EuRBPDB

Description

Ensembl ID: YHR020W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Prolyl-tRNA synthetase%3B N-terminal domain shows weak homology to prokaryotic posttransfer editing domain%2C but does not possess posttransfer editing activity%3B may interact with ribosomes%2C based on co-purification experiments
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 2067 bases
Position: chrVIII:143996-146062
Accession: S000001062
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YHR020W_mRNA	HGTP_anticodon	PF03129.20	2e-20	1	1
YHR020W_mRNA	tRNA-synt_2b	PF00587.25	2.3e-15	1	1
YHR020W_mRNA	ProRS-C_1	PF09180.11	1.3e-25	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YHR020W_mRNA	-	2067	-	YHR020W_mRNA	688 (aa)	-	P38708

Gene Model

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YHR020W	-	73	55.621	WBGene00004189	pars-1	80	64.033	Caenorhabditis_elegans
YHR020W	-	73	56.719	ENSEBUG00000016088	-	95	56.719	Eptatretus_burgeri
YHR020W	-	73	57.312	ENSPLAG00000023121	-	77	57.312	Poecilia_latipinna