EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YHR089C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Protein component of the H/ACA snoRNP pseudouridylase complex%3B involved in the modification and cleavage of the 18S pre-rRNA
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 618 bases
Position: chrVIII:282681-283298
Accession: S000001131
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YHR089C_mRNA	Gar1	PF04410.14	1.1e-39	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YHR089C_mRNA	-	618	-	YHR089C_mRNA	205 (aa)	-	P28007

Gene Model

Click here to download YHR089C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YHR089C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YHR089C	-	82	51.754	ENSCPOG00000004216	GAR1	70	49.275	Cavia_porcellus
YHR089C	-	89	50.413	ENSCATG00000021854	GAR1	74	49.655	Cercocebus_atys
YHR089C	-	78	48.092	ENSCSAG00000003922	GAR1	61	52.846	Chlorocebus_sabaeus
YHR089C	-	61	47.656	ENSCHOG00000012404	-	55	52.756	Choloepus_hoffmanni
YHR089C	-	58	50.000	ENSCING00000005744	-	57	52.137	Ciona_intestinalis
YHR089C	-	57	47.899	ENSCGRG00000010165	-	80	50.926	Cricetulus_griseus_crigri
YHR089C	-	77	48.062	FBgn0011824	CG4038	70	47.934	Drosophila_melanogaster
YHR089C	-	84	47.899	ENSGALG00000020164	GAR1	56	48.800	Gallus_gallus
YHR089C	-	65	48.529	ENSLACG00000003306	GAR1	77	50.781	Latimeria_chalumnae
YHR089C	-	89	50.413	ENSMFAG00000024592	GAR1	74	49.655	Macaca_fascicularis
YHR089C	-	89	50.413	ENSMNEG00000042594	GAR1	74	49.655	Macaca_nemestrina
YHR089C	-	89	50.413	ENSMLEG00000002496	GAR1	74	49.655	Mandrillus_leucophaeus
YHR089C	-	71	52.459	ENSMAUG00000016788	Gar1	94	45.946	Mesocricetus_auratus
YHR089C	-	73	54.622	MGP_CAROLIEiJ_G0025627	Gar1	94	45.946	Mus_caroli
YHR089C	-	71	53.719	ENSMUSG00000028010	Gar1	94	45.946	Mus_musculus
YHR089C	-	75	48.000	MGP_PahariEiJ_G0027076	Gar1	94	51.240	Mus_pahari
YHR089C	-	71	53.719	MGP_SPRETEiJ_G0026580	Gar1	94	45.946	Mus_spretus
YHR089C	-	91	45.570	ENSMLUG00000003776	GAR1	54	52.846	Myotis_lucifugus
YHR089C	-	84	47.651	ENSNLEG00000016578	GAR1	56	52.846	Nomascus_leucogenys
YHR089C	-	95	48.503	ENSODEG00000011083	GAR1	64	51.587	Octodon_degus
YHR089C	-	78	48.092	ENSPTRG00000016364	GAR1	61	52.846	Pan_troglodytes
YHR089C	-	55	44.828	ENSPTRG00000049340	-	57	45.902	Pan_troglodytes
YHR089C	-	93	49.383	ENSPEMG00000015838	Gar1	94	45.946	Peromyscus_maniculatus_bairdii
YHR089C	-	91	45.283	ENSPVAG00000005992	GAR1	51	52.846	Pteropus_vampyrus
YHR089C	-	78	48.092	ENSRBIG00000019547	GAR1	61	52.846	Rhinopithecus_bieti
YHR089C	-	78	48.092	ENSRROG00000028454	GAR1	61	52.846	Rhinopithecus_roxellana
YHR089C	-	79	53.571	ENSSPUG00000008707	GAR1	70	52.381	Sphenodon_punctatus
YHR089C	-	84	48.649	ENSVVUG00000017612	GAR1	62	52.846	Vulpes_vulpes