EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YGR278W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Spliceosome-associated protein that is required for pre-mRNA splicing%3B necessary for Prp2p function at the first catalytic step of splicing%3B has similarity to S. pombe Cwf22p%3B CWC22 is an essential protein
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1734 bases
Position: chrVII:1046731-1048464
Accession: S000003510
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YGR278W_mRNA	MA3	PF02847.17	9.8e-27	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YGR278W_mRNA	-	1734	-	YGR278W_mRNA	577 (aa)	-	P53333

Gene Model

Click here to download YGR278W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YGR278W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YGR278W	-	83	30.078	ENSAMEG00000011004	CWC22	55	30.632	Ailuropoda_melanoleuca
YGR278W	-	83	30.078	ENSBTAG00000021726	CWC22	55	30.632	Bos_taurus
YGR278W	-	83	30.078	ENSCAFG00000014160	CWC22	55	30.632	Canis_familiaris
YGR278W	-	83	30.550	ENSCAFG00020007223	CWC22	56	30.632	Canis_lupus_dingo
YGR278W	-	83	30.078	ENSCHIG00000017150	CWC22	55	30.632	Capra_hircus
YGR278W	-	82	30.297	ENSCLAG00000011118	CWC22	55	30.891	Chinchilla_lanigera
YGR278W	-	84	30.667	ENSCGRG00001017005	-	69	30.572	Cricetulus_griseus_chok1gshd
YGR278W	-	84	30.667	ENSCGRG00000001934	-	55	30.572	Cricetulus_griseus_crigri
YGR278W	-	76	39.000	ENSETEG00000013355	CWC22	63	42.857	Echinops_telfairi
YGR278W	-	83	30.078	ENSEASG00005022287	CWC22	55	30.632	Equus_asinus_asinus
YGR278W	-	83	30.078	ENSECAG00000010769	CWC22	55	30.632	Equus_caballus
YGR278W	-	83	30.078	ENSFCAG00000018982	CWC22	55	30.632	Felis_catus
YGR278W	-	82	30.876	ENSFDAG00000010857	CWC22	55	31.076	Fukomys_damarensis
YGR278W	-	82	30.219	ENSFHEG00000009620	cwc22	50	30.417	Fundulus_heteroclitus
YGR278W	-	83	30.620	ENSGMOG00000009084	cwc22	81	30.814	Gadus_morhua
YGR278W	-	84	30.134	ENSHGLG00000005692	CWC22	56	30.382	Heterocephalus_glaber_female
YGR278W	-	84	30.134	ENSHGLG00100016497	CWC22	71	30.382	Heterocephalus_glaber_male
YGR278W	-	82	30.140	ENSHCOG00000004206	cwc22	59	30.140	Hippocampus_comes
YGR278W	-	83	30.137	ENSSTOG00000009788	CWC22	55	30.693	Ictidomys_tridecemlineatus
YGR278W	-	84	30.077	ENSJJAG00000017012	-	55	30.632	Jaculus_jaculus
YGR278W	-	82	30.020	ENSLOCG00000006456	cwc22	52	30.099	Lepisosteus_oculatus
YGR278W	-	84	30.402	ENSLAFG00000014802	CWC22	55	30.572	Loxodonta_africana
YGR278W	-	73	31.729	ENSMAUG00000016154	-	57	31.663	Mesocricetus_auratus
YGR278W	-	84	30.402	ENSMICG00000016919	CWC22	56	30.769	Microcebus_murinus
YGR278W	-	83	30.000	ENSMODG00000010233	-	55	30.693	Monodelphis_domestica
YGR278W	-	82	31.612	ENSMODG00000003711	-	89	31.612	Monodelphis_domestica
YGR278W	-	82	31.809	ENSMODG00000020117	-	89	31.809	Monodelphis_domestica
YGR278W	-	84	30.667	MGP_CAROLIEiJ_G0023696	-	68	30.769	Mus_caroli
YGR278W	-	84	30.377	ENSMUSG00000096337	Gm13694	60	30.469	Mus_musculus
YGR278W	-	84	30.377	ENSMUSG00000096484	Gm13696	60	30.469	Mus_musculus
YGR278W	-	84	30.377	ENSMUSG00000094336	Gm13693	60	30.469	Mus_musculus
YGR278W	-	84	30.377	ENSMUSG00000094125	Gm13698	60	30.469	Mus_musculus
YGR278W	-	84	30.667	ENSMUSG00000027014	Cwc22	69	30.769	Mus_musculus
YGR278W	-	84	30.377	ENSMUSG00000079247	Gm13691	60	30.469	Mus_musculus
YGR278W	-	84	30.377	ENSMUSG00000096729	Gm13695	60	30.469	Mus_musculus
YGR278W	-	84	30.377	ENSMUSG00000095824	Gm13697	60	30.469	Mus_musculus
YGR278W	-	84	30.667	MGP_PahariEiJ_G0025147	-	68	30.572	Mus_pahari
YGR278W	-	83	30.078	ENSMPUG00000002432	CWC22	55	30.632	Mustela_putorius_furo
YGR278W	-	84	30.233	ENSMLUG00000024966	-	62	30.815	Myotis_lucifugus
YGR278W	-	84	30.058	ENSMLUG00000013437	-	59	30.632	Myotis_lucifugus
YGR278W	-	80	30.691	ENSMEUG00000011026	CWC22	87	30.488	Notamacropus_eugenii
YGR278W	-	70	31.674	ENSOPRG00000007844	CWC22	53	31.674	Ochotona_princeps
YGR278W	-	70	31.566	ENSODEG00000005934	-	66	31.807	Octodon_degus
YGR278W	-	81	30.237	ENSODEG00000007673	CWC22	80	30.040	Octodon_degus
YGR278W	-	82	30.495	ENSOANG00000008649	CWC22	65	30.495	Ornithorhynchus_anatinus
YGR278W	-	82	30.800	ENSOMEG00000015199	cwc22	52	30.800	Oryzias_melastigma
YGR278W	-	83	30.078	ENSOARG00000016905	CWC22	55	30.632	Ovis_aries
YGR278W	-	83	30.078	ENSPPRG00000001389	CWC22	55	30.632	Panthera_pardus
YGR278W	-	83	30.078	ENSPTIG00000019139	CWC22	55	30.632	Panthera_tigris_altaica
YGR278W	-	83	30.000	ENSPCIG00000009903	-	69	30.693	Phascolarctos_cinereus
YGR278W	-	84	30.237	ENSRNOG00000012651	Cwc22	54	30.738	Rattus_norvegicus
YGR278W	-	82	30.196	ENSSHAG00000016596	-	57	30.588	Sarcophilus_harrisii
YGR278W	-	82	30.020	ENSSDUG00000010656	cwc22	50	30.219	Seriola_dumerili
YGR278W	-	82	30.219	ENSSLDG00000023157	cwc22	71	30.417	Seriola_lalandi_dorsalis
YGR278W	-	83	30.078	ENSSSCG00000016008	CWC22	55	30.632	Sus_scrofa
YGR278W	-	83	30.078	ENSTTRG00000012142	CWC22	55	30.648	Tursiops_truncatus
YGR278W	-	83	30.078	ENSUAMG00000010342	CWC22	55	30.632	Ursus_americanus
YGR278W	-	83	30.078	ENSUMAG00000016730	CWC22	55	30.632	Ursus_maritimus
YGR278W	-	82	30.237	ENSVPAG00000008565	CWC22	55	30.632	Vicugna_pacos
YGR278W	-	83	30.078	ENSVVUG00000009738	CWC22	55	30.632	Vulpes_vulpes
YGR278W	-	82	30.118	ENSXETG00000014099	cwc22	64	30.572	Xenopus_tropicalis