EuRBPDB

Description

Ensembl ID: YGL210W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 669
Position: chrVII:93792-94460
Accession: S000003178
RBP type: canonical RBP
Summary: Rab family GTPase involved in the exocytic pathway%3B mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi%3B protein abundance increases in response to DNA replication stress%3B YPT32 has a paralog%2C YPT31%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YGL210W_mRNA	MMR_HSR1	PF01926.23	1.8e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YGL210W_mRNA	-	669	-	YGL210W_mRNA	222 (aa)	-	P51996

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YGL210W	-	71	36.810	YNL093W	-	74	36.810
YGL210W	-	94	33.810	YLR262C	-	95	33.810
YGL210W	-	53	30.508	YDL192W	-	62	30.508
YGL210W	-	82	44.262	YFL005W	SEC4	94	41.667
YGL210W	-	69	39.490	YOR089C	VPS21	75	39.490
YGL210W	-	73	30.286	YCR027C	RHB1	83	30.286
YGL210W	-	100	81.166	YER031C	YPT31	100	81.166
YGL210W	-	74	36.628	YML001W	YPT7	82	36.628
YGL210W	-	53	40.323	YBR264C	-	62	40.323
YGL210W	-	83	35.321	YKR014C	-	91	35.321

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YGL210W	-	87	57.216	WBGene00004275	rab-11.2	96	57.216	Caenorhabditis_elegans
YGL210W	-	76	53.571	ENSCING00000005409	-	75	53.571	Ciona_intestinalis
YGL210W	-	96	45.833	ENSCSAVG00000005120	-	89	45.833	Ciona_savignyi