EuRBPDB

Description

Ensembl ID: YHR141C (Gene tree)
Gene ID: -
Gene Symbol: RPL42B
Alias: MAK18
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 762
Position: chrVIII:381990-382751
Accession: S000001183
RBP type: canonical RBP
Summary: Ribosomal 60S subunit protein L42B%3B required for propagation of the killer toxin-encoding M1 double-stranded RNA satellite of the L-A double-stranded RNA virus%3B homologous to mammalian ribosomal protein L36A%2C no bacterial homolog%3B RPL42B has a paralog%2C RPL42A%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YHR141C_mRNA	Ribosomal_L44	PF00935.19	3.8e-36	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YHR141C_mRNA	-	321	-	YHR141C_mRNA	106 (aa)	-	P0CX27

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YHR141C	RPL42B	100	100.000	YNL162W	RPL42A	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YHR141C	RPL42B	100	73.148	ENSAPOG00000013433	-	100	73.148	Acanthochromis_polyacanthus
YHR141C	RPL42B	100	75.472	WBGene00004454	rpl-36.A	100	75.472	Caenorhabditis_elegans
YHR141C	RPL42B	58	77.049	ENSCHOG00000010261	-	95	77.586	Choloepus_hoffmanni
YHR141C	RPL42B	100	77.358	ENSCING00000014452	-	100	77.358	Ciona_intestinalis
YHR141C	RPL42B	100	78.302	ENSCSAVG00000007282	-	100	78.302	Ciona_savignyi
YHR141C	RPL42B	100	74.074	ENSCSEG00000002856	-	100	74.074	Cynoglossus_semilaevis
YHR141C	RPL42B	100	69.811	FBgn0031980	RpL36A	100	69.811	Drosophila_melanogaster
YHR141C	RPL42B	99	74.766	ENSEBUG00000008606	-	56	74.766	Eptatretus_burgeri
YHR141C	RPL42B	100	72.222	ENSELUG00000000608	-	99	70.707	Esox_lucius
YHR141C	RPL42B	100	73.148	ENSELUG00000011650	-	74	73.148	Esox_lucius
YHR141C	RPL42B	99	58.879	ENSMODG00000025578	-	78	58.879	Monodelphis_domestica
YHR141C	RPL42B	86	72.043	ENSMALG00000005415	-	94	72.043	Monopterus_albus
YHR141C	RPL42B	58	77.049	ENSOPRG00000007961	-	95	77.586	Ochotona_princeps
YHR141C	RPL42B	60	76.562	ENSPKIG00000021146	-	75	79.310	Paramormyrops_kingsleyae
YHR141C	RPL42B	58	77.049	ENSPCAG00000003271	-	95	77.586	Procavia_capensis
YHR141C	RPL42B	99	61.682	ENSSHAG00000013479	-	62	61.682	Sarcophilus_harrisii
YHR141C	RPL42B	97	66.990	ENSSLDG00000003666	-	97	67.647	Seriola_lalandi_dorsalis
YHR141C	RPL42B	93	74.257	ENSTRUG00000012092	-	69	71.429	Takifugu_rubripes