EuRBPDB

Description

Ensembl ID: YGR094W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Mitochondrial and cytoplasmic valyl-tRNA synthetase%3B human homolog VARS2 implicated in mitochondrial diseases%2C can partially complement yeast null mutant
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 3315 bases
Position: chrVII:672186-675500
Accession: S000003326
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YGR094W_mRNA	tRNA-synt_1g	PF09334.11	7.9e-16	1	1
YGR094W_mRNA	Anticodon_1	PF08264.13	3.9e-32	1	1
YGR094W_mRNA	tRNA-synt_1	PF00133.22	2.9e-243	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YGR094W_mRNA	-	3315	-	YGR094W_mRNA	1104 (aa)	-	P07806

Gene Model

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YGR094W	-	90	47.925	WBGene00006936	glp-4	94	48.096	Caenorhabditis_elegans
YGR094W	-	67	50.461	ENSCING00000009087	-	99	50.461	Ciona_intestinalis
YGR094W	-	72	40.926	ENSCING00000008182	-	97	40.537	Ciona_intestinalis
YGR094W	-	83	35.936	ENSCSAVG00000000521	-	99	41.074	Ciona_savignyi
YGR094W	-	93	50.958	FBgn0027079	ValRS	94	51.503	Drosophila_melanogaster