EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YHR065C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Protein involved in rRNA processing%3B required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA%3B homologous to eIF-4a%2C which is a DEAD box RNA-dependent ATPase with helicase activity
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1506 bases
Position: chrVIII:227532-229037
Accession: S000001107
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YHR065C_mRNA	ResIII	PF04851.15	3.2e-07	1	1
YHR065C_mRNA	DEAD	PF00270.29	3.9e-50	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YHR065C_mRNA	-	1506	-	YHR065C_mRNA	501 (aa)	-	P38712

Gene Model

Click here to download YHR065C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YHR065C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YHR065C	-	77	35.714	YMR290C	-	75	37.435
YHR065C	-	71	34.987	YDR243C	-	64	34.987
YHR065C	-	68	33.515	YFL002C	-	60	33.515
YHR065C	-	80	31.250	YGL171W	-	71	31.250
YHR065C	-	66	31.282	YNR038W	-	61	31.282
YHR065C	-	79	42.543	YHR169W	-	95	42.543
YHR065C	-	75	31.579	YDL160C	-	75	31.579
YHR065C	-	69	34.807	YOR046C	DBP5	73	34.807
YHR065C	-	74	31.367	YKR059W	TIF1	94	31.367
YHR065C	-	66	36.657	YGL078C	-	65	36.657
YHR065C	-	74	31.593	YDL084W	-	85	31.593
YHR065C	-	72	31.880	YDR021W	-	91	31.880
YHR065C	-	71	30.913	YLR276C	-	71	30.913
YHR065C	-	72	36.483	YOR204W	DED1	61	37.057
YHR065C	-	64	30.827	YKR024C	-	54	30.576
YHR065C	-	70	31.567	YBR142W	-	55	31.567
YHR065C	-	81	34.368	YNL112W	-	65	36.944
YHR065C	-	79	36.867	YPL119C	DBP1	67	36.406
YHR065C	-	69	34.615	YDR194C	-	57	34.447
YHR065C	-	74	31.367	YJL138C	TIF2	94	31.367

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YHR065C	-	82	56.724	ENSG00000213782	DDX47	89	56.724	Homo_sapiens
YHR065C	-	80	54.839	ENSAPOG00000021751	ddx47	85	54.854	Acanthochromis_polyacanthus
YHR065C	-	84	55.083	ENSAMEG00000010740	DDX47	91	55.083	Ailuropoda_melanoleuca
YHR065C	-	88	51.685	ENSACIG00000022802	ddx47	85	54.015	Amphilophus_citrinellus
YHR065C	-	86	51.852	ENSAOCG00000015213	ddx47	85	54.854	Amphiprion_ocellaris
YHR065C	-	86	51.852	ENSAPEG00000014476	ddx47	90	56.041	Amphiprion_percula
YHR065C	-	83	55.288	ENSATEG00000010277	ddx47	86	55.288	Anabas_testudineus
YHR065C	-	80	56.468	ENSAPLG00000015324	DDX47	87	56.468	Anas_platyrhynchos
YHR065C	-	81	55.802	ENSACAG00000010648	DDX47	91	55.802	Anolis_carolinensis
YHR065C	-	70	59.943	ENSANAG00000025235	DDX47	95	59.943	Aotus_nancymaae
YHR065C	-	85	53.864	ENSAMXG00000010727	ddx47	87	54.988	Astyanax_mexicanus
YHR065C	-	82	56.235	ENSBTAG00000019608	DDX47	89	56.235	Bos_taurus
YHR065C	-	84	51.905	WBGene00012059	T26G10.1	92	49.455	Caenorhabditis_elegans
YHR065C	-	83	55.635	ENSCJAG00000021633	DDX47	91	58.824	Callithrix_jacchus
YHR065C	-	81	56.188	ENSCAFG00000013224	DDX47	84	56.188	Canis_familiaris
YHR065C	-	81	56.188	ENSCAFG00020006612	DDX47	88	56.188	Canis_lupus_dingo
YHR065C	-	84	54.739	ENSCHIG00000026011	DDX47	91	54.739	Capra_hircus
YHR065C	-	82	56.724	ENSTSYG00000002978	DDX47	89	56.724	Carlito_syrichta
YHR065C	-	82	55.932	ENSCPOG00000035172	DDX47	89	56.235	Cavia_porcellus
YHR065C	-	82	56.724	ENSCCAG00000025717	DDX47	89	56.724	Cebus_capucinus
YHR065C	-	50	55.422	ENSCATG00000038188	-	96	55.328	Cercocebus_atys
YHR065C	-	83	56.039	ENSCATG00000014281	-	91	56.039	Cercocebus_atys
YHR065C	-	81	56.373	ENSCLAG00000015856	DDX47	89	56.373	Chinchilla_lanigera
YHR065C	-	82	56.724	ENSCSAG00000008569	DDX47	89	56.724	Chlorocebus_sabaeus
YHR065C	-	62	47.249	ENSCHOG00000010943	DDX47	66	47.249	Choloepus_hoffmanni
YHR065C	-	84	54.739	ENSCPBG00000020967	-	88	56.533	Chrysemys_picta_bellii
YHR065C	-	82	52.530	ENSCING00000002081	-	92	52.530	Ciona_intestinalis
YHR065C	-	82	53.623	ENSCSAVG00000011566	-	93	53.623	Ciona_savignyi
YHR065C	-	82	56.724	ENSCANG00000040222	DDX47	89	56.724	Colobus_angolensis_palliatus
YHR065C	-	80	56.391	ENSCGRG00001014927	Ddx47	89	56.188	Cricetulus_griseus_chok1gshd
YHR065C	-	80	56.391	ENSCGRG00000010351	Ddx47	91	56.188	Cricetulus_griseus_crigri
YHR065C	-	80	54.950	ENSCSEG00000007687	ddx47	88	55.641	Cynoglossus_semilaevis
YHR065C	-	81	50.985	ENSDNOG00000040799	DDX47	89	50.985	Dasypus_novemcinctus
YHR065C	-	85	51.395	FBgn0032919	CG9253	87	50.448	Drosophila_melanogaster
YHR065C	-	56	49.291	ENSETEG00000011487	DDX47	68	49.291	Echinops_telfairi
YHR065C	-	81	56.436	ENSEASG00005014653	DDX47	89	56.436	Equus_asinus_asinus
YHR065C	-	81	56.436	ENSECAG00000023622	DDX47	89	56.436	Equus_caballus
YHR065C	-	61	56.209	ENSEEUG00000008639	DDX47	66	56.209	Erinaceus_europaeus
YHR065C	-	84	53.682	ENSELUG00000009495	ddx47	77	54.768	Esox_lucius
YHR065C	-	80	56.468	ENSFCAG00000013990	DDX47	88	56.468	Felis_catus
YHR065C	-	80	56.608	ENSFALG00000011391	DDX47	90	55.448	Ficedula_albicollis
YHR065C	-	86	53.776	ENSFDAG00000014635	-	95	53.776	Fukomys_damarensis
YHR065C	-	83	55.263	ENSFHEG00000011435	ddx47	87	55.263	Fundulus_heteroclitus
YHR065C	-	75	55.882	ENSGMOG00000010290	ddx47	97	55.882	Gadus_morhua
YHR065C	-	80	56.608	ENSGALG00000011794	DDX47	89	56.296	Gallus_gallus
YHR065C	-	83	54.197	ENSGAFG00000017403	ddx47	87	54.197	Gambusia_affinis
YHR065C	-	83	55.024	ENSGACG00000007092	ddx47	90	55.529	Gasterosteus_aculeatus
YHR065C	-	81	56.188	ENSGAGG00000023801	DDX47	81	56.188	Gopherus_agassizii
YHR065C	-	82	56.724	ENSGGOG00000005882	DDX47	89	56.724	Gorilla_gorilla
YHR065C	-	87	52.273	ENSHBUG00000022213	ddx47	87	53.810	Haplochromis_burtoni
YHR065C	-	87	53.196	ENSHGLG00000007623	DDX47	91	54.502	Heterocephalus_glaber_female
YHR065C	-	87	53.196	ENSHGLG00100009764	DDX47	91	54.502	Heterocephalus_glaber_male
YHR065C	-	84	54.695	ENSHCOG00000005496	ddx47	88	54.695	Hippocampus_comes
YHR065C	-	82	52.927	ENSIPUG00000023788	ddx47	87	52.927	Ictalurus_punctatus
YHR065C	-	77	57.732	ENSSTOG00000027266	DDX47	88	57.732	Ictidomys_tridecemlineatus
YHR065C	-	82	55.932	ENSJJAG00000000118	Ddx47	91	55.875	Jaculus_jaculus
YHR065C	-	82	53.995	ENSKMAG00000013071	ddx47	84	53.735	Kryptolebias_marmoratus
YHR065C	-	81	55.062	ENSLBEG00000028348	ddx47	85	54.458	Labrus_bergylta
YHR065C	-	79	55.919	ENSLACG00000013814	DDX47	87	55.919	Latimeria_chalumnae
YHR065C	-	82	56.479	ENSLAFG00000015474	DDX47	90	56.479	Loxodonta_africana
YHR065C	-	82	56.724	ENSMFAG00000042577	DDX47	89	56.724	Macaca_fascicularis
YHR065C	-	82	56.724	ENSMMUG00000017993	DDX47	89	56.724	Macaca_mulatta
YHR065C	-	65	58.537	ENSMNEG00000044164	DDX47	77	58.537	Macaca_nemestrina
YHR065C	-	83	56.039	ENSMLEG00000040358	-	91	56.039	Mandrillus_leucophaeus
YHR065C	-	83	53.846	ENSMAMG00000008915	ddx47	86	53.846	Mastacembelus_armatus
YHR065C	-	87	43.018	ENSMZEG00005004902	DDX47	87	44.104	Maylandia_zebra
YHR065C	-	78	32.398	ENSMZEG00005022989	-	86	33.065	Maylandia_zebra
YHR065C	-	78	57.033	ENSMGAG00000011857	DDX47	90	57.033	Meleagris_gallopavo
YHR065C	-	81	55.637	ENSMAUG00000012214	Ddx47	89	55.637	Mesocricetus_auratus
YHR065C	-	56	57.500	ENSMICG00000010086	DDX47	89	57.971	Microcebus_murinus
YHR065C	-	81	55.637	ENSMOCG00000003693	Ddx47	89	55.637	Microtus_ochrogaster
YHR065C	-	84	50.118	ENSMMOG00000008610	ddx47	91	50.118	Mola_mola
YHR065C	-	80	56.140	ENSMODG00000018223	DDX47	87	56.140	Monodelphis_domestica
YHR065C	-	88	52.262	ENSMALG00000002420	ddx47	86	55.529	Monopterus_albus
YHR065C	-	81	55.637	MGP_CAROLIEiJ_G0028986	Ddx47	97	53.964	Mus_caroli
YHR065C	-	81	55.637	ENSMUSG00000030204	Ddx47	96	53.964	Mus_musculus
YHR065C	-	81	56.188	MGP_PahariEiJ_G0022748	Ddx47	91	56.486	Mus_pahari
YHR065C	-	81	55.637	MGP_SPRETEiJ_G0030034	Ddx47	97	53.964	Mus_spretus
YHR065C	-	82	56.479	ENSMPUG00000011726	DDX47	89	56.479	Mustela_putorius_furo
YHR065C	-	81	55.941	ENSMLUG00000003163	DDX47	89	55.941	Myotis_lucifugus
YHR065C	-	81	55.637	ENSNGAG00000020166	Ddx47	89	55.637	Nannospalax_galili
YHR065C	-	87	52.273	ENSNBRG00000001394	ddx47	88	53.810	Neolamprologus_brichardi
YHR065C	-	82	56.479	ENSNLEG00000003605	DDX47	89	56.479	Nomascus_leucogenys
YHR065C	-	73	49.041	ENSMEUG00000005930	DDX47	92	49.041	Notamacropus_eugenii
YHR065C	-	55	56.522	ENSOPRG00000014446	DDX47	60	56.522	Ochotona_princeps
YHR065C	-	81	56.436	ENSODEG00000012890	DDX47	88	56.235	Octodon_degus
YHR065C	-	83	53.571	ENSONIG00000008325	ddx47	93	53.571	Oreochromis_niloticus
YHR065C	-	52	55.303	ENSOANG00000003026	-	92	55.094	Ornithorhynchus_anatinus
YHR065C	-	81	56.436	ENSOCUG00000014390	DDX47	91	55.635	Oryctolagus_cuniculus
YHR065C	-	83	53.846	ENSORLG00000015021	ddx47	85	53.846	Oryzias_latipes
YHR065C	-	83	53.606	ENSORLG00020005546	ddx47	89	54.707	Oryzias_latipes_hni
YHR065C	-	83	53.846	ENSORLG00015017712	ddx47	85	53.846	Oryzias_latipes_hsok
YHR065C	-	81	54.300	ENSOMEG00000008065	ddx47	86	54.436	Oryzias_melastigma
YHR065C	-	84	51.659	ENSOGAG00000003748	DDX47	92	51.659	Otolemur_garnettii
YHR065C	-	84	54.739	ENSOARG00000020845	DDX47	88	54.739	Ovis_aries
YHR065C	-	82	56.724	ENSPPAG00000039793	DDX47	89	56.724	Pan_paniscus
YHR065C	-	81	56.188	ENSPPRG00000017561	DDX47	89	56.188	Panthera_pardus
YHR065C	-	81	56.188	ENSPTIG00000019604	DDX47	89	56.188	Panthera_tigris_altaica
YHR065C	-	82	56.724	ENSPTRG00000033743	DDX47	89	56.724	Pan_troglodytes
YHR065C	-	82	56.724	ENSPANG00000016430	DDX47	89	56.724	Papio_anubis
YHR065C	-	83	54.106	ENSPKIG00000006718	ddx47	85	55.754	Paramormyrops_kingsleyae
YHR065C	-	77	56.959	ENSPSIG00000006056	DDX47	85	56.959	Pelodiscus_sinensis
YHR065C	-	82	53.237	ENSPMGG00000009920	ddx47	89	53.286	Periophthalmus_magnuspinnatus
YHR065C	-	81	55.941	ENSPEMG00000009746	Ddx47	89	55.941	Peromyscus_maniculatus_bairdii
YHR065C	-	77	57.216	ENSPMAG00000000186	-	92	57.216	Petromyzon_marinus
YHR065C	-	84	54.177	ENSPCIG00000029927	DDX47	88	55.941	Phascolarctos_cinereus
YHR065C	-	88	52.027	ENSPFOG00000003330	ddx47	84	54.436	Poecilia_formosa
YHR065C	-	78	51.269	ENSPLAG00000014318	ddx47	83	51.269	Poecilia_latipinna
YHR065C	-	88	52.703	ENSPMEG00000018616	ddx47	84	54.436	Poecilia_mexicana
YHR065C	-	86	52.184	ENSPREG00000015560	ddx47	87	52.029	Poecilia_reticulata
YHR065C	-	82	56.724	ENSPPYG00000004309	DDX47	89	56.724	Pongo_abelii
YHR065C	-	81	56.436	ENSPCOG00000028218	DDX47	89	56.436	Propithecus_coquereli
YHR065C	-	81	54.433	ENSPVAG00000002640	DDX47	89	54.433	Pteropus_vampyrus
YHR065C	-	87	52.273	ENSPNYG00000020669	ddx47	87	53.810	Pundamilia_nyererei
YHR065C	-	83	54.567	ENSPNAG00000011435	ddx47	88	54.699	Pygocentrus_nattereri
YHR065C	-	81	55.637	ENSRNOG00000007838	Ddx47	89	55.637	Rattus_norvegicus
YHR065C	-	82	56.724	ENSRBIG00000026934	DDX47	89	56.724	Rhinopithecus_bieti
YHR065C	-	82	56.724	ENSRROG00000025014	DDX47	89	56.724	Rhinopithecus_roxellana
YHR065C	-	81	56.683	ENSSBOG00000035866	DDX47	89	56.683	Saimiri_boliviensis_boliviensis
YHR065C	-	85	55.164	ENSSHAG00000010825	DDX47	78	55.941	Sarcophilus_harrisii
YHR065C	-	83	54.327	ENSSFOG00015013392	ddx47	88	54.327	Scleropages_formosus
YHR065C	-	82	54.126	ENSSMAG00000004179	ddx47	85	53.477	Scophthalmus_maximus
YHR065C	-	79	55.919	ENSSDUG00000018110	ddx47	75	55.919	Seriola_dumerili
YHR065C	-	88	52.144	ENSSLDG00000018142	ddx47	84	54.785	Seriola_lalandi_dorsalis
YHR065C	-	58	55.479	ENSSARG00000007535	DDX47	97	54.795	Sorex_araneus
YHR065C	-	77	56.186	ENSSPUG00000004958	DDX47	85	56.186	Sphenodon_punctatus
YHR065C	-	80	54.094	ENSSPAG00000016431	ddx47	83	54.369	Stegastes_partitus
YHR065C	-	84	54.976	ENSSSCG00000033149	DDX47	90	56.158	Sus_scrofa
YHR065C	-	80	56.359	ENSTGUG00000009385	DDX47	90	55.911	Taeniopygia_guttata
YHR065C	-	90	51.441	ENSTRUG00000021826	ddx47	92	51.441	Takifugu_rubripes
YHR065C	-	71	57.303	ENSTBEG00000013697	DDX47	78	57.303	Tupaia_belangeri
YHR065C	-	85	54.060	ENSTTRG00000015036	DDX47	95	54.060	Tursiops_truncatus
YHR065C	-	81	56.436	ENSUAMG00000016382	DDX47	79	75.000	Ursus_americanus
YHR065C	-	81	56.436	ENSUMAG00000002358	DDX47	89	56.436	Ursus_maritimus
YHR065C	-	69	41.618	ENSVPAG00000012483	-	98	41.618	Vicugna_pacos
YHR065C	-	81	56.188	ENSVVUG00000004697	DDX47	84	56.188	Vulpes_vulpes
YHR065C	-	81	55.556	ENSXETG00000022984	ddx47	90	55.556	Xenopus_tropicalis
YHR065C	-	83	54.197	ENSXCOG00000015880	ddx47	87	54.197	Xiphophorus_couchianus
YHR065C	-	83	54.197	ENSXMAG00000008268	ddx47	78	54.197	Xiphophorus_maculatus