EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YIL143C (Gene tree)
Gene ID: -
Gene Symbol: SSL2
Alias: LOM3|RAD25
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Minus strand
Length: 2532
Position: chrIX:80510-83041
Accession: S000001405
RBP type: canonical RBP
Summary: Component of RNA polymerase transcription factor TFIIH holoenzyme%3B acts as dsDNA-dependent translocase in context of TFIIH%2C unwinds DNA strands during initiation and promotes transcription start site (TSS) scanning%3B has DNA-dependent ATPase/helicase activity%3B interacts functionally with TFIIB%2C has roles in TSS selection and gene looping to juxtapose initiation and termination regions%3B involved in DNA repair%3B relocalizes to cytosol under hypoxia%3B homolog of human ERCC3

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YIL143C_mRNA	ResIII	PF04851.15	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YIL143C_mRNA	-	2532	-	YIL143C_mRNA	843 (aa)	-	Q00578

Gene Model

Click here to download YIL143C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YIL143C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YIL143C	SSL2	85	55.967	ENSG00000163161	ERCC3	98	68.553	Homo_sapiens
YIL143C	SSL2	85	54.891	ENSAPOG00000014383	ercc3	92	55.299	Acanthochromis_polyacanthus
YIL143C	SSL2	85	55.907	ENSAMEG00000016840	ERCC3	91	55.907	Ailuropoda_melanoleuca
YIL143C	SSL2	85	55.014	ENSACIG00000000126	ercc3	93	55.163	Amphilophus_citrinellus
YIL143C	SSL2	85	54.878	ENSAOCG00000009396	ercc3	92	55.299	Amphiprion_ocellaris
YIL143C	SSL2	85	55.435	ENSAPEG00000023077	ercc3	92	55.299	Amphiprion_percula
YIL143C	SSL2	85	55.061	ENSATEG00000014860	ercc3	92	55.331	Anabas_testudineus
YIL143C	SSL2	84	56.027	ENSAPLG00000012068	ERCC3	98	56.690	Anas_platyrhynchos
YIL143C	SSL2	85	56.735	ENSACAG00000009919	ERCC3	99	56.967	Anolis_carolinensis
YIL143C	SSL2	85	56.104	ENSANAG00000031091	ERCC3	91	56.516	Aotus_nancymaae
YIL143C	SSL2	85	56.174	ENSACLG00000022508	ercc3	92	56.174	Astatotilapia_calliptera
YIL143C	SSL2	85	55.962	ENSAMXG00000036947	ercc3	99	53.266	Astyanax_mexicanus
YIL143C	SSL2	85	55.738	ENSBTAG00000020777	ERCC3	99	53.275	Bos_taurus
YIL143C	SSL2	85	53.360	WBGene00013441	xpb-1	91	53.441	Caenorhabditis_elegans
YIL143C	SSL2	85	55.951	ENSCJAG00000010416	ERCC3	91	56.379	Callithrix_jacchus
YIL143C	SSL2	85	56.088	ENSCAFG00000004497	ERCC3	92	55.907	Canis_familiaris
YIL143C	SSL2	85	56.088	ENSCAFG00020003495	ERCC3	92	55.907	Canis_lupus_dingo
YIL143C	SSL2	85	56.088	ENSCHIG00000014551	ERCC3	99	53.418	Capra_hircus
YIL143C	SSL2	85	55.874	ENSTSYG00000004137	ERCC3	92	55.874	Carlito_syrichta
YIL143C	SSL2	82	45.084	ENSCAPG00000017027	ERCC3	99	45.084	Cavia_aperea
YIL143C	SSL2	85	54.607	ENSCPOG00000002144	ERCC3	92	54.743	Cavia_porcellus
YIL143C	SSL2	85	55.967	ENSCCAG00000024421	ERCC3	91	56.379	Cebus_capucinus
YIL143C	SSL2	85	56.653	ENSCATG00000032313	ERCC3	91	56.809	Cercocebus_atys
YIL143C	SSL2	85	55.830	ENSCLAG00000002965	ERCC3	88	55.601	Chinchilla_lanigera
YIL143C	SSL2	85	55.967	ENSCSAG00000016827	ERCC3	91	56.379	Chlorocebus_sabaeus
YIL143C	SSL2	60	61.047	ENSCHOG00000007414	ERCC3	66	61.047	Choloepus_hoffmanni
YIL143C	SSL2	85	56.986	ENSCPBG00000013638	ERCC3	99	57.123	Chrysemys_picta_bellii
YIL143C	SSL2	86	55.020	ENSCING00000002867	ercc3	92	54.752	Ciona_intestinalis
YIL143C	SSL2	85	56.593	ENSCANG00000007094	ERCC3	91	56.809	Colobus_angolensis_palliatus
YIL143C	SSL2	85	56.044	ENSCGRG00001009426	Ercc3	91	56.790	Cricetulus_griseus_chok1gshd
YIL143C	SSL2	82	55.791	ENSCGRG00000015547	Ercc3	91	56.417	Cricetulus_griseus_crigri
YIL143C	SSL2	85	55.389	ENSCSEG00000016479	ercc3	91	55.374	Cynoglossus_semilaevis
YIL143C	SSL2	85	56.344	ENSCVAG00000015177	ercc3	92	56.480	Cyprinodon_variegatus
YIL143C	SSL2	85	56.038	ENSDARG00000002402	ercc3	92	56.054	Danio_rerio
YIL143C	SSL2	53	58.980	ENSDNOG00000035027	ERCC3	94	58.980	Dasypus_novemcinctus
YIL143C	SSL2	85	56.088	ENSDORG00000004671	Ercc3	92	55.601	Dipodomys_ordii
YIL143C	SSL2	91	51.601	FBgn0001179	hay	99	51.656	Drosophila_melanogaster
YIL143C	SSL2	74	54.773	ENSETEG00000019887	ERCC3	79	54.717	Echinops_telfairi
YIL143C	SSL2	85	55.331	ENSEBUG00000009773	ercc3	92	55.210	Eptatretus_burgeri
YIL143C	SSL2	85	55.951	ENSEASG00005022466	ERCC3	89	55.769	Equus_asinus_asinus
YIL143C	SSL2	85	55.951	ENSECAG00000006589	ERCC3	91	55.907	Equus_caballus
YIL143C	SSL2	77	58.507	ENSEEUG00000001057	ERCC3	91	57.761	Erinaceus_europaeus
YIL143C	SSL2	85	55.662	ENSELUG00000000089	ercc3	91	55.525	Esox_lucius
YIL143C	SSL2	85	55.738	ENSFCAG00000006989	ERCC3	91	55.738	Felis_catus
YIL143C	SSL2	84	56.432	ENSFALG00000003936	ERCC3	99	53.125	Ficedula_albicollis
YIL143C	SSL2	85	55.983	ENSFDAG00000011924	ERCC3	91	56.319	Fukomys_damarensis
YIL143C	SSL2	85	55.616	ENSFHEG00000005185	ercc3	92	55.616	Fundulus_heteroclitus
YIL143C	SSL2	85	55.014	ENSGMOG00000018032	ercc3	99	52.453	Gadus_morhua
YIL143C	SSL2	85	56.653	ENSGALG00000011515	ERCC3	99	54.419	Gallus_gallus
YIL143C	SSL2	85	55.299	ENSGAFG00000011936	ercc3	92	55.978	Gambusia_affinis
YIL143C	SSL2	85	56.000	ENSGACG00000015218	ercc3	99	56.000	Gasterosteus_aculeatus
YIL143C	SSL2	85	57.162	ENSGAGG00000018579	ERCC3	99	57.260	Gopherus_agassizii
YIL143C	SSL2	85	55.967	ENSGGOG00000015255	ERCC3	91	56.379	Gorilla_gorilla
YIL143C	SSL2	85	56.174	ENSHBUG00000003818	ercc3	92	56.174	Haplochromis_burtoni
YIL143C	SSL2	85	56.181	ENSHGLG00000011014	ERCC3	91	56.241	Heterocephalus_glaber_female
YIL143C	SSL2	85	56.181	ENSHGLG00100013806	ERCC3	91	56.241	Heterocephalus_glaber_male
YIL143C	SSL2	85	55.782	ENSHCOG00000016924	ercc3	92	56.054	Hippocampus_comes
YIL143C	SSL2	85	55.767	ENSIPUG00000021000	ercc3	92	55.767	Ictalurus_punctatus
YIL143C	SSL2	85	55.951	ENSSTOG00000011001	ERCC3	91	55.907	Ictidomys_tridecemlineatus
YIL143C	SSL2	83	53.900	ENSJJAG00000001117	Ercc3	99	53.900	Jaculus_jaculus
YIL143C	SSL2	85	56.114	ENSKMAG00000021764	ercc3	99	53.317	Kryptolebias_marmoratus
YIL143C	SSL2	85	54.681	ENSLBEG00000000468	ercc3	92	54.681	Labrus_bergylta
YIL143C	SSL2	85	51.752	ENSLACG00000014815	ERCC3	92	52.086	Latimeria_chalumnae
YIL143C	SSL2	80	54.035	ENSLOCG00000010907	ercc3	84	54.035	Lepisosteus_oculatus
YIL143C	SSL2	85	56.181	ENSLAFG00000014866	ERCC3	99	53.043	Loxodonta_africana
YIL143C	SSL2	85	56.653	ENSMFAG00000003370	ERCC3	91	56.809	Macaca_fascicularis
YIL143C	SSL2	85	53.460	ENSMNEG00000004215	ERCC3	91	53.867	Macaca_nemestrina
YIL143C	SSL2	85	56.653	ENSMLEG00000042061	ERCC3	91	56.809	Mandrillus_leucophaeus
YIL143C	SSL2	85	56.267	ENSMAMG00000004505	ercc3	91	56.267	Mastacembelus_armatus
YIL143C	SSL2	85	56.174	ENSMZEG00005004854	ercc3	92	56.174	Maylandia_zebra
YIL143C	SSL2	83	57.022	ENSMGAG00000011706	ERCC3	99	57.063	Meleagris_gallopavo
YIL143C	SSL2	85	56.044	ENSMAUG00000004515	Ercc3	91	56.653	Mesocricetus_auratus
YIL143C	SSL2	85	55.328	ENSMICG00000009578	ERCC3	91	55.464	Microcebus_murinus
YIL143C	SSL2	85	56.224	ENSMOCG00000021767	Ercc3	91	56.044	Microtus_ochrogaster
YIL143C	SSL2	88	54.557	ENSMMOG00000018174	ercc3	97	54.345	Mola_mola
YIL143C	SSL2	85	56.753	ENSMODG00000018695	ERCC3	91	56.849	Monodelphis_domestica
YIL143C	SSL2	85	55.586	ENSMALG00000014944	ercc3	92	55.285	Monopterus_albus
YIL143C	SSL2	85	56.498	MGP_CAROLIEiJ_G0022075	Ercc3	91	56.071	Mus_caroli
YIL143C	SSL2	85	56.224	ENSMUSG00000024382	Ercc3	91	55.798	Mus_musculus
YIL143C	SSL2	85	56.498	MGP_PahariEiJ_G0018809	Ercc3	91	55.935	Mus_pahari
YIL143C	SSL2	85	56.224	MGP_SPRETEiJ_G0022987	Ercc3	91	55.798	Mus_spretus
YIL143C	SSL2	85	55.951	ENSMPUG00000012021	ERCC3	91	55.907	Mustela_putorius_furo
YIL143C	SSL2	85	54.668	ENSMLUG00000007429	ERCC3	99	54.484	Myotis_lucifugus
YIL143C	SSL2	83	56.006	ENSNGAG00000019598	Ercc3	90	58.358	Nannospalax_galili
YIL143C	SSL2	85	56.174	ENSNBRG00000019074	ercc3	92	56.174	Neolamprologus_brichardi
YIL143C	SSL2	85	54.458	ENSNLEG00000015665	ERCC3	96	54.733	Nomascus_leucogenys
YIL143C	SSL2	85	54.993	ENSOPRG00000004553	ERCC3	91	54.570	Ochotona_princeps
YIL143C	SSL2	85	55.435	ENSODEG00000005795	ERCC3	92	55.571	Octodon_degus
YIL143C	SSL2	85	56.038	ENSONIG00000003255	ercc3	92	56.038	Oreochromis_niloticus
YIL143C	SSL2	85	56.224	ENSOCUG00000002248	ERCC3	91	56.181	Oryctolagus_cuniculus
YIL143C	SSL2	85	55.798	ENSORLG00000004393	ercc3	92	55.738	Oryzias_latipes
YIL143C	SSL2	85	55.798	ENSORLG00020017718	ercc3	91	55.738	Oryzias_latipes_hni
YIL143C	SSL2	85	55.525	ENSORLG00015015695	ercc3	92	55.464	Oryzias_latipes_hsok
YIL143C	SSL2	85	55.691	ENSOMEG00000015374	ercc3	92	55.196	Oryzias_melastigma
YIL143C	SSL2	85	56.207	ENSOGAG00000009103	ERCC3	91	56.164	Otolemur_garnettii
YIL143C	SSL2	85	56.088	ENSOARG00000016147	ERCC3	99	53.291	Ovis_aries
YIL143C	SSL2	85	55.967	ENSPPAG00000036166	ERCC3	91	56.379	Pan_paniscus
YIL143C	SSL2	85	55.738	ENSPPRG00000001305	ERCC3	91	55.738	Panthera_pardus
YIL143C	SSL2	85	55.738	ENSPTIG00000016969	ERCC3	99	55.738	Panthera_tigris_altaica
YIL143C	SSL2	85	55.967	ENSPTRG00000046940	ERCC3	91	56.379	Pan_troglodytes
YIL143C	SSL2	85	56.593	ENSPANG00000007699	ERCC3	91	56.809	Papio_anubis
YIL143C	SSL2	85	55.645	ENSPKIG00000001319	ercc3	95	56.463	Paramormyrops_kingsleyae
YIL143C	SSL2	85	56.753	ENSPSIG00000014682	ERCC3	99	56.849	Pelodiscus_sinensis
YIL143C	SSL2	85	55.296	ENSPMGG00000017885	ercc3	91	55.296	Periophthalmus_magnuspinnatus
YIL143C	SSL2	85	55.951	ENSPEMG00000013733	Ercc3	91	55.907	Peromyscus_maniculatus_bairdii
YIL143C	SSL2	83	53.434	ENSPMAG00000005081	ercc3	99	53.232	Petromyzon_marinus
YIL143C	SSL2	85	56.344	ENSPCIG00000011821	ERCC3	92	56.438	Phascolarctos_cinereus
YIL143C	SSL2	85	55.094	ENSPFOG00000015604	ercc3	92	56.098	Poecilia_formosa
YIL143C	SSL2	85	55.242	ENSPLAG00000022245	ercc3	99	56.250	Poecilia_latipinna
YIL143C	SSL2	85	55.094	ENSPMEG00000016987	ercc3	92	56.098	Poecilia_mexicana
YIL143C	SSL2	85	54.826	ENSPREG00000020921	ercc3	92	55.827	Poecilia_reticulata
YIL143C	SSL2	85	55.616	ENSPPYG00000012769	ERCC3	91	56.027	Pongo_abelii
YIL143C	SSL2	85	55.464	ENSPCOG00000024903	ERCC3	91	55.601	Propithecus_coquereli
YIL143C	SSL2	75	57.197	ENSPVAG00000013774	ERCC3	81	57.576	Pteropus_vampyrus
YIL143C	SSL2	85	56.174	ENSPNYG00000001208	ercc3	92	56.174	Pundamilia_nyererei
YIL143C	SSL2	85	56.088	ENSPNAG00000005748	ercc3	92	56.344	Pygocentrus_nattereri
YIL143C	SSL2	85	56.456	ENSRNOG00000013180	Ercc3	91	55.874	Rattus_norvegicus
YIL143C	SSL2	85	56.593	ENSRBIG00000027692	ERCC3	91	56.809	Rhinopithecus_bieti
YIL143C	SSL2	85	56.593	ENSRROG00000040673	ERCC3	91	56.809	Rhinopithecus_roxellana
YIL143C	SSL2	85	55.464	ENSSBOG00000023079	ERCC3	91	55.601	Saimiri_boliviensis_boliviensis
YIL143C	SSL2	85	56.617	ENSSHAG00000007423	ERCC3	91	56.712	Sarcophilus_harrisii
YIL143C	SSL2	85	56.114	ENSSFOG00015012753	ercc3	91	55.978	Scleropages_formosus
YIL143C	SSL2	85	54.743	ENSSMAG00000011915	ercc3	99	52.030	Scophthalmus_maximus
YIL143C	SSL2	85	55.224	ENSSDUG00000021181	ercc3	92	55.088	Seriola_dumerili
YIL143C	SSL2	85	55.224	ENSSLDG00000008744	ercc3	89	55.224	Seriola_lalandi_dorsalis
YIL143C	SSL2	83	54.785	ENSSPUG00000015183	ERCC3	91	55.524	Sphenodon_punctatus
YIL143C	SSL2	85	55.285	ENSSPAG00000004748	ercc3	92	55.571	Stegastes_partitus
YIL143C	SSL2	85	56.425	ENSSSCG00000015721	ERCC3	91	56.425	Sus_scrofa
YIL143C	SSL2	85	56.908	ENSTGUG00000004920	-	92	57.143	Taeniopygia_guttata
YIL143C	SSL2	85	55.480	ENSTRUG00000017185	ercc3	99	52.889	Takifugu_rubripes
YIL143C	SSL2	85	53.857	ENSTNIG00000005457	ercc3	94	53.992	Tetraodon_nigroviridis
YIL143C	SSL2	74	54.016	ENSTBEG00000009381	ERCC3	80	54.173	Tupaia_belangeri
YIL143C	SSL2	62	60.305	ENSUAMG00000009589	-	97	60.496	Ursus_americanus
YIL143C	SSL2	85	55.601	ENSUMAG00000008361	ERCC3	91	55.601	Ursus_maritimus
YIL143C	SSL2	85	56.224	ENSVVUG00000010431	ERCC3	99	56.044	Vulpes_vulpes
YIL143C	SSL2	85	55.842	ENSXETG00000033646	ercc3	91	56.164	Xenopus_tropicalis
YIL143C	SSL2	85	55.978	ENSXCOG00000001791	ercc3	93	55.978	Xiphophorus_couchianus
YIL143C	SSL2	85	55.435	ENSXMAG00000003641	ercc3	94	58.555	Xiphophorus_maculatus