EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YGR171C (Gene tree)
Gene ID: -
Gene Symbol: MSM1
Alias: -
Full Name: Mitochondrial methionyl-tRNA synthetase (MetRS)%3B functions as a monomer in mitochondrial protein synthesis%3B functions similarly to cytoplasmic MetRS although the cytoplasmic form contains a zinc-binding domain not found in Msm1p
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Minus strand
Length: 1728 bases
Position: chrVII:840824-842551
Accession: S000003403
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YGR171C_mRNA	tRNA-synt_1g	PF09334.11	1.9e-84	1	1
YGR171C_mRNA	tRNA-synt_1	PF00133.22	5.7e-20	1	2
YGR171C_mRNA	tRNA-synt_1	PF00133.22	5.7e-20	2	2
YGR171C_mRNA	tRNA-synt_1e	PF01406.19	1.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YGR171C_mRNA	-	1728	-	YGR171C_mRNA	575 (aa)	-	P22438

Gene Model

Click here to download YGR171C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YGR171C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YGR171C	MSM1	91	36.881	ENSG00000247626	MARS2	85	36.881	Homo_sapiens
YGR171C	MSM1	93	36.716	ENSAPOG00000013656	mars2	84	36.716	Acanthochromis_polyacanthus
YGR171C	MSM1	90	37.085	ENSAMEG00000019748	MARS2	85	37.085	Ailuropoda_melanoleuca
YGR171C	MSM1	90	38.491	ENSACIG00000014134	mars2	85	38.491	Amphilophus_citrinellus
YGR171C	MSM1	93	37.085	ENSAOCG00000018305	mars2	86	37.085	Amphiprion_ocellaris
YGR171C	MSM1	93	37.085	ENSAPEG00000004704	mars2	86	37.085	Amphiprion_percula
YGR171C	MSM1	90	37.051	ENSATEG00000000690	mars2	84	37.051	Anabas_testudineus
YGR171C	MSM1	92	34.871	ENSACAG00000008856	MARS2	96	34.871	Anolis_carolinensis
YGR171C	MSM1	91	36.514	ENSANAG00000001001	MARS2	85	36.514	Aotus_nancymaae
YGR171C	MSM1	90	37.879	ENSACLG00000002370	mars2	83	37.879	Astatotilapia_calliptera
YGR171C	MSM1	91	36.822	ENSAMXG00000011610	mars2	82	36.822	Astyanax_mexicanus
YGR171C	MSM1	94	36.655	ENSBTAG00000002056	MARS2	89	36.655	Bos_taurus
YGR171C	MSM1	91	36.784	ENSCJAG00000022885	MARS2	85	36.784	Callithrix_jacchus
YGR171C	MSM1	90	36.313	ENSCAFG00000024359	MARS2	85	36.599	Canis_familiaris
YGR171C	MSM1	90	36.229	ENSCAFG00020004676	MARS2	60	36.599	Canis_lupus_dingo
YGR171C	MSM1	94	36.572	ENSCHIG00000016548	MARS2	91	36.572	Capra_hircus
YGR171C	MSM1	97	36.915	ENSCPOG00000025973	MARS2	91	36.915	Cavia_porcellus
YGR171C	MSM1	91	36.697	ENSCCAG00000019937	MARS2	85	36.697	Cebus_capucinus
YGR171C	MSM1	91	37.132	ENSCATG00000001827	MARS2	82	37.064	Cercocebus_atys
YGR171C	MSM1	97	33.045	ENSCLAG00000010386	MARS2	91	33.045	Chinchilla_lanigera
YGR171C	MSM1	91	37.132	ENSCSAG00000018765	MARS2	85	37.064	Chlorocebus_sabaeus
YGR171C	MSM1	68	40.299	ENSCHOG00000012068	MARS2	62	40.796	Choloepus_hoffmanni
YGR171C	MSM1	97	33.161	ENSCPBG00000012041	MARS2	94	33.161	Chrysemys_picta_bellii
YGR171C	MSM1	92	36.581	ENSCING00000005183	-	92	36.581	Ciona_intestinalis
YGR171C	MSM1	91	35.662	ENSCSAVG00000011619	-	98	34.918	Ciona_savignyi
YGR171C	MSM1	91	36.765	ENSCANG00000038503	MARS2	85	36.697	Colobus_angolensis_palliatus
YGR171C	MSM1	94	36.833	ENSCGRG00001010364	Mars2	90	36.833	Cricetulus_griseus_chok1gshd
YGR171C	MSM1	94	36.833	ENSCGRG00000019118	Mars2	90	36.833	Cricetulus_griseus_crigri
YGR171C	MSM1	94	37.411	ENSCSEG00000002875	mars2	90	37.411	Cynoglossus_semilaevis
YGR171C	MSM1	93	36.396	ENSCVAG00000004559	mars2	91	36.396	Cyprinodon_variegatus
YGR171C	MSM1	97	36.192	ENSDARG00000009218	mars2	92	36.192	Danio_rerio
YGR171C	MSM1	90	35.370	ENSDNOG00000041522	MARS2	85	35.370	Dasypus_novemcinctus
YGR171C	MSM1	79	35.181	ENSDORG00000010789	Mars2	88	34.801	Dipodomys_ordii
YGR171C	MSM1	93	33.821	FBgn0027083	MetRS-m	87	33.821	Drosophila_melanogaster
YGR171C	MSM1	91	36.015	ENSEASG00005020133	MARS2	85	36.380	Equus_asinus_asinus
YGR171C	MSM1	91	36.015	ENSECAG00000004931	MARS2	70	36.380	Equus_caballus
YGR171C	MSM1	97	34.392	ENSELUG00000016227	mars2	88	34.392	Esox_lucius
YGR171C	MSM1	90	36.900	ENSFCAG00000009491	MARS2	85	36.900	Felis_catus
YGR171C	MSM1	83	34.677	ENSFALG00000011592	MARS2	91	34.677	Ficedula_albicollis
YGR171C	MSM1	77	35.141	ENSFDAG00000012635	MARS2	94	35.141	Fukomys_damarensis
YGR171C	MSM1	90	37.665	ENSFHEG00000014055	mars2	83	37.665	Fundulus_heteroclitus
YGR171C	MSM1	90	36.812	ENSGMOG00000011494	mars2	90	36.812	Gadus_morhua
YGR171C	MSM1	90	35.120	ENSGALG00000004019	MARS2	88	35.120	Gallus_gallus
YGR171C	MSM1	93	36.577	ENSGAFG00000001691	mars2	87	36.577	Gambusia_affinis
YGR171C	MSM1	91	36.842	ENSGACG00000017489	mars2	83	36.842	Gasterosteus_aculeatus
YGR171C	MSM1	97	33.161	ENSGAGG00000009486	MARS2	94	33.161	Gopherus_agassizii
YGR171C	MSM1	97	36.348	ENSGGOG00000034895	MARS2	91	36.348	Gorilla_gorilla
YGR171C	MSM1	90	38.068	ENSHBUG00000018278	mars2	83	38.068	Haplochromis_burtoni
YGR171C	MSM1	97	34.536	ENSHGLG00000017624	MARS2	86	35.727	Heterocephalus_glaber_female
YGR171C	MSM1	97	33.505	ENSHGLG00100009649	MARS2	86	34.622	Heterocephalus_glaber_male
YGR171C	MSM1	94	36.823	ENSHCOG00000007757	mars2	86	36.823	Hippocampus_comes
YGR171C	MSM1	94	36.528	ENSIPUG00000009852	mars2	87	36.528	Ictalurus_punctatus
YGR171C	MSM1	91	36.280	ENSSTOG00000015451	MARS2	86	36.280	Ictidomys_tridecemlineatus
YGR171C	MSM1	90	37.058	ENSJJAG00000023940	Mars2	86	37.058	Jaculus_jaculus
YGR171C	MSM1	91	38.041	ENSKMAG00000019760	mars2	83	38.041	Kryptolebias_marmoratus
YGR171C	MSM1	90	38.826	ENSLBEG00000003607	mars2	82	38.826	Labrus_bergylta
YGR171C	MSM1	97	37.108	ENSLACG00000007705	MARS2	91	37.108	Latimeria_chalumnae
YGR171C	MSM1	71	41.119	ENSLOCG00000015357	mars2	88	41.119	Lepisosteus_oculatus
YGR171C	MSM1	94	35.714	ENSLAFG00000030667	MARS2	89	36.071	Loxodonta_africana
YGR171C	MSM1	91	37.132	ENSMFAG00000012275	MARS2	85	37.064	Macaca_fascicularis
YGR171C	MSM1	91	37.132	ENSMMUG00000023810	MARS2	85	37.064	Macaca_mulatta
YGR171C	MSM1	91	37.132	ENSMNEG00000019593	MARS2	82	37.064	Macaca_nemestrina
YGR171C	MSM1	91	37.132	ENSMLEG00000023045	MARS2	85	37.064	Mandrillus_leucophaeus
YGR171C	MSM1	90	37.996	ENSMAMG00000019576	mars2	84	37.996	Mastacembelus_armatus
YGR171C	MSM1	90	37.879	ENSMZEG00005008469	mars2	83	37.879	Maylandia_zebra
YGR171C	MSM1	90	34.935	ENSMGAG00000001828	MARS2	92	34.935	Meleagris_gallopavo
YGR171C	MSM1	94	36.477	ENSMAUG00000017224	Mars2	90	36.477	Mesocricetus_auratus
YGR171C	MSM1	94	35.943	ENSMOCG00000006676	Mars2	90	36.299	Microtus_ochrogaster
YGR171C	MSM1	91	36.723	ENSMMOG00000004128	mars2	86	36.723	Mola_mola
YGR171C	MSM1	94	34.458	ENSMODG00000024604	MARS2	94	34.458	Monodelphis_domestica
YGR171C	MSM1	91	37.009	ENSMALG00000007538	mars2	83	37.009	Monopterus_albus
YGR171C	MSM1	97	35.345	MGP_CAROLIEiJ_G0014147	Mars2	93	35.345	Mus_caroli
YGR171C	MSM1	97	35.517	ENSMUSG00000046994	Mars2	93	35.517	Mus_musculus
YGR171C	MSM1	97	35.862	MGP_PahariEiJ_G0027386	Mars2	93	35.862	Mus_pahari
YGR171C	MSM1	97	35.517	MGP_SPRETEiJ_G0014953	Mars2	93	35.517	Mus_spretus
YGR171C	MSM1	90	37.546	ENSMPUG00000019823	MARS2	85	37.546	Mustela_putorius_furo
YGR171C	MSM1	94	36.572	ENSNGAG00000018031	Mars2	91	36.572	Nannospalax_galili
YGR171C	MSM1	90	38.447	ENSNBRG00000012114	mars2	85	38.447	Neolamprologus_brichardi
YGR171C	MSM1	91	36.697	ENSNLEG00000018752	MARS2	85	36.697	Nomascus_leucogenys
YGR171C	MSM1	90	33.456	ENSMEUG00000000590	MARS2	86	33.456	Notamacropus_eugenii
YGR171C	MSM1	90	37.925	ENSONIG00000002473	mars2	83	37.925	Oreochromis_niloticus
YGR171C	MSM1	94	35.879	ENSOCUG00000017798	MARS2	89	35.879	Oryctolagus_cuniculus
YGR171C	MSM1	91	35.912	ENSORLG00000000799	mars2	85	35.912	Oryzias_latipes
YGR171C	MSM1	90	36.911	ENSORLG00020004562	mars2	85	36.911	Oryzias_latipes_hni
YGR171C	MSM1	90	37.100	ENSORLG00015013596	mars2	85	37.100	Oryzias_latipes_hsok
YGR171C	MSM1	90	36.891	ENSOMEG00000013859	mars2	84	36.891	Oryzias_melastigma
YGR171C	MSM1	91	37.064	ENSOGAG00000007205	MARS2	85	37.064	Otolemur_garnettii
YGR171C	MSM1	94	36.155	ENSOARG00000015634	MARS2	89	36.155	Ovis_aries
YGR171C	MSM1	91	37.064	ENSPPAG00000007220	MARS2	85	37.064	Pan_paniscus
YGR171C	MSM1	90	36.900	ENSPPRG00000018464	MARS2	85	36.900	Panthera_pardus
YGR171C	MSM1	91	37.064	ENSPTRG00000047853	MARS2	85	37.064	Pan_troglodytes
YGR171C	MSM1	91	37.132	ENSPANG00000016544	MARS2	85	37.064	Papio_anubis
YGR171C	MSM1	93	37.138	ENSPKIG00000021425	mars2	85	37.138	Paramormyrops_kingsleyae
YGR171C	MSM1	89	32.645	ENSPSIG00000009657	MARS2	98	32.645	Pelodiscus_sinensis
YGR171C	MSM1	90	38.374	ENSPMGG00000020811	mars2	90	38.374	Periophthalmus_magnuspinnatus
YGR171C	MSM1	91	36.499	ENSPEMG00000008377	Mars2	86	36.499	Peromyscus_maniculatus_bairdii
YGR171C	MSM1	89	37.262	ENSPMAG00000004222	mars2	89	37.009	Petromyzon_marinus
YGR171C	MSM1	94	33.748	ENSPCIG00000010610	MARS2	84	33.748	Phascolarctos_cinereus
YGR171C	MSM1	93	36.396	ENSPFOG00000000782	mars2	86	36.396	Poecilia_formosa
YGR171C	MSM1	93	36.396	ENSPLAG00000003992	mars2	86	36.396	Poecilia_latipinna
YGR171C	MSM1	93	36.577	ENSPMEG00000016916	mars2	86	36.577	Poecilia_mexicana
YGR171C	MSM1	93	36.479	ENSPREG00000012744	mars2	86	36.479	Poecilia_reticulata
YGR171C	MSM1	91	36.881	ENSPPYG00000013049	MARS2	85	36.881	Pongo_abelii
YGR171C	MSM1	76	33.407	ENSPVAG00000015267	MARS2	71	33.407	Pteropus_vampyrus
YGR171C	MSM1	90	38.068	ENSPNYG00000009085	mars2	83	38.068	Pundamilia_nyererei
YGR171C	MSM1	94	34.846	ENSPNAG00000017691	mars2	90	34.846	Pygocentrus_nattereri
YGR171C	MSM1	97	35.345	ENSRNOG00000050002	Mars2	93	35.345	Rattus_norvegicus
YGR171C	MSM1	97	35.345	ENSRNOG00000048668	LOC100911305	93	35.345	Rattus_norvegicus
YGR171C	MSM1	91	37.132	ENSRBIG00000018803	MARS2	85	37.064	Rhinopithecus_bieti
YGR171C	MSM1	91	37.132	ENSRROG00000012594	MARS2	85	37.064	Rhinopithecus_roxellana
YGR171C	MSM1	91	36.697	ENSSBOG00000016226	MARS2	85	36.697	Saimiri_boliviensis_boliviensis
YGR171C	MSM1	94	32.014	ENSSHAG00000017980	MARS2	95	32.014	Sarcophilus_harrisii
YGR171C	MSM1	90	36.685	ENSSFOG00015004532	mars2	84	36.685	Scleropages_formosus
YGR171C	MSM1	95	36.871	ENSSMAG00000012289	mars2	86	36.871	Scophthalmus_maximus
YGR171C	MSM1	94	37.004	ENSSDUG00000004847	mars2	87	37.004	Seriola_dumerili
YGR171C	MSM1	94	36.643	ENSSLDG00000004117	mars2	87	36.643	Seriola_lalandi_dorsalis
YGR171C	MSM1	91	36.431	ENSSARG00000004616	MARS2	85	36.431	Sorex_araneus
YGR171C	MSM1	90	34.522	ENSSPUG00000005569	MARS2	86	34.522	Sphenodon_punctatus
YGR171C	MSM1	90	37.051	ENSSPAG00000001547	mars2	82	37.051	Stegastes_partitus
YGR171C	MSM1	91	36.296	ENSSSCG00000034494	MARS2	87	36.296	Sus_scrofa
YGR171C	MSM1	84	34.350	ENSTGUG00000005225	MARS2	92	34.350	Taeniopygia_guttata
YGR171C	MSM1	90	36.585	ENSTRUG00000012627	mars2	82	36.585	Takifugu_rubripes
YGR171C	MSM1	90	38.104	ENSTNIG00000015747	mars2	85	38.104	Tetraodon_nigroviridis
YGR171C	MSM1	94	35.866	ENSTTRG00000003421	MARS2	89	35.866	Tursiops_truncatus
YGR171C	MSM1	90	36.716	ENSUAMG00000009131	MARS2	86	36.716	Ursus_americanus
YGR171C	MSM1	90	32.653	ENSUMAG00000020961	MARS2	85	32.653	Ursus_maritimus
YGR171C	MSM1	90	35.714	ENSVVUG00000025921	MARS2	85	36.081	Vulpes_vulpes
YGR171C	MSM1	90	36.773	ENSXETG00000018187	mars2	85	36.773	Xenopus_tropicalis
YGR171C	MSM1	93	35.986	ENSXCOG00000016798	mars2	88	35.986	Xiphophorus_couchianus
YGR171C	MSM1	93	35.805	ENSXMAG00000000296	mars2	86	35.805	Xiphophorus_maculatus