EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YJL033W (Gene tree)
Gene ID: -
Gene Symbol: HCA4
Alias: DBP4|ECM24
Full Name: DEAD box RNA helicase%3B component of the SSU%3B interacts with Bfr2p and Enp2p%3B high-copy number suppression of a U14 snoRNA processing mutant suggests an involvement in 18S rRNA synthesis
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 2313 bases
Position: chrX:383837-386149
Accession: S000003570
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YJL033W_mRNA	ResIII	PF04851.15	3.3e-08	1	1
YJL033W_mRNA	DEAD	PF00270.29	3.5e-48	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YJL033W_mRNA	-	2313	-	YJL033W_mRNA	770 (aa)	-	P20448

Gene Model

Click here to download YJL033W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YJL033W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YJL033W	HCA4	58	40.708	YMR290C	-	88	40.708
YJL033W	HCA4	56	31.360	YFL002C	-	74	31.360
YJL033W	HCA4	51	32.494	YNL112W	-	65	33.060
YJL033W	HCA4	51	32.471	YHR169W	-	88	32.921
YJL033W	HCA4	53	30.714	YGL171W	-	71	30.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YJL033W	HCA4	58	53.675	ENSG00000178105	DDX10	86	46.231	Homo_sapiens
YJL033W	HCA4	64	49.287	ENSAPOG00000009242	ddx10	75	42.615	Acanthochromis_polyacanthus
YJL033W	HCA4	58	53.452	ENSAMEG00000009232	DDX10	67	53.452	Ailuropoda_melanoleuca
YJL033W	HCA4	62	51.261	ENSACIG00000012927	ddx10	67	46.459	Amphilophus_citrinellus
YJL033W	HCA4	64	49.287	ENSAOCG00000021917	ddx10	75	42.638	Amphiprion_ocellaris
YJL033W	HCA4	64	49.287	ENSAPEG00000022230	ddx10	75	42.462	Amphiprion_percula
YJL033W	HCA4	63	50.103	ENSATEG00000007227	ddx10	57	50.103	Anabas_testudineus
YJL033W	HCA4	58	53.007	ENSAPLG00000011942	DDX10	60	53.007	Anas_platyrhynchos
YJL033W	HCA4	62	50.820	ENSACAG00000005173	DDX10	82	44.588	Anolis_carolinensis
YJL033W	HCA4	58	53.675	ENSANAG00000020864	DDX10	81	45.470	Aotus_nancymaae
YJL033W	HCA4	62	51.261	ENSACLG00000003559	ddx10	67	46.287	Astatotilapia_calliptera
YJL033W	HCA4	63	50.511	ENSAMXG00000006135	ddx10	58	50.205	Astyanax_mexicanus
YJL033W	HCA4	58	53.675	ENSBTAG00000002382	DDX10	56	50.905	Bos_taurus
YJL033W	HCA4	62	45.607	WBGene00021277	Y23H5B.6	66	45.102	Caenorhabditis_elegans
YJL033W	HCA4	58	53.898	ENSCJAG00000010281	DDX10	55	51.329	Callithrix_jacchus
YJL033W	HCA4	58	53.007	ENSCAFG00000014324	DDX10	56	50.101	Canis_familiaris
YJL033W	HCA4	58	53.007	ENSCAFG00020007058	DDX10	56	50.101	Canis_lupus_dingo
YJL033W	HCA4	58	53.452	ENSCHIG00000015147	DDX10	56	50.503	Capra_hircus
YJL033W	HCA4	58	53.675	ENSTSYG00000003184	DDX10	72	44.844	Carlito_syrichta
YJL033W	HCA4	62	46.998	ENSCPOG00000000865	DDX10	53	46.998	Cavia_porcellus
YJL033W	HCA4	58	53.898	ENSCCAG00000024209	DDX10	55	51.329	Cebus_capucinus
YJL033W	HCA4	56	45.093	ENSCATG00000040297	-	59	39.817	Cercocebus_atys
YJL033W	HCA4	62	52.632	ENSCATG00000028487	DDX10	69	51.943	Cercocebus_atys
YJL033W	HCA4	58	53.898	ENSCLAG00000013463	DDX10	51	53.898	Chinchilla_lanigera
YJL033W	HCA4	52	55.025	ENSCSAG00000002948	DDX10	50	54.126	Chlorocebus_sabaeus
YJL033W	HCA4	65	49.409	ENSCPBG00000021681	DDX10	76	48.928	Chrysemys_picta_bellii
YJL033W	HCA4	61	49.788	ENSCING00000021618	-	76	42.975	Ciona_intestinalis
YJL033W	HCA4	60	49.784	ENSCSAVG00000003023	-	81	49.784	Ciona_savignyi
YJL033W	HCA4	62	52.632	ENSCANG00000027716	DDX10	67	46.293	Colobus_angolensis_palliatus
YJL033W	HCA4	58	53.898	ENSCGRG00001007099	Ddx10	75	43.275	Cricetulus_griseus_chok1gshd
YJL033W	HCA4	58	53.898	ENSCGRG00000000153	Ddx10	75	43.275	Cricetulus_griseus_crigri
YJL033W	HCA4	62	51.975	ENSCSEG00000002080	ddx10	60	51.975	Cynoglossus_semilaevis
YJL033W	HCA4	60	52.061	ENSCVAG00000000109	ddx10	77	44.497	Cyprinodon_variegatus
YJL033W	HCA4	61	52.008	ENSDARG00000061865	ddx10	56	50.407	Danio_rerio
YJL033W	HCA4	58	51.885	ENSDNOG00000012542	DDX10	67	51.885	Dasypus_novemcinctus
YJL033W	HCA4	94	39.814	FBgn0030855	CG5800	72	43.260	Drosophila_melanogaster
YJL033W	HCA4	62	48.745	ENSEBUG00000007794	ddx10	74	48.745	Eptatretus_burgeri
YJL033W	HCA4	58	53.229	ENSEASG00005010110	DDX10	56	50.302	Equus_asinus_asinus
YJL033W	HCA4	58	53.229	ENSECAG00000010355	DDX10	59	50.302	Equus_caballus
YJL033W	HCA4	58	48.330	ENSEEUG00000011164	DDX10	56	45.875	Erinaceus_europaeus
YJL033W	HCA4	51	51.020	ENSFALG00000000449	DDX10	50	50.891	Ficedula_albicollis
YJL033W	HCA4	64	51.329	ENSFHEG00000011340	ddx10	61	50.298	Fundulus_heteroclitus
YJL033W	HCA4	63	50.810	ENSGAFG00000011210	ddx10	76	44.290	Gambusia_affinis
YJL033W	HCA4	93	40.000	ENSGACG00000002948	ddx10	77	43.192	Gasterosteus_aculeatus
YJL033W	HCA4	64	49.797	ENSGAGG00000023967	DDX10	60	49.797	Gopherus_agassizii
YJL033W	HCA4	58	53.898	ENSGGOG00000000271	-	67	45.799	Gorilla_gorilla
YJL033W	HCA4	64	43.354	ENSGGOG00000043095	-	53	43.354	Gorilla_gorilla
YJL033W	HCA4	57	53.670	ENSGGOG00000043387	-	88	47.112	Gorilla_gorilla
YJL033W	HCA4	62	51.050	ENSHBUG00000012476	ddx10	67	45.848	Haplochromis_burtoni
YJL033W	HCA4	65	49.903	ENSHGLG00100003298	DDX10	72	49.903	Heterocephalus_glaber_male
YJL033W	HCA4	67	48.177	ENSHCOG00000010943	ddx10	76	43.740	Hippocampus_comes
YJL033W	HCA4	58	42.282	ENSIPUG00000012876	ddx18	75	42.282	Ictalurus_punctatus
YJL033W	HCA4	61	50.951	ENSIPUG00000024738	ddx10	68	44.623	Ictalurus_punctatus
YJL033W	HCA4	58	53.675	ENSSTOG00000005213	DDX10	71	53.440	Ictidomys_tridecemlineatus
YJL033W	HCA4	58	51.893	ENSJJAG00000014261	Ddx10	51	51.893	Jaculus_jaculus
YJL033W	HCA4	61	51.266	ENSKMAG00000001578	ddx10	66	46.479	Kryptolebias_marmoratus
YJL033W	HCA4	62	50.737	ENSLBEG00000011602	ddx10	65	46.524	Labrus_bergylta
YJL033W	HCA4	64	50.407	ENSLOCG00000002074	ddx10	64	50.407	Lepisosteus_oculatus
YJL033W	HCA4	58	53.452	ENSLAFG00000005951	DDX10	76	50.503	Loxodonta_africana
YJL033W	HCA4	56	41.435	ENSMFAG00000042969	-	59	38.182	Macaca_fascicularis
YJL033W	HCA4	62	52.632	ENSMFAG00000045808	DDX10	61	46.293	Macaca_fascicularis
YJL033W	HCA4	56	40.741	ENSMMUG00000016025	-	59	37.636	Macaca_mulatta
YJL033W	HCA4	62	52.632	ENSMMUG00000014415	DDX10	67	46.293	Macaca_mulatta
YJL033W	HCA4	62	52.632	ENSMNEG00000033513	DDX10	67	46.293	Macaca_nemestrina
YJL033W	HCA4	56	41.204	ENSMLEG00000035477	-	58	37.248	Mandrillus_leucophaeus
YJL033W	HCA4	62	52.632	ENSMLEG00000044081	DDX10	84	46.293	Mandrillus_leucophaeus
YJL033W	HCA4	63	50.101	ENSMAMG00000022111	ddx10	57	50.101	Mastacembelus_armatus
YJL033W	HCA4	62	51.261	ENSMZEG00005003586	ddx10	67	46.287	Maylandia_zebra
YJL033W	HCA4	58	52.784	ENSMGAG00000015145	DDX10	75	52.784	Meleagris_gallopavo
YJL033W	HCA4	62	52.632	ENSMICG00000035071	DDX10	69	51.710	Microcebus_murinus
YJL033W	HCA4	58	54.120	ENSMOCG00000009915	Ddx10	51	54.120	Microtus_ochrogaster
YJL033W	HCA4	63	50.830	ENSMMOG00000009042	ddx10	68	45.111	Mola_mola
YJL033W	HCA4	63	51.245	ENSMALG00000021441	ddx10	81	42.504	Monopterus_albus
YJL033W	HCA4	58	54.343	MGP_CAROLIEiJ_G0032212	Ddx10	51	54.343	Mus_caroli
YJL033W	HCA4	58	54.343	ENSMUSG00000053289	Ddx10	51	54.343	Mus_musculus
YJL033W	HCA4	92	40.689	MGP_PahariEiJ_G0015080	Ddx10	61	49.077	Mus_pahari
YJL033W	HCA4	58	54.343	MGP_SPRETEiJ_G0033352	Ddx10	51	54.343	Mus_spretus
YJL033W	HCA4	58	53.452	ENSMPUG00000005921	DDX10	56	50.704	Mustela_putorius_furo
YJL033W	HCA4	58	51.002	ENSMLUG00000001645	DDX10	73	48.290	Myotis_lucifugus
YJL033W	HCA4	58	53.675	ENSNGAG00000010526	Ddx10	51	53.675	Nannospalax_galili
YJL033W	HCA4	62	51.471	ENSNBRG00000016684	ddx10	66	46.561	Neolamprologus_brichardi
YJL033W	HCA4	58	53.898	ENSNLEG00000007242	DDX10	55	51.329	Nomascus_leucogenys
YJL033W	HCA4	58	41.648	ENSOPRG00000004266	DDX10	59	39.919	Ochotona_princeps
YJL033W	HCA4	62	51.891	ENSONIG00000007263	ddx10	51	51.789	Oreochromis_niloticus
YJL033W	HCA4	58	53.675	ENSOANG00000006243	DDX10	75	51.324	Ornithorhynchus_anatinus
YJL033W	HCA4	58	53.452	ENSOCUG00000003843	DDX10	56	50.803	Oryctolagus_cuniculus
YJL033W	HCA4	62	52.000	ENSORLG00000003073	ddx10	74	44.357	Oryzias_latipes
YJL033W	HCA4	63	51.235	ENSORLG00015002672	ddx10	75	44.550	Oryzias_latipes_hsok
YJL033W	HCA4	62	52.521	ENSOMEG00000007443	ddx10	74	45.156	Oryzias_melastigma
YJL033W	HCA4	62	52.421	ENSOGAG00000010962	DDX10	73	51.738	Otolemur_garnettii
YJL033W	HCA4	58	53.540	ENSOARG00000012714	DDX10	74	50.099	Ovis_aries
YJL033W	HCA4	58	53.898	ENSPPAG00000035222	DDX10	67	45.799	Pan_paniscus
YJL033W	HCA4	58	45.657	ENSPPAG00000032506	-	62	40.741	Pan_paniscus
YJL033W	HCA4	58	45.657	ENSPTRG00000047351	-	62	40.741	Pan_troglodytes
YJL033W	HCA4	58	53.898	ENSPTRG00000004256	DDX10	67	45.799	Pan_troglodytes
YJL033W	HCA4	62	52.632	ENSPANG00000015325	DDX10	84	46.833	Papio_anubis
YJL033W	HCA4	56	48.037	ENSPANG00000029813	-	62	41.869	Papio_anubis
YJL033W	HCA4	61	51.173	ENSPKIG00000015739	ddx10	58	51.173	Paramormyrops_kingsleyae
YJL033W	HCA4	58	52.116	ENSPSIG00000014874	DDX10	77	52.116	Pelodiscus_sinensis
YJL033W	HCA4	63	51.440	ENSPMGG00000008344	ddx10	59	51.440	Periophthalmus_magnuspinnatus
YJL033W	HCA4	58	49.889	ENSPEMG00000017492	Ddx10	51	49.889	Peromyscus_maniculatus_bairdii
YJL033W	HCA4	92	42.112	ENSPCIG00000003013	DDX10	91	52.304	Phascolarctos_cinereus
YJL033W	HCA4	63	50.710	ENSPFOG00000013021	ddx10	76	44.530	Poecilia_formosa
YJL033W	HCA4	63	50.710	ENSPLAG00000009048	ddx10	76	44.530	Poecilia_latipinna
YJL033W	HCA4	63	50.913	ENSPMEG00000004541	ddx10	76	44.513	Poecilia_mexicana
YJL033W	HCA4	63	50.710	ENSPREG00000019559	ddx10	76	44.068	Poecilia_reticulata
YJL033W	HCA4	58	53.898	ENSPPYG00000003849	DDX10	67	45.964	Pongo_abelii
YJL033W	HCA4	59	62.712	ENSPCOG00000020289	DDX10	55	45.794	Propithecus_coquereli
YJL033W	HCA4	58	46.993	ENSPVAG00000007371	DDX10	56	44.668	Pteropus_vampyrus
YJL033W	HCA4	62	51.261	ENSPNYG00000001756	ddx10	66	46.620	Pundamilia_nyererei
YJL033W	HCA4	65	49.109	ENSPNAG00000017154	ddx10	81	41.501	Pygocentrus_nattereri
YJL033W	HCA4	58	54.120	ENSRNOG00000012500	Ddx10	62	48.122	Rattus_norvegicus
YJL033W	HCA4	56	39.631	ENSRBIG00000038689	-	59	36.298	Rhinopithecus_bieti
YJL033W	HCA4	62	52.000	ENSRBIG00000040612	DDX10	84	45.470	Rhinopithecus_bieti
YJL033W	HCA4	62	52.632	ENSRROG00000031744	DDX10	67	46.293	Rhinopithecus_roxellana
YJL033W	HCA4	58	53.675	ENSSBOG00000022735	DDX10	86	45.230	Saimiri_boliviensis_boliviensis
YJL033W	HCA4	94	40.597	ENSSFOG00015007982	ddx10	55	51.368	Scleropages_formosus
YJL033W	HCA4	64	49.592	ENSSMAG00000018735	ddx10	81	41.655	Scophthalmus_maximus
YJL033W	HCA4	64	50.000	ENSSDUG00000018245	ddx10	77	42.492	Seriola_dumerili
YJL033W	HCA4	64	49.592	ENSSLDG00000012041	ddx10	77	42.447	Seriola_lalandi_dorsalis
YJL033W	HCA4	58	53.452	ENSSARG00000004103	DDX10	56	50.505	Sorex_araneus
YJL033W	HCA4	64	47.764	ENSSPUG00000017612	DDX10	59	47.764	Sphenodon_punctatus
YJL033W	HCA4	64	50.612	ENSSPAG00000015548	ddx10	79	50.612	Stegastes_partitus
YJL033W	HCA4	60	51.163	ENSTGUG00000012605	DDX10	58	51.163	Taeniopygia_guttata
YJL033W	HCA4	63	49.793	ENSTRUG00000010881	ddx10	57	49.793	Takifugu_rubripes
YJL033W	HCA4	93	42.133	ENSTNIG00000010477	ddx10	77	44.548	Tetraodon_nigroviridis
YJL033W	HCA4	58	47.884	ENSTBEG00000006321	DDX10	54	47.884	Tupaia_belangeri
YJL033W	HCA4	58	43.653	ENSTTRG00000006068	DDX10	56	41.650	Tursiops_truncatus
YJL033W	HCA4	57	53.670	ENSUAMG00000014176	DDX10	95	50.620	Ursus_americanus
YJL033W	HCA4	58	53.452	ENSUMAG00000007300	DDX10	54	53.452	Ursus_maritimus
YJL033W	HCA4	57	52.955	ENSVPAG00000010185	DDX10	54	52.955	Vicugna_pacos
YJL033W	HCA4	58	53.229	ENSVVUG00000015484	DDX10	60	50.302	Vulpes_vulpes
YJL033W	HCA4	62	51.050	ENSXETG00000014458	ddx10	83	46.114	Xenopus_tropicalis
YJL033W	HCA4	62	51.579	ENSXCOG00000003080	ddx10	77	44.515	Xiphophorus_couchianus
YJL033W	HCA4	62	51.579	ENSXMAG00000016515	ddx10	74	44.515	Xiphophorus_maculatus