EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YHR121W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 564
Position: chrVIII:352756-353319
Accession: S000001163
RBP type: canonical RBP
Summary: Protein of unknown function that may function in RNA processing%3B interacts with Pbp1p and Pbp4p and associates with ribosomes%3B contains an RNA-binding LSM domain and an AD domain%3B GFP-fusion protein is induced by the DNA-damaging agent MMS%3B relative distribution to the nucleus increases upon DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YHR121W_mRNA	AD	PF09793.9	6.7e-25	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YHR121W_mRNA	-	564	-	YHR121W_mRNA	187 (aa)	-	P38828

Gene Model

Click here to download YHR121W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YHR121W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YHR121W	-	61	33.051	ENSANAG00000029011	LSM12	77	33.051	Aotus_nancymaae
YHR121W	-	61	33.051	ENSCJAG00000048480	LSM12	77	33.051	Callithrix_jacchus
YHR121W	-	82	30.573	ENSCAPG00000009647	LSM12	78	30.573	Cavia_aperea
YHR121W	-	61	33.898	ENSCPOG00000012860	LSM12	77	33.898	Cavia_porcellus
YHR121W	-	61	33.051	ENSCCAG00000032905	LSM12	77	33.051	Cebus_capucinus
YHR121W	-	61	33.051	ENSCATG00000030577	-	77	33.051	Cercocebus_atys
YHR121W	-	61	33.051	ENSCLAG00000015759	LSM12	77	33.051	Chinchilla_lanigera
YHR121W	-	61	33.051	ENSCANG00000043328	LSM12	77	33.051	Colobus_angolensis_palliatus
YHR121W	-	61	33.051	ENSCGRG00001002094	Lsm12	77	33.051	Cricetulus_griseus_chok1gshd
YHR121W	-	68	32.061	ENSCGRG00000004316	Lsm12	67	32.061	Cricetulus_griseus_crigri
YHR121W	-	61	33.051	ENSDORG00000016381	Lsm12	77	33.051	Dipodomys_ordii
YHR121W	-	80	30.128	ENSETEG00000011012	-	81	30.128	Echinops_telfairi
YHR121W	-	61	33.051	ENSECAG00000009071	LSM12	77	33.051	Equus_caballus
YHR121W	-	68	32.061	ENSEEUG00000002419	-	77	32.061	Erinaceus_europaeus
YHR121W	-	68	32.061	ENSFDAG00000008954	LSM12	69	32.061	Fukomys_damarensis
YHR121W	-	68	31.298	ENSGMOG00000015449	lsm12b	75	31.298	Gadus_morhua
YHR121W	-	65	31.746	ENSGALG00000039803	LSM12	74	31.746	Gallus_gallus
YHR121W	-	68	32.061	ENSGACG00000003428	lsm12b	75	32.061	Gasterosteus_aculeatus
YHR121W	-	61	33.051	ENSGGOG00000010589	-	77	33.051	Gorilla_gorilla
YHR121W	-	68	32.061	ENSHBUG00000007667	lsm12b	52	32.061	Haplochromis_burtoni
YHR121W	-	61	33.051	ENSHGLG00000011411	LSM12	77	33.051	Heterocephalus_glaber_female
YHR121W	-	68	32.061	ENSHGLG00100000241	LSM12	63	32.061	Heterocephalus_glaber_male
YHR121W	-	61	33.051	ENSSTOG00000007403	LSM12	77	33.051	Ictidomys_tridecemlineatus
YHR121W	-	61	33.051	ENSJJAG00000004364	-	77	33.051	Jaculus_jaculus
YHR121W	-	61	33.051	ENSMFAG00000031376	LSM12	77	33.051	Macaca_fascicularis
YHR121W	-	61	33.051	ENSMMUG00000006804	LSM12	77	33.051	Macaca_mulatta
YHR121W	-	61	33.051	ENSMNEG00000030594	-	77	33.051	Macaca_nemestrina
YHR121W	-	61	33.051	ENSMLEG00000039934	LSM12	77	33.051	Mandrillus_leucophaeus
YHR121W	-	61	33.051	ENSMICG00000037219	LSM12	77	33.051	Microcebus_murinus
YHR121W	-	61	33.051	ENSMOCG00000019878	-	77	33.051	Microtus_ochrogaster
YHR121W	-	61	33.051	MGP_CAROLIEiJ_G0017241	Lsm12	77	33.051	Mus_caroli
YHR121W	-	61	33.051	ENSMUSG00000020922	Lsm12	77	33.051	Mus_musculus
YHR121W	-	61	33.051	MGP_PahariEiJ_G0018371	Lsm12	77	33.051	Mus_pahari
YHR121W	-	61	33.051	MGP_SPRETEiJ_G0018084	Lsm12	77	33.051	Mus_spretus
YHR121W	-	67	32.800	ENSNGAG00000015429	-	63	32.800	Nannospalax_galili
YHR121W	-	61	33.051	ENSNGAG00000001870	Lsm12	77	33.051	Nannospalax_galili
YHR121W	-	61	33.051	ENSNLEG00000005580	-	77	33.051	Nomascus_leucogenys
YHR121W	-	61	33.051	ENSODEG00000017998	-	77	33.051	Octodon_degus
YHR121W	-	68	32.061	ENSOARG00000006589	LSM12	59	32.061	Ovis_aries
YHR121W	-	68	32.061	ENSPPAG00000034974	-	61	36.735	Pan_paniscus
YHR121W	-	68	32.061	ENSPTIG00000012704	-	63	32.061	Panthera_tigris_altaica
YHR121W	-	61	32.479	ENSPTIG00000014850	-	77	32.479	Panthera_tigris_altaica
YHR121W	-	61	33.051	ENSPTRG00000009261	LSM12	77	33.051	Pan_troglodytes
YHR121W	-	61	33.051	ENSPANG00000021315	-	77	33.051	Papio_anubis
YHR121W	-	61	33.051	ENSPEMG00000012199	Lsm12	77	33.051	Peromyscus_maniculatus_bairdii
YHR121W	-	61	33.051	ENSPCOG00000027951	LSM12	77	33.051	Propithecus_coquereli
YHR121W	-	61	33.051	ENSRBIG00000027910	LSM12	77	33.051	Rhinopithecus_bieti
YHR121W	-	61	33.051	ENSRROG00000045530	-	77	33.051	Rhinopithecus_roxellana
YHR121W	-	61	33.051	ENSSBOG00000025310	LSM12	77	33.051	Saimiri_boliviensis_boliviensis
YHR121W	-	68	32.824	ENSSHAG00000014914	LSM12	75	32.824	Sarcophilus_harrisii
YHR121W	-	68	32.061	ENSSARG00000005537	LSM12	77	32.061	Sorex_araneus
YHR121W	-	68	32.061	ENSUAMG00000006313	LSM12	73	32.061	Ursus_americanus
YHR121W	-	68	32.061	ENSUMAG00000012987	LSM12	67	32.061	Ursus_maritimus