EuRBPDB

Description

Ensembl ID: YGL178W (Gene tree)
Gene ID: -
Gene Symbol: MPT5
Alias: HTR1|PUF5|UTH4
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 3220
Position: chrVII:167352-170571
Accession: S000003146
RBP type: canonical RBP
Summary: mRNA-binding protein of the PUF family%3B binds to specific mRNAs%2C often in the 3' UTR%3B has broad specificity and binds to more than 1000 mRNAs (16%25 of the transcriptome)%3B recruits the CCR4-NOT deadenylase complex to mRNAs along with Dhh1p and Dcp1p to promote deadenylation%2C decapping%2C and decay%3B also interacts with the Caf20p translational initiation repressor%2C affecting its mRNA target specificity

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YGL178W_mRNA	PUF	PF00806.19	1.3e-58	1	7
YGL178W_mRNA	PUF	PF00806.19	1.3e-58	2	7
YGL178W_mRNA	PUF	PF00806.19	1.3e-58	3	7
YGL178W_mRNA	PUF	PF00806.19	1.3e-58	4	7
YGL178W_mRNA	PUF	PF00806.19	1.3e-58	5	7
YGL178W_mRNA	PUF	PF00806.19	1.3e-58	6	7
YGL178W_mRNA	PUF	PF00806.19	1.3e-58	7	7

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YGL178W_mRNA	-	2580	-	YGL178W_mRNA	859 (aa)	-	P39016

Gene Model

Protein-Protein Interaction (PPI)