EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YHR170W (Gene tree)
Gene ID: -
Gene Symbol: NMD3
Alias: SRC5
Full Name: Protein involved in nuclear export of the large ribosomal subunit%3B acts as a Crm1p-dependent adapter protein for export of nascent ribosomal subunits through the nuclear pore complex
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1557 bases
Position: chrVIII:443828-445384
Accession: S000001213
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YHR170W_mRNA	NMD3	PF04981.13	6.4e-83	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YHR170W_mRNA	-	1557	-	YHR170W_mRNA	518 (aa)	-	P38861

Gene Model

Click here to download YHR170W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YHR170W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YHR170W	NMD3	95	44.071	ENSG00000169251	NMD3	95	51.675	Homo_sapiens
YHR170W	NMD3	94	44.668	ENSAPOG00000022912	nmd3	94	44.668	Acanthochromis_polyacanthus
YHR170W	NMD3	95	44.181	ENSAMEG00000001584	NMD3	96	43.393	Ailuropoda_melanoleuca
YHR170W	NMD3	94	41.851	ENSACIG00000015196	nmd3	94	41.247	Amphilophus_citrinellus
YHR170W	NMD3	94	44.467	ENSAOCG00000009086	nmd3	94	44.266	Amphiprion_ocellaris
YHR170W	NMD3	94	44.467	ENSAPEG00000000329	nmd3	94	44.266	Amphiprion_percula
YHR170W	NMD3	94	43.863	ENSATEG00000014351	nmd3	94	43.461	Anabas_testudineus
YHR170W	NMD3	97	44.118	ENSAPLG00000014786	NMD3	97	43.922	Anas_platyrhynchos
YHR170W	NMD3	94	44.266	ENSACAG00000007349	NMD3	94	44.064	Anolis_carolinensis
YHR170W	NMD3	97	43.860	ENSANAG00000026434	NMD3	98	43.945	Aotus_nancymaae
YHR170W	NMD3	94	43.260	ENSACLG00000015520	nmd3	94	43.058	Astatotilapia_calliptera
YHR170W	NMD3	94	44.668	ENSAMXG00000014415	nmd3	94	44.467	Astyanax_mexicanus
YHR170W	NMD3	97	42.857	ENSBTAG00000016228	NMD3	97	42.857	Bos_taurus
YHR170W	NMD3	93	41.129	WBGene00012030	T25G3.3	94	41.129	Caenorhabditis_elegans
YHR170W	NMD3	95	44.112	ENSCJAG00000002900	NMD3	94	43.912	Callithrix_jacchus
YHR170W	NMD3	93	45.051	ENSCAFG00000014352	NMD3	92	44.848	Canis_familiaris
YHR170W	NMD3	95	44.466	ENSCAFG00020021145	NMD3	96	44.269	Canis_lupus_dingo
YHR170W	NMD3	97	42.661	ENSCHIG00000016015	NMD3	97	42.466	Capra_hircus
YHR170W	NMD3	96	44.423	ENSTSYG00000002155	NMD3	97	44.031	Carlito_syrichta
YHR170W	NMD3	74	46.582	ENSCAPG00000017861	NMD3	92	46.582	Cavia_aperea
YHR170W	NMD3	79	47.031	ENSCPOG00000005953	NMD3	90	47.031	Cavia_porcellus
YHR170W	NMD3	96	43.555	ENSCCAG00000037460	NMD3	97	43.359	Cebus_capucinus
YHR170W	NMD3	95	43.676	ENSCATG00000030022	NMD3	96	43.478	Cercocebus_atys
YHR170W	NMD3	95	44.269	ENSCLAG00000003155	NMD3	96	44.071	Chinchilla_lanigera
YHR170W	NMD3	95	43.676	ENSCSAG00000012333	NMD3	96	43.478	Chlorocebus_sabaeus
YHR170W	NMD3	74	38.062	ENSCHOG00000001240	NMD3	77	37.736	Choloepus_hoffmanni
YHR170W	NMD3	97	45.614	ENSCPBG00000018318	NMD3	96	46.444	Chrysemys_picta_bellii
YHR170W	NMD3	96	41.602	ENSCING00000002129	-	97	41.406	Ciona_intestinalis
YHR170W	NMD3	88	40.851	ENSCSAVG00000001120	-	98	40.638	Ciona_savignyi
YHR170W	NMD3	93	41.296	ENSCANG00000042939	NMD3	89	41.093	Colobus_angolensis_palliatus
YHR170W	NMD3	88	38.925	ENSCGRG00001001792	Nmd3	95	38.445	Cricetulus_griseus_chok1gshd
YHR170W	NMD3	95	43.898	ENSCGRG00000007947	Nmd3	98	43.701	Cricetulus_griseus_crigri
YHR170W	NMD3	96	42.436	ENSCSEG00000017954	nmd3	97	42.043	Cynoglossus_semilaevis
YHR170W	NMD3	96	39.961	ENSCVAG00000004672	nmd3	97	40.157	Cyprinodon_variegatus
YHR170W	NMD3	97	43.444	ENSDARG00000015676	nmd3	97	43.444	Danio_rerio
YHR170W	NMD3	95	42.885	ENSDNOG00000045222	NMD3	96	42.688	Dasypus_novemcinctus
YHR170W	NMD3	93	40.771	ENSDORG00000005716	Nmd3	94	40.568	Dipodomys_ordii
YHR170W	NMD3	96	45.155	FBgn0023542	Nmd3	95	44.961	Drosophila_melanogaster
YHR170W	NMD3	96	37.109	ENSETEG00000003168	NMD3	97	36.914	Echinops_telfairi
YHR170W	NMD3	87	42.333	ENSEBUG00000014316	nmd3	95	43.844	Eptatretus_burgeri
YHR170W	NMD3	96	43.444	ENSEASG00005018672	NMD3	96	43.676	Equus_asinus_asinus
YHR170W	NMD3	94	43.800	ENSECAG00000000188	NMD3	94	43.600	Equus_caballus
YHR170W	NMD3	93	34.146	ENSEEUG00000010642	-	100	33.943	Erinaceus_europaeus
YHR170W	NMD3	94	44.467	ENSELUG00000024123	nmd3	94	43.863	Esox_lucius
YHR170W	NMD3	96	44.204	ENSFCAG00000022867	NMD3	96	44.071	Felis_catus
YHR170W	NMD3	90	46.025	ENSFALG00000008711	NMD3	96	45.397	Ficedula_albicollis
YHR170W	NMD3	95	36.200	ENSFDAG00000012197	-	95	36.000	Fukomys_damarensis
YHR170W	NMD3	93	44.242	ENSFDAG00000013724	-	94	44.040	Fukomys_damarensis
YHR170W	NMD3	96	44.094	ENSFHEG00000000415	nmd3	94	44.266	Fundulus_heteroclitus
YHR170W	NMD3	95	45.618	ENSGMOG00000009675	nmd3	98	45.219	Gadus_morhua
YHR170W	NMD3	97	44.250	ENSGALG00000009533	NMD3	97	44.055	Gallus_gallus
YHR170W	NMD3	96	43.615	ENSGAFG00000012798	nmd3	92	43.222	Gambusia_affinis
YHR170W	NMD3	94	43.863	ENSGACG00000010028	nmd3	94	43.662	Gasterosteus_aculeatus
YHR170W	NMD3	97	45.224	ENSGAGG00000006556	NMD3	97	45.029	Gopherus_agassizii
YHR170W	NMD3	94	35.944	ENSGGOG00000028590	-	90	34.746	Gorilla_gorilla
YHR170W	NMD3	95	44.071	ENSGGOG00000007157	NMD3	96	43.874	Gorilla_gorilla
YHR170W	NMD3	94	43.260	ENSHBUG00000001781	nmd3	94	43.058	Haplochromis_burtoni
YHR170W	NMD3	93	44.242	ENSHGLG00000014451	-	94	44.040	Heterocephalus_glaber_female
YHR170W	NMD3	95	38.337	ENSHGLG00000010477	-	94	38.134	Heterocephalus_glaber_female
YHR170W	NMD3	93	44.242	ENSHGLG00100006613	-	94	44.040	Heterocephalus_glaber_male
YHR170W	NMD3	95	38.337	ENSHGLG00100001042	-	94	38.134	Heterocephalus_glaber_male
YHR170W	NMD3	94	44.356	ENSHCOG00000004292	nmd3	89	44.158	Hippocampus_comes
YHR170W	NMD3	94	44.064	ENSIPUG00000005073	nmd3	89	45.376	Ictalurus_punctatus
YHR170W	NMD3	95	43.478	ENSSTOG00000001899	NMD3	96	43.281	Ictidomys_tridecemlineatus
YHR170W	NMD3	95	43.762	ENSJJAG00000019759	Nmd3	99	43.564	Jaculus_jaculus
YHR170W	NMD3	96	43.701	ENSKMAG00000020427	nmd3	96	43.787	Kryptolebias_marmoratus
YHR170W	NMD3	94	43.863	ENSLBEG00000022216	nmd3	94	43.662	Labrus_bergylta
YHR170W	NMD3	94	43.058	ENSLACG00000005731	NMD3	97	46.636	Latimeria_chalumnae
YHR170W	NMD3	94	43.662	ENSLOCG00000003561	nmd3	94	43.260	Lepisosteus_oculatus
YHR170W	NMD3	95	43.787	ENSLAFG00000007231	NMD3	96	43.590	Loxodonta_africana
YHR170W	NMD3	95	43.676	ENSMFAG00000040934	NMD3	96	43.478	Macaca_fascicularis
YHR170W	NMD3	93	44.040	ENSMMUG00000009564	NMD3	94	39.557	Macaca_mulatta
YHR170W	NMD3	95	43.676	ENSMNEG00000034626	NMD3	96	43.478	Macaca_nemestrina
YHR170W	NMD3	84	43.304	ENSMLEG00000002741	NMD3	96	43.527	Mandrillus_leucophaeus
YHR170W	NMD3	94	44.064	ENSMAMG00000012427	nmd3	94	43.662	Mastacembelus_armatus
YHR170W	NMD3	94	43.260	ENSMZEG00005016888	nmd3	94	43.058	Maylandia_zebra
YHR170W	NMD3	97	44.250	ENSMGAG00000010498	NMD3	97	44.055	Meleagris_gallopavo
YHR170W	NMD3	96	42.661	ENSMAUG00000000633	Nmd3	96	42.688	Mesocricetus_auratus
YHR170W	NMD3	96	44.008	ENSMICG00000049196	NMD3	97	43.811	Microcebus_murinus
YHR170W	NMD3	96	42.661	ENSMOCG00000005180	Nmd3	97	42.717	Microtus_ochrogaster
YHR170W	NMD3	94	42.570	ENSMMOG00000012765	nmd3	94	42.369	Mola_mola
YHR170W	NMD3	94	39.960	ENSMODG00000016296	NMD3	95	39.600	Monodelphis_domestica
YHR170W	NMD3	94	43.260	ENSMALG00000009256	nmd3	94	43.058	Monopterus_albus
YHR170W	NMD3	95	43.281	MGP_CAROLIEiJ_G0025069	Nmd3	96	43.083	Mus_caroli
YHR170W	NMD3	95	43.281	ENSMUSG00000027787	Nmd3	96	43.083	Mus_musculus
YHR170W	NMD3	98	42.146	MGP_PahariEiJ_G0026512	Nmd3	99	41.954	Mus_pahari
YHR170W	NMD3	95	43.281	MGP_SPRETEiJ_G0026011	Nmd3	96	43.083	Mus_spretus
YHR170W	NMD3	95	44.071	ENSMPUG00000002955	NMD3	96	43.874	Mustela_putorius_furo
YHR170W	NMD3	95	41.339	ENSMLUG00000000701	NMD3	96	41.142	Myotis_lucifugus
YHR170W	NMD3	96	43.026	ENSNGAG00000012307	Nmd3	97	42.633	Nannospalax_galili
YHR170W	NMD3	95	43.564	ENSNBRG00000003324	nmd3	96	43.366	Neolamprologus_brichardi
YHR170W	NMD3	95	44.269	ENSNLEG00000004655	NMD3	96	44.071	Nomascus_leucogenys
YHR170W	NMD3	69	41.228	ENSOPRG00000007690	-	70	41.228	Ochotona_princeps
YHR170W	NMD3	93	44.737	ENSODEG00000006270	NMD3	96	44.534	Octodon_degus
YHR170W	NMD3	94	43.662	ENSONIG00000003643	nmd3	94	43.461	Oreochromis_niloticus
YHR170W	NMD3	97	43.750	ENSOCUG00000017454	NMD3	98	43.555	Oryctolagus_cuniculus
YHR170W	NMD3	94	43.461	ENSORLG00000006279	nmd3	94	43.662	Oryzias_latipes
YHR170W	NMD3	94	43.260	ENSORLG00020003843	nmd3	94	43.260	Oryzias_latipes_hni
YHR170W	NMD3	94	43.058	ENSORLG00015006379	nmd3	94	43.260	Oryzias_latipes_hsok
YHR170W	NMD3	94	44.266	ENSOMEG00000012144	nmd3	94	44.064	Oryzias_melastigma
YHR170W	NMD3	93	44.242	ENSOGAG00000014910	NMD3	94	44.040	Otolemur_garnettii
YHR170W	NMD3	97	42.578	ENSOARG00000001883	NMD3	95	42.383	Ovis_aries
YHR170W	NMD3	95	44.071	ENSPPAG00000043829	NMD3	96	43.874	Pan_paniscus
YHR170W	NMD3	93	44.444	ENSPPRG00000000724	NMD3	93	44.242	Panthera_pardus
YHR170W	NMD3	95	44.094	ENSPTIG00000016761	NMD3	96	43.898	Panthera_tigris_altaica
YHR170W	NMD3	95	44.071	ENSPTRG00000015586	NMD3	96	44.071	Pan_troglodytes
YHR170W	NMD3	93	44.040	ENSPANG00000006665	NMD3	89	43.838	Papio_anubis
YHR170W	NMD3	97	42.105	ENSPKIG00000009928	nmd3	97	42.105	Paramormyrops_kingsleyae
YHR170W	NMD3	97	44.639	ENSPSIG00000007591	NMD3	97	44.444	Pelodiscus_sinensis
YHR170W	NMD3	93	40.891	ENSPMGG00000014015	nmd3	94	40.688	Periophthalmus_magnuspinnatus
YHR170W	NMD3	95	43.564	ENSPEMG00000021880	Nmd3	97	43.366	Peromyscus_maniculatus_bairdii
YHR170W	NMD3	94	45.090	ENSPCIG00000020869	NMD3	98	45.610	Phascolarctos_cinereus
YHR170W	NMD3	94	44.467	ENSPFOG00000012103	nmd3	94	44.266	Poecilia_formosa
YHR170W	NMD3	94	44.467	ENSPLAG00000008087	nmd3	94	44.266	Poecilia_latipinna
YHR170W	NMD3	94	44.467	ENSPMEG00000008506	nmd3	94	44.266	Poecilia_mexicana
YHR170W	NMD3	94	44.266	ENSPREG00000001848	nmd3	94	44.064	Poecilia_reticulata
YHR170W	NMD3	95	44.269	ENSPPYG00000014263	NMD3	96	44.071	Pongo_abelii
YHR170W	NMD3	87	38.829	ENSPCAG00000009851	NMD3	97	38.829	Procavia_capensis
YHR170W	NMD3	73	56.604	ENSPVAG00000003301	NMD3	79	56.604	Pteropus_vampyrus
YHR170W	NMD3	94	43.260	ENSPNYG00000006778	nmd3	94	43.058	Pundamilia_nyererei
YHR170W	NMD3	94	43.863	ENSPNAG00000009442	nmd3	94	43.058	Pygocentrus_nattereri
YHR170W	NMD3	96	42.466	ENSRNOG00000009310	Nmd3	97	42.270	Rattus_norvegicus
YHR170W	NMD3	95	40.711	ENSRBIG00000040379	NMD3	96	40.514	Rhinopithecus_bieti
YHR170W	NMD3	95	43.874	ENSRROG00000036181	NMD3	96	43.676	Rhinopithecus_roxellana
YHR170W	NMD3	96	43.898	ENSSBOG00000024021	NMD3	96	43.960	Saimiri_boliviensis_boliviensis
YHR170W	NMD3	94	41.551	ENSSHAG00000016044	NMD3	94	41.153	Sarcophilus_harrisii
YHR170W	NMD3	94	43.461	ENSSFOG00015003609	nmd3	94	43.058	Scleropages_formosus
YHR170W	NMD3	94	43.260	ENSSMAG00000012887	nmd3	94	42.656	Scophthalmus_maximus
YHR170W	NMD3	94	43.863	ENSSDUG00000023721	nmd3	94	43.461	Seriola_dumerili
YHR170W	NMD3	94	44.266	ENSSLDG00000006565	nmd3	94	43.863	Seriola_lalandi_dorsalis
YHR170W	NMD3	95	44.356	ENSSARG00000010402	NMD3	99	44.158	Sorex_araneus
YHR170W	NMD3	97	45.029	ENSSPUG00000018791	NMD3	98	44.444	Sphenodon_punctatus
YHR170W	NMD3	94	44.668	ENSSPAG00000014328	nmd3	94	44.467	Stegastes_partitus
YHR170W	NMD3	95	43.676	ENSSSCG00000022952	NMD3	96	43.281	Sus_scrofa
YHR170W	NMD3	88	45.182	ENSTGUG00000015141	-	97	44.968	Taeniopygia_guttata
YHR170W	NMD3	97	45.205	ENSTGUG00000011140	-	97	45.010	Taeniopygia_guttata
YHR170W	NMD3	95	42.772	ENSTRUG00000005958	nmd3	96	42.376	Takifugu_rubripes
YHR170W	NMD3	95	30.693	ENSTBEG00000011783	-	96	30.495	Tupaia_belangeri
YHR170W	NMD3	98	38.889	ENSTTRG00000012938	NMD3	99	38.697	Tursiops_truncatus
YHR170W	NMD3	73	47.179	ENSUAMG00000009305	-	96	47.179	Ursus_americanus
YHR170W	NMD3	96	44.685	ENSUMAG00000011070	NMD3	95	44.444	Ursus_maritimus
YHR170W	NMD3	95	43.874	ENSVPAG00000008779	NMD3	90	45.203	Vicugna_pacos
YHR170W	NMD3	95	44.269	ENSVVUG00000023055	NMD3	96	44.071	Vulpes_vulpes
YHR170W	NMD3	94	46.076	ENSXETG00000027727	nmd3	94	45.272	Xenopus_tropicalis
YHR170W	NMD3	58	49.206	ENSXCOG00000012490	nmd3	82	51.899	Xiphophorus_couchianus
YHR170W	NMD3	94	44.467	ENSXMAG00000018406	nmd3	94	44.266	Xiphophorus_maculatus