EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YIR009W (Gene tree)
Gene ID: -
Gene Symbol: MSL1
Alias: YIB9
Full Name: U2B component of U2 snRNP%3B involved in splicing%2C binds the U2 snRNA stem-loop IV in vitro but requires association of Lea1p for in vivo binding%3B does not contain the conserved C-terminal RNA binding domain found in other family members
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Plus strand
Length: 336 bases
Position: chrIX:374525-374860
Accession: S000001448
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YIR009W_mRNA	RRM_5	PF13893.6	1.2e-10	1	1
YIR009W_mRNA	RRM_1	PF00076.22	1.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YIR009W_mRNA	-	336	-	YIR009W_mRNA	111 (aa)	-	P40567

Gene Model

Click here to download YIR009W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YIR009W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YIR009W	MSL1	84	31.915	ENSG00000077312	SNRPA	100	34.483	Homo_sapiens
YIR009W	MSL1	65	34.247	ENSAPOG00000015161	snrpb2	76	34.247	Acanthochromis_polyacanthus
YIR009W	MSL1	65	34.247	ENSAPOG00000014688	-	76	34.247	Acanthochromis_polyacanthus
YIR009W	MSL1	77	33.721	ENSCJAG00000045570	-	92	33.721	Callithrix_jacchus
YIR009W	MSL1	85	31.579	ENSCAFG00000031370	-	58	31.579	Canis_familiaris
YIR009W	MSL1	77	33.721	ENSCAFG00020017913	-	90	33.721	Canis_lupus_dingo
YIR009W	MSL1	73	35.366	ENSCAFG00020024265	-	67	35.366	Canis_lupus_dingo
YIR009W	MSL1	72	30.864	ENSCAFG00020011358	-	92	30.864	Canis_lupus_dingo
YIR009W	MSL1	84	31.915	ENSCAFG00020014898	SNRPA	89	34.483	Canis_lupus_dingo
YIR009W	MSL1	84	31.915	ENSCATG00000032716	SNRPA	91	34.483	Cercocebus_atys
YIR009W	MSL1	84	31.915	ENSCANG00000038637	SNRPA	84	35.366	Colobus_angolensis_palliatus
YIR009W	MSL1	84	31.915	ENSMFAG00000041710	SNRPA	91	34.483	Macaca_fascicularis
YIR009W	MSL1	84	31.915	ENSMMUG00000022024	SNRPA	86	35.366	Macaca_mulatta
YIR009W	MSL1	87	32.653	ENSMLEG00000039593	SNRPA	91	34.483	Mandrillus_leucophaeus
YIR009W	MSL1	76	31.765	MGP_CAROLIEiJ_G0024372	Snrpb2	57	32.927	Mus_caroli
YIR009W	MSL1	76	31.765	ENSMUSG00000008333	Snrpb2	57	32.927	Mus_musculus
YIR009W	MSL1	76	31.765	MGP_PahariEiJ_G0025817	Snrpb2	59	31.765	Mus_pahari
YIR009W	MSL1	76	31.765	MGP_SPRETEiJ_G0025291	Snrpb2	57	32.927	Mus_spretus
YIR009W	MSL1	73	35.366	ENSODEG00000000626	-	83	35.366	Octodon_degus
YIR009W	MSL1	84	31.915	ENSPANG00000023874	SNRPA	91	34.483	Papio_anubis
YIR009W	MSL1	85	31.579	ENSPCOG00000025196	SNRPA	82	35.366	Propithecus_coquereli
YIR009W	MSL1	84	31.915	ENSRBIG00000008335	SNRPA	84	35.366	Rhinopithecus_bieti
YIR009W	MSL1	84	31.915	ENSRROG00000042727	SNRPA	84	35.366	Rhinopithecus_roxellana
YIR009W	MSL1	84	31.915	ENSSBOG00000034722	SNRPA	63	34.483	Saimiri_boliviensis_boliviensis
YIR009W	MSL1	73	35.366	ENSUAMG00000003002	-	89	35.366	Ursus_americanus
YIR009W	MSL1	84	31.915	ENSVVUG00000005647	SNRPA	89	34.483	Vulpes_vulpes
YIR009W	MSL1	73	34.146	ENSVVUG00000014183	-	73	34.146	Vulpes_vulpes
YIR009W	MSL1	68	36.364	ENSXCOG00000012134	-	82	36.364	Xiphophorus_couchianus