ENSCATG00000041794	XRN1	67	54.496	Cercocebus_atys
YGL173C	XRN1	73	54.496	ENSCLAG00000001451	XRN1	82	54.496	Chinchilla_lanigera
YGL173C	XRN1	81	34.434	ENSCSAG00000011265	XRN1	66	54.496	Chlorocebus_sabaeus
YGL173C	XRN1	69	34.483	ENSCSAVG00000008584	-	76	34.296	Ciona_savignyi
YGL173C	XRN1	81	34.434	ENSCANG00000037495	XRN1	88	54.496	Colobus_angolensis_palliatus
YGL173C	XRN1	73	54.223	ENSCGRG00001019411	Xrn1	91	54.223	Cricetulus_griseus_chok1gshd
YGL173C	XRN1	73	54.223	ENSCGRG00000012464	Xrn1	91	54.223	Cricetulus_griseus_crigri
YGL173C	XRN1	63	53.261	ENSCSEG00000021285	xrn1	93	63.107	Cynoglossus_semilaevis
YGL173C	XRN1	69	52.446	ENSCVAG00000013089	xrn1	98	52.446	Cyprinodon_variegatus
YGL173C	XRN1	73	54.076	ENSDARG00000091652	xrn1	98	38.657	Danio_rerio
YGL173C	XRN1	73	54.496	ENSDORG00000013833	Xrn1	66	54.496	Dipodomys_ordii
YGL173C	XRN1	71	50.811	FBgn0020261	pcm	70	50.811	Drosophila_melanogaster
YGL173C	XRN1	73	54.768	ENSEASG00005002687	XRN1	89	54.768	Equus_asinus_asinus
YGL173C	XRN1	73	54.768	ENSECAG00000008301	XRN1	67	54.768	Equus_caballus
YGL173C	XRN1	72	53.533	ENSELUG00000000169	xrn1	66	53.533	Esox_lucius
YGL173C	XRN1	73	48.229	ENSFCAG00000027589	XRN1	80	54.496	Felis_catus
YGL173C	XRN1	73	54.768	ENSFALG00000007021	XRN1	63	54.768	Ficedula_albicollis
YGL173C	XRN1	73	54.768	ENSFDAG00000020494	XRN1	82	54.768	Fukomys_damarensis
YGL173C	XRN1	69	53.533	ENSGMOG00000006396	xrn1	65	53.533	Gadus_morhua
YGL173C	XRN1	81	34.254	ENSGALG00000002706	XRN1	65	55.041	Gallus_gallus
YGL173C	XRN1	81	32.683	ENSGACG00000014328	xrn1	68	33.307	Gasterosteus_aculeatus
YGL173C	XRN1	81	34.066	ENSGAGG00000017535	XRN1	71	33.621	Gopherus_agassizii
YGL173C	XRN1	81	34.434	ENSGGOG00000008047	XRN1	67	54.496	Gorilla_gorilla
YGL173C	XRN1	74	51.762	ENSHBUG00000005908	xrn1	87	48.327	Haplochromis_burtoni
YGL173C	XRN1	73	54.496	ENSHGLG00000014476	XRN1	84	54.496	Heterocephalus_glaber_female
YGL173C	XRN1	73	54.496	ENSHGLG00100015130	XRN1	84	54.496	Heterocephalus_glaber_male
YGL173C	XRN1	72	53.261	ENSHCOG00000014062	xrn1	74	33.178	Hippocampus_comes
YGL173C	XRN1	73	53.261	ENSIPUG00000015229	xrn1	71	33.616	Ictalurus_punctatus
YGL173C	XRN1	73	54.496	ENSSTOG00000013552	XRN1	93	41.313	Ictidomys_tridecemlineatus
YGL173C	XRN1	71	54.678	ENSJJAG00000010863	Xrn1	88	55.263	Jaculus_jaculus
YGL173C	XRN1	77	52.717	ENSKMAG00000021356	xrn1	86	48.872	Kryptolebias_marmoratus
YGL173C	XRN1	72	52.446	ENSLBEG00000018656	xrn1	97	63.107	Labrus_bergylta
YGL173C	XRN1	83	34.193	ENSLACG00000009020	XRN1	70	34.015	Latimeria_chalumnae
YGL173C	XRN1	74	55.435	ENSLOCG00000007944	xrn1	67	55.435	Lepisosteus_oculatus
YGL173C	XRN1	64	54.768	ENSLAFG00000015426	XRN1	93	54.768	Loxodonta_africana
YGL173C	XRN1	81	34.434	ENSMFAG00000032599	XRN1	67	54.496	Macaca_fascicularis
YGL173C	XRN1	81	34.434	ENSMMUG00000014038	XRN1	67	54.496	Macaca_mulatta
YGL173C	XRN1	81	34.513	ENSMNEG00000034217	XRN1	67	54.496	Macaca_nemestrina
YGL173C	XRN1	73	52.989	ENSMAMG00000013219	xrn1	85	49.814	Mastacembelus_armatus
YGL173C	XRN1	74	52.989	ENSMZEG00005015099	xrn1	70	33.231	Maylandia_zebra
YGL173C	XRN1	79	32.985	ENSMGAG00000006333	XRN1	66	52.187	Meleagris_gallopavo
YGL173C	XRN1	73	54.496	ENSMICG00000048948	XRN1	100	59.813	Microcebus_murinus
YGL173C	XRN1	57	54.496	ENSMOCG00000008665	Xrn1	91	54.496	Microtus_ochrogaster
YGL173C	XRN1	81	33.987	ENSMODG00000021236	XRN1	68	53.951	Monodelphis_domestica
YGL173C	XRN1	78	52.989	ENSMALG00000004098	xrn1	78	52.989	Monopterus_albus
YGL173C	XRN1	73	54.223	MGP_CAROLIEiJ_G0032535	Xrn1	100	70.000	Mus_caroli
YGL173C	XRN1	81	34.041	ENSMUSG00000032410	Xrn1	100	70.000	Mus_musculus
YGL173C	XRN1	75	54.223	MGP_PahariEiJ_G0015404	Xrn1	100	70.000	Mus_pahari
YGL173C	XRN1	81	34.014	MGP_SPRETEiJ_G0033678	Xrn1	100	70.000	Mus_spretus
YGL173C	XRN1	73	54.496	ENSMPUG00000012040	XRN1	69	33.987	Mustela_putorius_furo
YGL173C	XRN1	81	34.694	ENSMLUG00000016885	XRN1	66	54.496	Myotis_lucifugus
YGL173C	XRN1	56	51.366	ENSNGAG00000023964	Xrn1	90	51.366	Nannospalax_galili
YGL173C	XRN1	81	34.540	ENSNLEG00000004726	XRN1	67	54.496	Nomascus_leucogenys
YGL173C	XRN1	73	52.989	ENSONIG00000016673	xrn1	79	33.127	Oreochromis_niloticus
YGL173C	XRN1	65	51.724	ENSOANG00000006735	XRN1	65	51.724	Ornithorhynchus_anatinus
YGL173C	XRN1	73	54.496	ENSOCUG00000001861	XRN1	65	54.496	Oryctolagus_cuniculus
YGL173C	XRN1	85	33.749	ENSORLG00000013005	xrn1	70	53.261	Oryzias_latipes
YGL173C	XRN1	72	53.261	ENSORLG00020005559	xrn1	72	53.261	Oryzias_latipes_hni
YGL173C	XRN1	72	53.533	ENSORLG00015022523	xrn1	72	53.533	Oryzias_latipes_hsok
YGL173C	XRN1	77	52.989	ENSOMEG00000015397	xrn1	72	52.989	Oryzias_melastigma
YGL173C	XRN1	74	54.496	ENSOGAG00000000170	XRN1	69	32.968	Otolemur_garnettii
YGL173C	XRN1	73	54.768	ENSOARG00000006343	XRN1	67	54.768	Ovis_aries
YGL173C	XRN1	81	34.513	ENSPPAG00000010180	XRN1	67	54.223	Pan_paniscus
YGL173C	XRN1	73	54.496	ENSPPRG00000007125	XRN1	67	54.496	Panthera_pardus
YGL173C	XRN1	73	54.496	ENSPTIG00000021081	XRN1	67	54.496	Panthera_tigris_altaica
YGL173C	XRN1	81	34.513	ENSPTRG00000015482	XRN1	67	54.223	Pan_troglodytes
YGL173C	XRN1	81	34.434	ENSPANG00000010638	XRN1	67	54.496	Papio_anubis
YGL173C	XRN1	72	53.804	ENSPSIG00000018050	XRN1	65	53.804	Pelodiscus_sinensis
YGL173C	XRN1	57	54.223	ENSPEMG00000020610	Xrn1	91	54.223	Peromyscus_maniculatus_bairdii
YGL173C	XRN1	68	53.143	ENSPMAG00000002975	xrn1	91	53.143	Petromyzon_marinus
YGL173C	XRN1	81	33.884	ENSPCIG00000028735	XRN1	94	54.223	Phascolarctos_cinereus
YGL173C	XRN1	73	52.446	ENSPFOG00000013932	xrn1	78	33.283	Poecilia_formosa
YGL173C	XRN1	73	52.446	ENSPLAG00000021653	xrn1	77	33.055	Poecilia_latipinna
YGL173C	XRN1	73	52.446	ENSPMEG00000003076	xrn1	76	33.283	Poecilia_mexicana
YGL173C	XRN1	76	50.758	ENSPREG00000021147	xrn1	71	51.902	Poecilia_reticulata
YGL173C	XRN1	81	34.906	ENSPPYG00000014172	XRN1	66	54.496	Pongo_abelii
YGL173C	XRN1	71	42.357	ENSPCAG00000005638	XRN1	66	42.357	Procavia_capensis
YGL173C	XRN1	73	54.768	ENSPCOG00000013089	XRN1	95	54.768	Propithecus_coquereli
YGL173C	XRN1	70	55.814	ENSPVAG00000016265	XRN1	64	55.814	Pteropus_vampyrus
YGL173C	XRN1	74	53.261	ENSPNYG00000010570	xrn1	72	33.102	Pundamilia_nyererei
YGL173C	XRN1	73	51.351	ENSPNAG00000023531	xrn1	70	33.829	Pygocentrus_nattereri
YGL173C	XRN1	73	54.223	ENSRNOG00000042951	Xrn1	66	54.223	Rattus_norvegicus
YGL173C	XRN1	81	34.513	ENSRBIG00000041227	XRN1	67	54.496	Rhinopithecus_bieti
YGL173C	XRN1	81	34.591	ENSSBOG00000029561	XRN1	67	54.496	Saimiri_boliviensis_boliviensis
YGL173C	XRN1	79	33.707	ENSSHAG00000016207	XRN1	66	54.678	Sarcophilus_harrisii
YGL173C	XRN1	75	52.185	ENSSFOG00015024211	xrn1	71	52.196	Scleropages_formosus
YGL173C	XRN1	74	52.717	ENSSMAG00000016534	xrn1	73	52.717	Scophthalmus_maximus
YGL173C	XRN1	75	53.261	ENSSDUG00000010306	xrn1	75	53.261	Seriola_dumerili
YGL173C	XRN1	75	53.261	ENSSLDG00000021543	xrn1	75	53.261	Seriola_lalandi_dorsalis
YGL173C	XRN1	60	54.678	ENSSARG00000007741	-	71	34.000	Sorex_araneus
YGL173C	XRN1	73	54.768	ENSTGUG00000008498	XRN1	66	54.768	Taeniopygia_guttata
YGL173C	XRN1	73	52.989	ENSTRUG00000004895	xrn1	87	49.342	Takifugu_rubripes
YGL173C	XRN1	74	52.846	ENSTNIG00000017615	xrn1	74	31.504	Tetraodon_nigroviridis
YGL173C	XRN1	56	53.406	ENSTBEG00000003256	XRN1	53	53.406	Tupaia_belangeri
YGL173C	XRN1	73	53.406	ENSTTRG00000012914	XRN1	67	53.406	Tursiops_truncatus
YGL173C	XRN1	73	49.319	ENSUAMG00000001608	XRN1	88	49.319	Ursus_americanus
YGL173C	XRN1	73	54.496	ENSUMAG00000013625	XRN1	66	54.496	Ursus_maritimus
YGL173C	XRN1	64	54.768	ENSVPAG00000004690	XRN1	59	54.768	Vicugna_pacos
YGL173C	XRN1	73	54.496	ENSVVUG00000024461	XRN1	93	51.880	Vulpes_vulpes
YGL173C	XRN1	72	54.472	ENSXETG00000000619	xrn1	96	52.989	Xenopus_tropicalis
YGL173C	XRN1	73	52.717	ENSXCOG00000007917	xrn1	71	52.717	Xiphophorus_couchianus
YGL173C	XRN1	73	52.717	ENSXMAG00000018320	xrn1	74	52.717	Xiphophorus_maculatus