EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YHR069C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Exosome non-catalytic core component%3B involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm%3B predicted to contain RNA binding domains%3B has similarity to human hRrp4p (EXOSC2)
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1080 bases
Position: chrVIII:233579-234658
Accession: S000001111
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YHR069C_mRNA	ECR1_N	PF14382.6	1.6e-17	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YHR069C_mRNA	-	1080	-	YHR069C_mRNA	359 (aa)	-	P38792

Gene Model

Click here to download YHR069C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YHR069C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YHR069C	-	82	41.554	ENSG00000130713	EXOSC2	86	50.000	Homo_sapiens
YHR069C	-	83	40.940	ENSAPOG00000008861	exosc2	95	40.940	Acanthochromis_polyacanthus
YHR069C	-	82	40.541	ENSAMEG00000016239	EXOSC2	89	40.541	Ailuropoda_melanoleuca
YHR069C	-	84	41.860	ENSACIG00000019054	exosc2	90	41.860	Amphilophus_citrinellus
YHR069C	-	84	41.528	ENSAOCG00000008577	exosc2	90	41.528	Amphiprion_ocellaris
YHR069C	-	84	41.528	ENSAOCG00000004983	exosc2	90	41.528	Amphiprion_ocellaris
YHR069C	-	84	41.528	ENSAPEG00000014088	exosc2	90	41.528	Amphiprion_percula
YHR069C	-	87	41.987	ENSATEG00000018680	exosc2	94	41.987	Anabas_testudineus
YHR069C	-	82	41.695	ENSAPLG00000012516	EXOSC2	89	41.695	Anas_platyrhynchos
YHR069C	-	83	42.140	ENSACAG00000002706	EXOSC2	90	42.140	Anolis_carolinensis
YHR069C	-	87	42.308	ENSACLG00000013613	exosc2	94	42.308	Astatotilapia_calliptera
YHR069C	-	81	41.096	ENSAMXG00000042605	exosc2	87	41.096	Astyanax_mexicanus
YHR069C	-	82	41.892	ENSBTAG00000048071	EXOSC2	89	41.892	Bos_taurus
YHR069C	-	84	38.742	WBGene00022232	exos-2	88	38.742	Caenorhabditis_elegans
YHR069C	-	82	41.216	ENSCJAG00000020537	EXOSC2	89	41.216	Callithrix_jacchus
YHR069C	-	82	41.216	ENSCAFG00000019941	EXOSC2	89	41.216	Canis_familiaris
YHR069C	-	82	41.216	ENSCAFG00020024047	EXOSC2	89	41.216	Canis_lupus_dingo
YHR069C	-	82	41.892	ENSCHIG00000021398	EXOSC2	89	41.892	Capra_hircus
YHR069C	-	82	40.878	ENSTSYG00000001805	EXOSC2	89	40.878	Carlito_syrichta
YHR069C	-	77	41.367	ENSCPOG00000005902	EXOSC2	83	41.367	Cavia_porcellus
YHR069C	-	82	40.541	ENSCCAG00000019749	EXOSC2	89	40.541	Cebus_capucinus
YHR069C	-	82	41.216	ENSCATG00000025389	-	89	41.216	Cercocebus_atys
YHR069C	-	84	40.924	ENSCLAG00000006195	EXOSC2	91	40.924	Chinchilla_lanigera
YHR069C	-	82	41.216	ENSCSAG00000014760	EXOSC2	89	41.216	Chlorocebus_sabaeus
YHR069C	-	82	41.946	ENSCHOG00000000858	EXOSC2	90	41.946	Choloepus_hoffmanni
YHR069C	-	82	42.373	ENSCPBG00000022626	EXOSC2	88	42.373	Chrysemys_picta_bellii
YHR069C	-	82	44.257	ENSCING00000014934	-	87	44.257	Ciona_intestinalis
YHR069C	-	78	41.053	ENSCSAVG00000003684	-	91	41.053	Ciona_savignyi
YHR069C	-	82	41.216	ENSCANG00000039828	-	89	41.216	Colobus_angolensis_palliatus
YHR069C	-	53	49.474	ENSCANG00000029298	-	64	49.474	Colobus_angolensis_palliatus
YHR069C	-	82	40.203	ENSCGRG00001013981	Exosc2	89	40.203	Cricetulus_griseus_chok1gshd
YHR069C	-	82	40.203	ENSCGRG00000017629	Exosc2	89	40.203	Cricetulus_griseus_crigri
YHR069C	-	84	41.528	ENSCSEG00000016539	exosc2	90	41.528	Cynoglossus_semilaevis
YHR069C	-	84	41.528	ENSCVAG00000022260	exosc2	90	41.528	Cyprinodon_variegatus
YHR069C	-	84	41.914	ENSDARG00000028688	exosc2	91	41.914	Danio_rerio
YHR069C	-	53	54.737	ENSDNOG00000025767	-	71	54.737	Dasypus_novemcinctus
YHR069C	-	82	40.541	ENSDORG00000009238	Exosc2	89	40.541	Dipodomys_ordii
YHR069C	-	84	41.528	FBgn0034879	Rrp4	90	42.053	Drosophila_melanogaster
YHR069C	-	82	41.216	ENSEASG00005008475	EXOSC2	77	41.216	Equus_asinus_asinus
YHR069C	-	82	41.216	ENSECAG00000007897	EXOSC2	76	41.216	Equus_caballus
YHR069C	-	81	41.924	ENSELUG00000013641	exosc2	86	41.924	Esox_lucius
YHR069C	-	82	40.541	ENSFCAG00000025936	EXOSC2	89	40.541	Felis_catus
YHR069C	-	84	40.594	ENSFALG00000001446	EXOSC2	91	40.594	Ficedula_albicollis
YHR069C	-	82	39.604	ENSFDAG00000017196	EXOSC2	89	39.604	Fukomys_damarensis
YHR069C	-	87	41.987	ENSFHEG00000018571	exosc2	94	41.987	Fundulus_heteroclitus
YHR069C	-	84	39.867	ENSGMOG00000011785	exosc2	89	39.867	Gadus_morhua
YHR069C	-	82	41.497	ENSGALG00000040373	EXOSC2	88	41.497	Gallus_gallus
YHR069C	-	87	41.987	ENSGAFG00000010283	exosc2	94	41.987	Gambusia_affinis
YHR069C	-	84	42.053	ENSGACG00000016805	exosc2	84	58.865	Gasterosteus_aculeatus
YHR069C	-	78	41.958	ENSGAGG00000021026	EXOSC2	94	41.958	Gopherus_agassizii
YHR069C	-	82	41.554	ENSGGOG00000010578	EXOSC2	89	41.554	Gorilla_gorilla
YHR069C	-	87	41.987	ENSHBUG00000022437	exosc2	94	41.987	Haplochromis_burtoni
YHR069C	-	82	40.541	ENSHGLG00000012834	EXOSC2	89	40.541	Heterocephalus_glaber_female
YHR069C	-	82	40.541	ENSHGLG00100007092	EXOSC2	89	40.541	Heterocephalus_glaber_male
YHR069C	-	87	40.705	ENSHCOG00000019130	exosc2	94	40.705	Hippocampus_comes
YHR069C	-	84	42.193	ENSIPUG00000015397	exosc2	90	42.193	Ictalurus_punctatus
YHR069C	-	81	41.781	ENSSTOG00000005999	EXOSC2	87	41.781	Ictidomys_tridecemlineatus
YHR069C	-	82	41.554	ENSJJAG00000003188	Exosc2	89	41.554	Jaculus_jaculus
YHR069C	-	89	40.938	ENSKMAG00000017397	exosc2	97	40.938	Kryptolebias_marmoratus
YHR069C	-	84	41.196	ENSLBEG00000019269	exosc2	90	41.196	Labrus_bergylta
YHR069C	-	84	42.193	ENSLACG00000015530	EXOSC2	90	42.193	Latimeria_chalumnae
YHR069C	-	82	41.414	ENSLAFG00000006984	EXOSC2	89	41.414	Loxodonta_africana
YHR069C	-	82	41.216	ENSMFAG00000000597	-	89	41.216	Macaca_fascicularis
YHR069C	-	82	40.541	ENSMMUG00000012498	EXOSC2	88	40.541	Macaca_mulatta
YHR069C	-	82	41.216	ENSMNEG00000031861	-	89	41.216	Macaca_nemestrina
YHR069C	-	82	41.216	ENSMLEG00000042587	-	89	41.216	Mandrillus_leucophaeus
YHR069C	-	84	41.528	ENSMAMG00000012466	exosc2	91	41.958	Mastacembelus_armatus
YHR069C	-	87	42.308	ENSMZEG00005018737	exosc2	94	42.308	Maylandia_zebra
YHR069C	-	84	40.594	ENSMGAG00000005450	EXOSC2	91	40.594	Meleagris_gallopavo
YHR069C	-	82	40.878	ENSMAUG00000008299	Exosc2	89	40.878	Mesocricetus_auratus
YHR069C	-	82	41.216	ENSMICG00000015495	EXOSC2	89	41.216	Microcebus_murinus
YHR069C	-	82	40.541	ENSMOCG00000008262	Exosc2	89	40.541	Microtus_ochrogaster
YHR069C	-	87	42.628	ENSMMOG00000009616	exosc2	94	42.628	Mola_mola
YHR069C	-	82	41.892	ENSMODG00000012114	EXOSC2	89	41.892	Monodelphis_domestica
YHR069C	-	84	41.860	ENSMALG00000022132	exosc2	90	41.860	Monopterus_albus
YHR069C	-	82	40.541	MGP_CAROLIEiJ_G0023415	Exosc2	89	40.541	Mus_caroli
YHR069C	-	82	40.541	ENSMUSG00000039356	Exosc2	89	40.541	Mus_musculus
YHR069C	-	82	40.203	MGP_PahariEiJ_G0024872	Exosc2	89	40.203	Mus_pahari
YHR069C	-	82	40.541	MGP_SPRETEiJ_G0024332	Exosc2	89	40.541	Mus_spretus
YHR069C	-	82	40.878	ENSMPUG00000012686	EXOSC2	89	40.878	Mustela_putorius_furo
YHR069C	-	82	40.604	ENSMLUG00000008776	EXOSC2	89	40.604	Myotis_lucifugus
YHR069C	-	82	41.216	ENSNGAG00000019383	Exosc2	89	41.216	Nannospalax_galili
YHR069C	-	87	41.667	ENSNBRG00000005453	exosc2	94	41.667	Neolamprologus_brichardi
YHR069C	-	82	41.554	ENSNLEG00000012533	EXOSC2	89	41.554	Nomascus_leucogenys
YHR069C	-	53	47.895	ENSMEUG00000000795	EXOSC2	65	47.895	Notamacropus_eugenii
YHR069C	-	77	42.238	ENSODEG00000019513	-	95	42.238	Octodon_degus
YHR069C	-	82	39.527	ENSODEG00000016880	-	89	39.527	Octodon_degus
YHR069C	-	87	41.987	ENSONIG00000014086	exosc2	94	41.987	Oreochromis_niloticus
YHR069C	-	85	41.447	ENSOANG00000001044	EXOSC2	91	41.447	Ornithorhynchus_anatinus
YHR069C	-	82	40.878	ENSOCUG00000007138	EXOSC2	89	40.878	Oryctolagus_cuniculus
YHR069C	-	87	42.628	ENSORLG00000007443	exosc2	94	42.628	Oryzias_latipes
YHR069C	-	87	42.308	ENSORLG00020018902	exosc2	94	42.308	Oryzias_latipes_hni
YHR069C	-	87	42.308	ENSORLG00015006767	exosc2	94	42.308	Oryzias_latipes_hsok
YHR069C	-	87	41.987	ENSOMEG00000003533	exosc2	94	41.987	Oryzias_melastigma
YHR069C	-	82	40.541	ENSOGAG00000007558	EXOSC2	89	40.541	Otolemur_garnettii
YHR069C	-	82	41.611	ENSOARG00000007438	EXOSC2	89	41.611	Ovis_aries
YHR069C	-	82	41.554	ENSPPAG00000034796	EXOSC2	89	41.554	Pan_paniscus
YHR069C	-	82	40.878	ENSPPRG00000001089	EXOSC2	89	40.878	Panthera_pardus
YHR069C	-	82	40.878	ENSPTIG00000021163	EXOSC2	89	40.878	Panthera_tigris_altaica
YHR069C	-	82	41.554	ENSPTRG00000045766	-	89	41.554	Pan_troglodytes
YHR069C	-	82	41.554	ENSPTRG00000021476	EXOSC2	89	41.554	Pan_troglodytes
YHR069C	-	82	41.216	ENSPANG00000025966	EXOSC2	89	41.216	Papio_anubis
YHR069C	-	83	42.953	ENSPKIG00000004271	exosc2	90	42.953	Paramormyrops_kingsleyae
YHR069C	-	82	42.373	ENSPSIG00000006743	EXOSC2	88	42.373	Pelodiscus_sinensis
YHR069C	-	80	42.509	ENSPMGG00000010980	exosc2	98	42.509	Periophthalmus_magnuspinnatus
YHR069C	-	82	42.230	ENSPEMG00000006345	Exosc2	89	42.230	Peromyscus_maniculatus_bairdii
YHR069C	-	77	43.273	ENSPMAG00000001280	exosc2	87	41.438	Petromyzon_marinus
YHR069C	-	82	41.892	ENSPCIG00000024122	EXOSC2	86	41.892	Phascolarctos_cinereus
YHR069C	-	87	41.534	ENSPFOG00000019819	exosc2	94	41.534	Poecilia_formosa
YHR069C	-	87	41.667	ENSPLAG00000004605	exosc2	94	41.667	Poecilia_latipinna
YHR069C	-	87	41.667	ENSPMEG00000010976	exosc2	94	41.667	Poecilia_mexicana
YHR069C	-	87	41.667	ENSPREG00000014306	exosc2	94	41.667	Poecilia_reticulata
YHR069C	-	82	41.554	ENSPPYG00000019695	EXOSC2	89	41.554	Pongo_abelii
YHR069C	-	84	40.924	ENSPCAG00000013400	EXOSC2	91	40.924	Procavia_capensis
YHR069C	-	82	41.216	ENSPCOG00000017639	EXOSC2	89	41.216	Propithecus_coquereli
YHR069C	-	82	40.541	ENSPVAG00000001513	EXOSC2	89	40.541	Pteropus_vampyrus
YHR069C	-	87	41.987	ENSPNYG00000007383	exosc2	94	41.987	Pundamilia_nyererei
YHR069C	-	84	42.193	ENSPNAG00000014281	exosc2	90	42.193	Pygocentrus_nattereri
YHR069C	-	82	41.554	ENSRNOG00000009245	Exosc2	89	41.554	Rattus_norvegicus
YHR069C	-	53	49.474	ENSRBIG00000029791	-	64	49.474	Rhinopithecus_bieti
YHR069C	-	82	40.878	ENSRBIG00000031203	-	89	40.878	Rhinopithecus_bieti
YHR069C	-	53	48.421	ENSRROG00000043609	-	64	48.421	Rhinopithecus_roxellana
YHR069C	-	82	40.878	ENSRROG00000010827	-	89	40.878	Rhinopithecus_roxellana
YHR069C	-	82	41.216	ENSSBOG00000022712	EXOSC2	89	41.216	Saimiri_boliviensis_boliviensis
YHR069C	-	82	42.230	ENSSHAG00000016050	EXOSC2	89	42.230	Sarcophilus_harrisii
YHR069C	-	86	41.987	ENSSFOG00015011245	exosc2	95	41.987	Scleropages_formosus
YHR069C	-	84	41.860	ENSSMAG00000003112	exosc2	90	41.860	Scophthalmus_maximus
YHR069C	-	84	41.118	ENSSDUG00000004634	exosc2	90	41.118	Seriola_dumerili
YHR069C	-	84	41.528	ENSSLDG00000010616	exosc2	90	41.528	Seriola_lalandi_dorsalis
YHR069C	-	84	41.860	ENSSPUG00000013391	EXOSC2	89	41.860	Sphenodon_punctatus
YHR069C	-	84	41.528	ENSSPAG00000022947	exosc2	90	41.528	Stegastes_partitus
YHR069C	-	82	42.230	ENSSSCG00000005704	EXOSC2	89	42.230	Sus_scrofa
YHR069C	-	84	41.254	ENSTGUG00000004697	EXOSC2	91	41.254	Taeniopygia_guttata
YHR069C	-	52	55.135	ENSTRUG00000022436	exosc2	66	55.135	Takifugu_rubripes
YHR069C	-	82	39.865	ENSTTRG00000015159	EXOSC2	89	39.865	Tursiops_truncatus
YHR069C	-	53	54.211	ENSUAMG00000009651	EXOSC2	68	54.211	Ursus_americanus
YHR069C	-	82	40.541	ENSUMAG00000018726	EXOSC2	92	44.578	Ursus_maritimus
YHR069C	-	82	41.216	ENSVVUG00000027665	EXOSC2	89	41.216	Vulpes_vulpes
YHR069C	-	81	43.151	ENSXETG00000001340	exosc2	87	43.151	Xenopus_tropicalis
YHR069C	-	87	41.667	ENSXMAG00000005265	exosc2	94	41.667	Xiphophorus_maculatus