EuRBPDB

Description

Ensembl ID: YHL033C (Gene tree)
Gene ID: -
Gene Symbol: RPL8A
Alias: MAK7
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 771
Position: chrVIII:35255-36025
Accession: S000001025
RBP type: canonical RBP
Summary: Ribosomal 60S subunit protein L8A%3B required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit%3B depletion leads to a turnover of pre-rRNA%3B L8 binds to Domain I of 25S and 5.8 S rRNAs%3B mutation results in decreased amounts of free 60S subunits%3B homologous to mammalian ribosomal protein L7A%2C no bacterial homolog%3B RPL8A has a paralog%2C RPL8B%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YHL033C_mRNA	Ribosomal_L7Ae	PF01248.26	2.5e-24	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl.PAR_CL & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	BioRadArray & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YHL033C_mRNA	-	771	-	YHL033C_mRNA	256 (aa)	-	P17076

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YHL033C	RPL8A	100	97.266	YLL045C	RPL8B	100	97.266

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YHL033C	RPL8A	93	50.211	WBGene00004419	rpl-7A	91	50.617	Caenorhabditis_elegans
YHL033C	RPL8A	97	56.126	FBgn0014026	RpL7A	93	56.641	Drosophila_melanogaster