EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YGR271W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Putative RNA helicase related to Ski2p%3B involved in translation inhibition of non-poly(A) mRNAs%3B required for repressing propagation of dsRNA viruses
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 5904 bases
Position: chrVII:1031791-1037694
Accession: S000003503
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YGR271W_mRNA	ResIII	PF04851.15	2.6e-30	1	2
YGR271W_mRNA	ResIII	PF04851.15	2.6e-30	2	2
YGR271W_mRNA	DEAD	PF00270.29	6.5e-50	1	2
YGR271W_mRNA	DEAD	PF00270.29	6.5e-50	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YGR271W_mRNA	-	5904	-	YGR271W_mRNA	1967 (aa)	-	P53327

Gene Model

Click here to download YGR271W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YGR271W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YGR271W	-	87	34.146	YER172C	BRR2	77	34.105
YGR271W	-	64	30.318	YGL251C	HFM1	57	30.318

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YGR271W	-	81	48.327	ENSG00000112249	ASCC3	72	48.327	Homo_sapiens
YGR271W	-	81	48.077	ENSAMEG00000014749	ASCC3	72	48.077	Ailuropoda_melanoleuca
YGR271W	-	89	44.211	ENSACIG00000004551	ascc3	89	42.469	Amphilophus_citrinellus
YGR271W	-	93	43.747	ENSAOCG00000005106	ascc3	89	43.643	Amphiprion_ocellaris
YGR271W	-	93	43.851	ENSAPEG00000006181	ascc3	92	43.695	Amphiprion_percula
YGR271W	-	80	48.929	ENSATEG00000024950	ascc3	71	48.929	Anabas_testudineus
YGR271W	-	81	47.872	ENSAPLG00000012589	-	83	47.276	Anas_platyrhynchos
YGR271W	-	82	47.439	ENSACAG00000010080	ASCC3	73	47.439	Anolis_carolinensis
YGR271W	-	81	48.265	ENSANAG00000021476	ASCC3	72	48.265	Aotus_nancymaae
YGR271W	-	88	45.582	ENSACLG00000006736	ascc3	90	45.582	Astatotilapia_calliptera
YGR271W	-	84	44.438	ENSAMXG00000001395	ascc3	77	44.496	Astyanax_mexicanus
YGR271W	-	81	48.263	ENSBTAG00000020482	ASCC3	72	48.263	Bos_taurus
YGR271W	-	80	44.975	WBGene00013189	Y54E2A.4	87	42.538	Caenorhabditis_elegans
YGR271W	-	82	48.892	ENSCJAG00000001507	ASCC3	80	48.892	Callithrix_jacchus
YGR271W	-	82	47.747	ENSCAFG00000003554	ASCC3	74	47.747	Canis_familiaris
YGR271W	-	82	48.695	ENSCAFG00020016899	ASCC3	74	47.747	Canis_lupus_dingo
YGR271W	-	81	48.325	ENSCHIG00000023605	ASCC3	72	48.325	Capra_hircus
YGR271W	-	82	48.756	ENSTSYG00000006324	ASCC3	80	48.756	Carlito_syrichta
YGR271W	-	82	49.279	ENSCAPG00000010888	ASCC3	81	49.279	Cavia_aperea
YGR271W	-	81	48.759	ENSCPOG00000013989	ASCC3	73	48.759	Cavia_porcellus
YGR271W	-	81	48.265	ENSCCAG00000024230	ASCC3	72	48.265	Cebus_capucinus
YGR271W	-	81	48.267	ENSCATG00000011281	ASCC3	72	48.267	Cercocebus_atys
YGR271W	-	81	48.387	ENSCLAG00000009794	ASCC3	72	48.387	Chinchilla_lanigera
YGR271W	-	81	48.203	ENSCSAG00000014674	ASCC3	72	48.203	Chlorocebus_sabaeus
YGR271W	-	74	49.088	ENSCHOG00000002063	ASCC3	60	49.088	Choloepus_hoffmanni
YGR271W	-	80	48.300	ENSCPBG00000003881	ASCC3	78	45.398	Chrysemys_picta_bellii
YGR271W	-	89	44.655	ENSCSAVG00000007670	-	99	53.162	Ciona_savignyi
YGR271W	-	81	48.389	ENSCANG00000004215	ASCC3	72	48.389	Colobus_angolensis_palliatus
YGR271W	-	81	48.297	ENSCGRG00001000918	Ascc3	72	48.297	Cricetulus_griseus_chok1gshd
YGR271W	-	81	48.297	ENSCGRG00000012933	Ascc3	72	48.297	Cricetulus_griseus_crigri
YGR271W	-	80	48.489	ENSCSEG00000012811	ascc3	71	48.489	Cynoglossus_semilaevis
YGR271W	-	92	43.615	ENSCVAG00000013014	ascc3	86	43.615	Cyprinodon_variegatus
YGR271W	-	82	47.734	ENSDARG00000086678	ascc3	99	55.629	Danio_rerio
YGR271W	-	82	48.642	ENSDNOG00000010279	ASCC3	96	48.642	Dasypus_novemcinctus
YGR271W	-	89	45.560	ENSDORG00000008572	Ascc3	81	45.560	Dipodomys_ordii
YGR271W	-	88	44.888	FBgn0038344	obe	80	44.944	Drosophila_melanogaster
YGR271W	-	55	51.111	ENSEBUG00000009772	-	99	49.915	Eptatretus_burgeri
YGR271W	-	59	49.237	ENSEBUG00000007355	-	99	49.237	Eptatretus_burgeri
YGR271W	-	82	47.929	ENSEASG00005006324	ASCC3	74	47.929	Equus_asinus_asinus
YGR271W	-	82	47.868	ENSECAG00000012013	ASCC3	79	46.984	Equus_caballus
YGR271W	-	82	45.058	ENSEEUG00000009748	ASCC3	79	45.058	Erinaceus_europaeus
YGR271W	-	81	50.554	ENSELUG00000023441	ascc3	79	46.924	Esox_lucius
YGR271W	-	82	47.625	ENSFCAG00000031266	ASCC3	74	47.625	Felis_catus
YGR271W	-	87	45.838	ENSFALG00000005260	ASCC3	79	45.838	Ficedula_albicollis
YGR271W	-	87	46.044	ENSFDAG00000011358	ASCC3	79	46.044	Fukomys_damarensis
YGR271W	-	80	49.057	ENSFHEG00000019247	ascc3	80	45.802	Fundulus_heteroclitus
YGR271W	-	80	48.929	ENSGMOG00000018158	ascc3	73	48.929	Gadus_morhua
YGR271W	-	87	45.249	ENSGALG00000015465	ASCC3	78	45.249	Gallus_gallus
YGR271W	-	80	48.837	ENSGACG00000014141	ascc3	79	45.866	Gasterosteus_aculeatus
YGR271W	-	81	48.942	ENSGAGG00000020794	ASCC3	85	48.837	Gopherus_agassizii
YGR271W	-	81	48.389	ENSGGOG00000002790	ASCC3	72	48.389	Gorilla_gorilla
YGR271W	-	82	48.264	ENSHBUG00000015110	ascc3	83	45.627	Haplochromis_burtoni
YGR271W	-	81	48.387	ENSHGLG00000002093	ASCC3	72	48.387	Heterocephalus_glaber_female
YGR271W	-	81	46.724	ENSHGLG00100005896	ASCC3	72	46.724	Heterocephalus_glaber_male
YGR271W	-	80	49.244	ENSHCOG00000021142	ascc3	80	45.394	Hippocampus_comes
YGR271W	-	84	46.740	ENSIPUG00000013863	ascc3	77	46.857	Ictalurus_punctatus
YGR271W	-	81	47.519	ENSSTOG00000006645	ASCC3	72	47.519	Ictidomys_tridecemlineatus
YGR271W	-	81	47.519	ENSJJAG00000022570	Ascc3	72	47.829	Jaculus_jaculus
YGR271W	-	80	49.150	ENSKMAG00000003953	ascc3	71	49.150	Kryptolebias_marmoratus
YGR271W	-	89	45.450	ENSLBEG00000009623	ascc3	95	45.450	Labrus_bergylta
YGR271W	-	78	46.425	ENSLACG00000015253	ascc3	90	46.425	Latimeria_chalumnae
YGR271W	-	88	45.946	ENSLOCG00000016550	ascc3	80	45.946	Lepisosteus_oculatus
YGR271W	-	77	48.193	ENSLAFG00000011363	ASCC3	71	48.193	Loxodonta_africana
YGR271W	-	81	48.267	ENSMFAG00000002081	ASCC3	72	48.267	Macaca_fascicularis
YGR271W	-	81	48.267	ENSMMUG00000022287	ASCC3	72	48.267	Macaca_mulatta
YGR271W	-	81	48.267	ENSMNEG00000032760	ASCC3	72	48.267	Macaca_nemestrina
YGR271W	-	81	46.900	ENSMLEG00000035241	ASCC3	72	46.900	Mandrillus_leucophaeus
YGR271W	-	90	44.970	ENSMAMG00000005917	ascc3	89	42.814	Mastacembelus_armatus
YGR271W	-	76	48.539	ENSMZEG00005002710	ascc3	71	48.539	Maylandia_zebra
YGR271W	-	81	47.785	ENSMGAG00000013551	ASCC3	72	47.785	Meleagris_gallopavo
YGR271W	-	81	48.141	ENSMAUG00000018304	Ascc3	72	48.141	Mesocricetus_auratus
YGR271W	-	88	45.521	ENSMICG00000008861	ASCC3	80	45.521	Microcebus_murinus
YGR271W	-	88	45.552	ENSMOCG00000004549	Ascc3	80	45.552	Microtus_ochrogaster
YGR271W	-	91	42.744	ENSMMOG00000003198	ascc3	88	42.373	Mola_mola
YGR271W	-	88	45.562	ENSMODG00000018082	ASCC3	80	45.562	Monodelphis_domestica
YGR271W	-	87	44.533	ENSMALG00000015536	ascc3	89	42.402	Monopterus_albus
YGR271W	-	90	44.826	MGP_CAROLIEiJ_G0015302	Ascc3	82	44.826	Mus_caroli
YGR271W	-	90	44.704	ENSMUSG00000038774	Ascc3	82	44.704	Mus_musculus
YGR271W	-	90	44.704	MGP_SPRETEiJ_G0016111	Ascc3	82	44.704	Mus_spretus
YGR271W	-	81	48.077	ENSMPUG00000001675	ASCC3	72	48.077	Mustela_putorius_furo
YGR271W	-	82	47.442	ENSMLUG00000002886	ASCC3	74	47.442	Myotis_lucifugus
YGR271W	-	81	48.201	ENSNGAG00000000702	Ascc3	72	48.201	Nannospalax_galili
YGR271W	-	88	55.300	ENSNBRG00000022083	ascc3	83	55.300	Neolamprologus_brichardi
YGR271W	-	81	48.265	ENSNLEG00000013890	ASCC3	72	48.265	Nomascus_leucogenys
YGR271W	-	75	72.727	ENSMEUG00000003061	ASCC3	51	72.727	Notamacropus_eugenii
YGR271W	-	88	45.649	ENSODEG00000000069	ASCC3	80	45.649	Octodon_degus
YGR271W	-	89	45.404	ENSONIG00000016540	ascc3	81	45.404	Oreochromis_niloticus
YGR271W	-	81	47.316	ENSOANG00000008944	ASCC3	72	47.316	Ornithorhynchus_anatinus
YGR271W	-	81	48.573	ENSOCUG00000002766	ASCC3	73	48.573	Oryctolagus_cuniculus
YGR271W	-	87	46.184	ENSORLG00000004221	ascc3	84	46.184	Oryzias_latipes
YGR271W	-	88	46.003	ENSORLG00020022595	ascc3	89	46.350	Oryzias_latipes_hni
YGR271W	-	88	45.947	ENSORLG00015009231	ascc3	84	46.293	Oryzias_latipes_hsok
YGR271W	-	87	46.435	ENSOMEG00000019630	ascc3	85	44.610	Oryzias_melastigma
YGR271W	-	81	49.254	ENSOGAG00000009875	ASCC3	75	49.254	Otolemur_garnettii
YGR271W	-	81	48.263	ENSOARG00000011627	ASCC3	72	48.263	Ovis_aries
YGR271W	-	81	48.327	ENSPPAG00000030772	ASCC3	72	48.327	Pan_paniscus
YGR271W	-	82	47.625	ENSPPRG00000011358	ASCC3	74	47.625	Panthera_pardus
YGR271W	-	82	47.503	ENSPTIG00000006331	ASCC3	74	47.503	Panthera_tigris_altaica
YGR271W	-	81	48.265	ENSPTRG00000018448	ASCC3	72	48.265	Pan_troglodytes
YGR271W	-	81	48.205	ENSPANG00000006307	ASCC3	72	48.205	Papio_anubis
YGR271W	-	81	48.907	ENSPKIG00000013639	ascc3	72	48.907	Paramormyrops_kingsleyae
YGR271W	-	77	46.893	ENSPSIG00000002620	-	81	46.893	Pelodiscus_sinensis
YGR271W	-	81	48.017	ENSPEMG00000015319	Ascc3	72	48.017	Peromyscus_maniculatus_bairdii
YGR271W	-	78	49.256	ENSPMAG00000002163	-	100	49.256	Petromyzon_marinus
YGR271W	-	82	47.754	ENSPCIG00000017288	ASCC3	75	47.384	Phascolarctos_cinereus
YGR271W	-	78	49.580	ENSPFOG00000001462	ascc3	77	49.580	Poecilia_formosa
YGR271W	-	80	49.182	ENSPREG00000017616	ascc3	79	46.514	Poecilia_reticulata
YGR271W	-	82	47.767	ENSPPYG00000016869	ASCC3	72	47.767	Pongo_abelii
YGR271W	-	77	45.907	ENSPCAG00000008834	ASCC3	66	45.907	Procavia_capensis
YGR271W	-	86	44.091	ENSPVAG00000012827	ASCC3	78	44.091	Pteropus_vampyrus
YGR271W	-	88	45.582	ENSPNYG00000018913	ascc3	90	45.582	Pundamilia_nyererei
YGR271W	-	80	48.645	ENSPNAG00000016413	ascc3	92	45.172	Pygocentrus_nattereri
YGR271W	-	81	48.265	ENSRNOG00000037604	Ascc3	72	48.265	Rattus_norvegicus
YGR271W	-	81	48.265	ENSRROG00000045402	ASCC3	72	48.265	Rhinopithecus_roxellana
YGR271W	-	81	48.203	ENSSBOG00000025142	ASCC3	72	48.203	Saimiri_boliviensis_boliviensis
YGR271W	-	81	48.045	ENSSHAG00000016496	ASCC3	73	47.669	Sarcophilus_harrisii
YGR271W	-	86	45.526	ENSSFOG00015010273	ascc3	80	45.639	Scleropages_formosus
YGR271W	-	81	48.750	ENSSMAG00000012927	ascc3	78	46.057	Scophthalmus_maximus
YGR271W	-	90	45.275	ENSSDUG00000010897	ascc3	82	45.270	Seriola_dumerili
YGR271W	-	90	45.280	ENSSLDG00000021782	ascc3	82	45.275	Seriola_lalandi_dorsalis
YGR271W	-	81	44.805	ENSSARG00000001858	ASCC3	66	44.565	Sorex_araneus
YGR271W	-	81	48.212	ENSSPUG00000001842	ASCC3	72	48.212	Sphenodon_punctatus
YGR271W	-	80	48.804	ENSSPAG00000007677	ascc3	77	46.368	Stegastes_partitus
YGR271W	-	82	47.808	ENSSSCG00000004358	ASCC3	81	47.808	Sus_scrofa
YGR271W	-	81	48.287	ENSTGUG00000012262	ASCC3	80	48.287	Taeniopygia_guttata
YGR271W	-	82	48.802	ENSTNIG00000005079	ascc3	70	48.802	Tetraodon_nigroviridis
YGR271W	-	75	69.767	ENSTBEG00000015236	ASCC3	61	69.767	Tupaia_belangeri
YGR271W	-	81	48.443	ENSTTRG00000008255	ASCC3	68	48.443	Tursiops_truncatus
YGR271W	-	77	48.706	ENSUAMG00000023340	-	98	48.706	Ursus_americanus
YGR271W	-	81	47.270	ENSUMAG00000021200	ASCC3	72	47.270	Ursus_maritimus
YGR271W	-	82	45.920	ENSVPAG00000001408	ASCC3	74	45.920	Vicugna_pacos
YGR271W	-	88	46.237	ENSVVUG00000015397	ASCC3	79	46.237	Vulpes_vulpes
YGR271W	-	78	46.355	ENSXETG00000032212	-	80	46.355	Xenopus_tropicalis
YGR271W	-	80	49.182	ENSXMAG00000000071	ascc3	79	46.431	Xiphophorus_maculatus