EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
YIL133C (Gene tree)
Gene ID
-
Gene Symbol
RPL16A
Alias
RPL13
Full Name
-
Gene Type
protein_coding
Species
Saccharomyces_cerevisiae
Status
confidence
Strand
Minus strand
Length
890
Position
chrIX:98527-99416
Accession
S000001395
RBP type
canonical RBP
Summary
Ribosomal 60S subunit protein L16A%3B N-terminally acetylated%2C binds 5.8 S rRNA%3B transcriptionally regulated by Rap1p%3B homologous to mammalian ribosomal protein L13A and bacterial L13%3B RPL16A has a paralog%2C RPL16B%2C that arose from the whole genome duplication%3B protein abundance increases in response to DNA replication stress
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
YIL133C_mRNARibosomal_L13PF00572.187.8e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
26632259The RNA-binding proteomes from yeast to man harbour conserved enigmRBPsRIC.PAR_CL & yeast2015 Dec 3Beckmann BMDOI: 10.1038/ncomms10127
25173706Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteinsRNPxl & yeast2014 Aug 31Kramer KDOI: 10.1038/nmeth.3092
26595419Conserved mRNA-binding proteomes in eukaryotic organismsmRBPome & yeast2015 Nov 23Matia Gonzalez AMDOI: 10.1038/nsmb.3128
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
YIL133C_mRNA-600-YIL133C_mRNA199 (aa)-P26784
Gene Model
Click here to download YIL133C's gene model file
Protein-Protein Interaction (PPI)

Clik here to download YIL133C's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
YIL133CRPL16A9890.306YNL069CRPL16B9990.306
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
YIL133CRPL16A8861.932ENSG00000142541RPL13A8761.932Homo_sapiens
YIL133CRPL16A9658.883ENSAPOG00000014084rpl13a9658.883Acanthochromis_polyacanthus
YIL133CRPL16A8861.932ENSAMEG00000014027RPL13A8761.932Ailuropoda_melanoleuca
YIL133CRPL16A9460.428ENSACIG00000004871rpl13a9360.428Amphilophus_citrinellus
YIL133CRPL16A9658.376ENSAOCG00000002123rpl13a9658.376Amphiprion_ocellaris
YIL133CRPL16A9658.376ENSAPEG00000018777rpl13a9658.376Amphiprion_percula
YIL133CRPL16A9657.868ENSATEG00000012828rpl13a9658.883Anabas_testudineus
YIL133CRPL16A9959.406ENSACAG00000017279RPL13A9959.406Anolis_carolinensis
YIL133CRPL16A5662.500ENSANAG00000013769-7962.500Aotus_nancymaae
YIL133CRPL16A8854.237ENSANAG00000020868-8654.237Aotus_nancymaae
YIL133CRPL16A8555.882ENSANAG00000021423-8658.462Aotus_nancymaae
YIL133CRPL16A8861.932ENSANAG00000030530RPL13A8761.932Aotus_nancymaae
YIL133CRPL16A5555.963ENSANAG00000037443-7755.963Aotus_nancymaae
YIL133CRPL16A9459.358ENSACLG00000016552rpl13a9159.358Astatotilapia_calliptera
YIL133CRPL16A8860.795ENSAMXG00000033532rpl13a8660.795Astyanax_mexicanus
YIL133CRPL16A8862.500ENSBTAG00000005296RPL13A8762.500Bos_taurus
YIL133CRPL16A9752.308WBGene00004428rpl-169652.308Caenorhabditis_elegans
YIL133CRPL16A8861.932ENSCJAG00000000072-8761.932Callithrix_jacchus
YIL133CRPL16A7163.830ENSCJAG00000008837-8063.830Callithrix_jacchus
YIL133CRPL16A9458.289ENSCJAG00000046649-9258.289Callithrix_jacchus
YIL133CRPL16A8860.227ENSCJAG00000040678-8760.227Callithrix_jacchus
YIL133CRPL16A8861.932ENSCAFG00000029892RPL13A8761.932Canis_familiaris
YIL133CRPL16A7844.872ENSCAFG00000003946-7844.872Canis_familiaris
YIL133CRPL16A8763.006ENSCAFG00020024917-8761.932Canis_lupus_dingo
YIL133CRPL16A8862.500ENSCHIG00000021732-8663.743Capra_hircus
YIL133CRPL16A8860.795ENSCHIG00000012581-8660.795Capra_hircus
YIL133CRPL16A8747.399ENSTSYG00000028115-8447.399Carlito_syrichta
YIL133CRPL16A8862.500ENSTSYG00000008791-8762.500Carlito_syrichta
YIL133CRPL16A8663.158ENSCAPG00000007267RPL13A8666.667Cavia_aperea
YIL133CRPL16A8861.932ENSCPOG00000012417RPL13A8666.667Cavia_porcellus
YIL133CRPL16A6365.600ENSCPOG00000023083-5765.116Cavia_porcellus
YIL133CRPL16A6767.910ENSCCAG00000029220-9267.910Cebus_capucinus
YIL133CRPL16A7062.590ENSCCAG00000020555-10062.590Cebus_capucinus
YIL133CRPL16A7862.581ENSCCAG00000034479-7866.142Cebus_capucinus
YIL133CRPL16A8861.932ENSCCAG00000022898RPL13A8761.932Cebus_capucinus
YIL133CRPL16A8861.932ENSCATG00000011576RPL13A8761.932Cercocebus_atys
YIL133CRPL16A9857.436ENSCLAG00000012323RPL13A8665.789Chinchilla_lanigera
YIL133CRPL16A8860.795ENSCSAG00000019054-8760.795Chlorocebus_sabaeus
YIL133CRPL16A9658.376ENSCPBG00000014922RPL13A9259.391Chrysemys_picta_bellii
YIL133CRPL16A9757.949ENSCING00000014892-9557.949Ciona_intestinalis
YIL133CRPL16A9757.436ENSCSAVG00000000666-9557.436Ciona_savignyi
YIL133CRPL16A8861.932ENSCANG00000040885-8761.932Colobus_angolensis_palliatus
YIL133CRPL16A8861.364ENSCANG00000000304-8761.364Colobus_angolensis_palliatus
YIL133CRPL16A7853.165ENSCANG00000018732-9653.165Colobus_angolensis_palliatus
YIL133CRPL16A9857.949ENSCGRG00001018651-9457.949Cricetulus_griseus_chok1gshd
YIL133CRPL16A9857.949ENSCGRG00000005890-8666.667Cricetulus_griseus_crigri
YIL133CRPL16A9651.269ENSCSEG00000002640rpl13a9652.284Cynoglossus_semilaevis
YIL133CRPL16A9651.269ENSCVAG00000011043rpl13a9651.269Cyprinodon_variegatus
YIL133CRPL16A9657.868ENSDARG00000044093rpl13a9657.868Danio_rerio
YIL133CRPL16A8862.500ENSDNOG00000035370-8762.500Dasypus_novemcinctus
YIL133CRPL16A8863.068ENSDORG00000012194-8269.725Dipodomys_ordii
YIL133CRPL16A9757.436FBgn0037351RpL13A9557.436Drosophila_melanogaster
YIL133CRPL16A6767.910ENSETEG00000017076-6667.910Echinops_telfairi
YIL133CRPL16A8660.819ENSETEG00000005732-8460.819Echinops_telfairi
YIL133CRPL16A9855.838ENSEBUG00000007234rpl13a9856.216Eptatretus_burgeri
YIL133CRPL16A8663.743ENSEASG00005005007RPL13A7463.743Equus_asinus_asinus
YIL133CRPL16A8862.500ENSECAG00000015832RPL13A8663.743Equus_caballus
YIL133CRPL16A6659.398ENSEEUG00000014071RPL13A6659.398Erinaceus_europaeus
YIL133CRPL16A9658.247ENSELUG00000014577rpl13a9358.247Esox_lucius
YIL133CRPL16A8861.932ENSFCAG00000009194RPL13A8761.932Felis_catus
YIL133CRPL16A9857.949ENSFDAG00000016892RPL13A8666.667Fukomys_damarensis
YIL133CRPL16A9557.368ENSFHEG00000004165rpl13a9656.853Fundulus_heteroclitus
YIL133CRPL16A9458.824ENSGMOG00000010791rpl13a9257.868Gadus_morhua
YIL133CRPL16A9658.376ENSGAFG00000007578rpl13a9658.376Gambusia_affinis
YIL133CRPL16A9657.868ENSGACG00000009310rpl13a9857.868Gasterosteus_aculeatus
YIL133CRPL16A7859.873ENSGAGG00000002437RPL13A7455.497Gopherus_agassizii
YIL133CRPL16A6763.433ENSGGOG00000039250-8163.433Gorilla_gorilla
YIL133CRPL16A8861.932ENSGGOG00000002932RPL13A8761.932Gorilla_gorilla
YIL133CRPL16A6864.706ENSGGOG00000039904-7066.412Gorilla_gorilla
YIL133CRPL16A8861.364ENSGGOG00000023324-8761.364Gorilla_gorilla
YIL133CRPL16A9459.358ENSHBUG00000023575rpl13a9159.358Haplochromis_burtoni
YIL133CRPL16A9857.949ENSHGLG00000010070RPL13A8666.667Heterocephalus_glaber_female
YIL133CRPL16A9857.949ENSHGLG00100010359RPL13A8666.667Heterocephalus_glaber_male
YIL133CRPL16A9658.883ENSHCOG00000007902rpl13a9958.883Hippocampus_comes
YIL133CRPL16A9657.868ENSIPUG00000014098rpl13a9357.868Ictalurus_punctatus
YIL133CRPL16A8663.158ENSSTOG00000021558RPL13A8666.667Ictidomys_tridecemlineatus
YIL133CRPL16A8862.500ENSJJAG00000000343-8667.544Jaculus_jaculus
YIL133CRPL16A9657.868ENSKMAG00000009039rpl13a9657.868Kryptolebias_marmoratus
YIL133CRPL16A9658.376ENSLBEG00000005434rpl13a9658.376Labrus_bergylta
YIL133CRPL16A9458.201ENSLACG00000019092RPL13A9058.639Latimeria_chalumnae
YIL133CRPL16A9658.854ENSLOCG00000004388rpl13a9358.854Lepisosteus_oculatus
YIL133CRPL16A8861.932ENSLAFG00000016213RPL13A8761.932Loxodonta_africana
YIL133CRPL16A8861.932ENSMFAG00000001097-8761.932Macaca_fascicularis
YIL133CRPL16A8859.116ENSMFAG00000002765-8759.116Macaca_fascicularis
YIL133CRPL16A7859.615ENSMFAG00000003121-8260.248Macaca_fascicularis
YIL133CRPL16A8861.932ENSMMUG00000007551RPL13A8761.932Macaca_mulatta
YIL133CRPL16A8859.116ENSMMUG00000009018-8759.116Macaca_mulatta
YIL133CRPL16A8861.932ENSMNEG00000034977RPL13A8761.932Macaca_nemestrina
YIL133CRPL16A5966.949ENSMLEG00000038132-10066.949Mandrillus_leucophaeus
YIL133CRPL16A9657.868ENSMAMG00000007425rpl13a8358.883Mastacembelus_armatus
YIL133CRPL16A9459.358ENSMZEG00005004952rpl13a9159.358Maylandia_zebra
YIL133CRPL16A9858.462ENSMAUG00000016402-8666.667Mesocricetus_auratus
YIL133CRPL16A8363.253ENSMAUG00000020351-8263.253Mesocricetus_auratus
YIL133CRPL16A8357.229ENSMAUG00000012558-8557.229Mesocricetus_auratus
YIL133CRPL16A7854.194ENSMICG00000043457-8354.194Microcebus_murinus
YIL133CRPL16A8861.932ENSMICG00000009318-8761.932Microcebus_murinus
YIL133CRPL16A9857.949ENSMOCG00000002774-8666.667Microtus_ochrogaster
YIL133CRPL16A8854.545ENSMOCG00000016427-9254.545Microtus_ochrogaster
YIL133CRPL16A9958.416ENSMMOG00000010248rpl13a9958.416Mola_mola
YIL133CRPL16A9657.868ENSMALG00000012804rpl13a9657.868Monopterus_albus
YIL133CRPL16A9857.436MGP_CAROLIEiJ_G0029698-9457.436Mus_caroli
YIL133CRPL16A9857.949ENSMUSG00000074129Rpl13a8769.767Mus_musculus
YIL133CRPL16A9857.436MGP_PahariEiJ_G0012923-9457.436Mus_pahari
YIL133CRPL16A9855.385MGP_SPRETEiJ_G0017763-9455.385Mus_spretus
YIL133CRPL16A9857.949MGP_SPRETEiJ_G0030796Rpl13a9457.949Mus_spretus
YIL133CRPL16A8861.932ENSMPUG00000002604RPL13A8761.932Mustela_putorius_furo
YIL133CRPL16A8861.364ENSMLUG00000004945RPL13A8761.364Myotis_lucifugus
YIL133CRPL16A9858.462ENSNGAG00000021984-9359.474Nannospalax_galili
YIL133CRPL16A9659.162ENSNBRG00000024166rpl13a9159.358Neolamprologus_brichardi
YIL133CRPL16A8657.895ENSNLEG00000012957-8257.895Nomascus_leucogenys
YIL133CRPL16A8854.749ENSNLEG00000005211RPL13A8654.749Nomascus_leucogenys
YIL133CRPL16A8560.588ENSNLEG00000033213-8560.588Nomascus_leucogenys
YIL133CRPL16A6954.348ENSMEUG00000005199RPL13A9850.000Notamacropus_eugenii
YIL133CRPL16A8857.386ENSOPRG00000001194RPL13A8757.386Ochotona_princeps
YIL133CRPL16A9856.923ENSODEG00000019218-9456.923Octodon_degus
YIL133CRPL16A9857.949ENSODEG00000016831-8666.667Octodon_degus
YIL133CRPL16A9857.949ENSODEG00000020468-9457.949Octodon_degus
YIL133CRPL16A8860.795ENSODEG00000020233-8760.795Octodon_degus
YIL133CRPL16A9459.358ENSONIG00000003560rpl13a9159.358Oreochromis_niloticus
YIL133CRPL16A9958.376ENSOANG00000000828RPL13A9758.376Ornithorhynchus_anatinus
YIL133CRPL16A8156.522ENSOCUG00000026592-10056.522Oryctolagus_cuniculus
YIL133CRPL16A9658.883ENSORLG00000014599rpl13a8658.883Oryzias_latipes
YIL133CRPL16A9658.883ENSORLG00020013090rpl13a8658.883Oryzias_latipes_hni
YIL133CRPL16A9658.883ENSORLG00015011634rpl13a9658.883Oryzias_latipes_hsok
YIL133CRPL16A9657.360ENSOMEG00000010232rpl13a8658.376Oryzias_melastigma
YIL133CRPL16A8860.452ENSOGAG00000030280-8760.452Otolemur_garnettii
YIL133CRPL16A8858.523ENSOGAG00000026177-8758.523Otolemur_garnettii
YIL133CRPL16A8862.500ENSOGAG00000004625-8762.500Otolemur_garnettii
YIL133CRPL16A8862.500ENSOARG00000020159-8762.500Ovis_aries
YIL133CRPL16A8649.708ENSOARG00000017798-8449.708Ovis_aries
YIL133CRPL16A8663.743ENSOARG00000013169-8463.743Ovis_aries
YIL133CRPL16A8857.955ENSPPAG00000019107-8757.955Pan_paniscus
YIL133CRPL16A8662.209ENSPPAG00000023659-8562.209Pan_paniscus
YIL133CRPL16A6864.706ENSPPAG00000006023-6966.412Pan_paniscus
YIL133CRPL16A8861.932ENSPPAG00000037365RPL13A8761.932Pan_paniscus
YIL133CRPL16A8861.932ENSPPRG00000011265RPL13A8761.932Panthera_pardus
YIL133CRPL16A6569.231ENSPTRG00000052284-8969.231Pan_troglodytes
YIL133CRPL16A8861.364ENSPTRG00000050666-8761.364Pan_troglodytes
YIL133CRPL16A5663.393ENSPTRG00000042978-7963.393Pan_troglodytes
YIL133CRPL16A8857.955ENSPTRG00000049426-8757.955Pan_troglodytes
YIL133CRPL16A8861.932ENSPTRG00000011298RPL13A8761.932Pan_troglodytes
YIL133CRPL16A8861.932ENSPANG00000012050RPL13A8761.932Papio_anubis
YIL133CRPL16A9660.914ENSPKIG00000000720rpl13a9660.914Paramormyrops_kingsleyae
YIL133CRPL16A8265.031ENSPSIG00000018234RPL13A9659.375Pelodiscus_sinensis
YIL133CRPL16A8064.375ENSPMGG00000010552rpl13a9159.162Periophthalmus_magnuspinnatus
YIL133CRPL16A9857.949ENSPEMG00000009221-8666.667Peromyscus_maniculatus_bairdii
YIL133CRPL16A9759.585ENSPMAG00000006362rpl13a9259.585Petromyzon_marinus
YIL133CRPL16A8464.286ENSPCIG00000007340-8763.636Phascolarctos_cinereus
YIL133CRPL16A7848.718ENSPCIG00000014063-8348.718Phascolarctos_cinereus
YIL133CRPL16A9658.376ENSPFOG00000013546rpl13a9658.376Poecilia_formosa
YIL133CRPL16A9658.376ENSPLAG00000016066rpl13a9658.376Poecilia_latipinna
YIL133CRPL16A9658.376ENSPMEG00000018384rpl13a9658.376Poecilia_mexicana
YIL133CRPL16A9658.376ENSPREG00000020079rpl13a9658.376Poecilia_reticulata
YIL133CRPL16A8861.932ENSPPYG00000010251-8761.932Pongo_abelii
YIL133CRPL16A8861.932ENSPPYG00000006798-8761.932Pongo_abelii
YIL133CRPL16A8861.932ENSPCAG00000004086RPL13A8761.932Procavia_capensis
YIL133CRPL16A8861.932ENSPCOG00000023898RPL13A8761.932Propithecus_coquereli
YIL133CRPL16A9446.032ENSPCOG00000016293-9246.032Propithecus_coquereli
YIL133CRPL16A8861.932ENSPVAG00000010958RPL13A8761.932Pteropus_vampyrus
YIL133CRPL16A9459.358ENSPNYG00000019779rpl13a9159.358Pundamilia_nyererei
YIL133CRPL16A9658.883ENSPNAG00000026887rpl13a9658.883Pygocentrus_nattereri
YIL133CRPL16A9857.949ENSRNOG00000062298Rpl13a9457.949Rattus_norvegicus
YIL133CRPL16A8861.932ENSRBIG00000044737RPL13A8761.932Rhinopithecus_bieti
YIL133CRPL16A8857.386ENSRROG00000036041-8657.386Rhinopithecus_roxellana
YIL133CRPL16A6665.152ENSRROG00000028369-8654.386Rhinopithecus_roxellana
YIL133CRPL16A8861.932ENSRROG00000042976-8761.932Rhinopithecus_roxellana
YIL133CRPL16A8851.064ENSSBOG00000024635-8751.064Saimiri_boliviensis_boliviensis
YIL133CRPL16A8861.364ENSSBOG00000028481RPL13A8662.573Saimiri_boliviensis_boliviensis
YIL133CRPL16A7865.385ENSSFOG00015001972rpl13a9658.376Scleropages_formosus
YIL133CRPL16A9658.376ENSSDUG00000017181rpl13a9958.376Seriola_dumerili
YIL133CRPL16A9658.376ENSSLDG00000002561rpl13a9658.376Seriola_lalandi_dorsalis
YIL133CRPL16A8363.030ENSSLDG00000007920-9659.259Seriola_lalandi_dorsalis
YIL133CRPL16A5554.955ENSSPUG00000014548RPL13A8854.955Sphenodon_punctatus
YIL133CRPL16A8762.428ENSSSCG00000034448-8562.428Sus_scrofa
YIL133CRPL16A8350.303ENSSSCG00000031204-9150.303Sus_scrofa
YIL133CRPL16A9659.391ENSTRUG00000023611rpl13a9659.391Takifugu_rubripes
YIL133CRPL16A5065.657ENSTNIG00000017285rpl13a10065.657Tetraodon_nigroviridis
YIL133CRPL16A8861.932ENSTTRG00000005485RPL13A8761.932Tursiops_truncatus
YIL133CRPL16A8861.932ENSUAMG00000008438RPL13A8761.932Ursus_americanus
YIL133CRPL16A8861.932ENSUMAG00000002385RPL13A8761.932Ursus_maritimus
YIL133CRPL16A8660.234ENSVPAG00000006564RPL13A8660.234Vicugna_pacos
YIL133CRPL16A8861.932ENSVVUG00000022597RPL13A9162.644Vulpes_vulpes
YIL133CRPL16A9858.706ENSXETG00000014144rpl13a8758.706Xenopus_tropicalis
YIL133CRPL16A9658.376ENSXCOG00000004826rpl13a9658.376Xiphophorus_couchianus
YIL133CRPL16A9658.376ENSXMAG00000027604rpl13a9658.376Xiphophorus_maculatus

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