EuRBPDB

Description

Ensembl ID: YIL079C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1083
Position: chrIX:210923-212005
Accession: S000001341
RBP type: canonical RBP
Summary: Zinc knuckle protein%3B involved in nuclear RNA processing and degradation as a component of the TRAMP complex%3B stimulates the poly(A) polymerase activity of Pap2p in vitro%3B AIR1 has a paralog%2C AIR2%2C that arose from the whole genome duplication%3B although Air1p and Air2p are homologous TRAMP subunits%2C they have nonredundant roles in regulation of substrate specificity of the exosome

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YIL079C_mRNA	zf-CCHC	PF00098.23	2.5e-09	1	3
YIL079C_mRNA	zf-CCHC	PF00098.23	2.5e-09	2	3
YIL079C_mRNA	zf-CCHC	PF00098.23	2.5e-09	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YIL079C_mRNA	-	1083	-	YIL079C_mRNA	360 (aa)	-	P40507

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YIL079C	-	86	49.530	YDL175C	-	87	49.530