EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YJL050W (Gene tree)
Gene ID: -
Gene Symbol: MTR4
Alias: DOB1
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 3222
Position: chrX:342522-345743
Accession: S000003586
RBP type: canonical RBP
Summary: ATP-dependent 3'-5' RNA helicase of the DExD/H family%3B involved in nuclear RNA processing and degradation both as a component of TRAMP complex and in TRAMP-independent processes%3B TRAMP unwinds RNA duplexes%2C with Mtr4p unwinding activity stimulated by Pap2p/Air2p but not dependent on ongoing polyadenylation%3B contains an arch domain%2C with two coiled-coil arms/stalks and a globular fist/KOW domain%2C which has RNA binding activity and is required for 5.8S rRNA processing

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YJL050W_mRNA	rRNA_proc-arch	PF13234.6	1e-83	1	1
YJL050W_mRNA	DEAD	PF00270.29	7.4e-21	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YJL050W_mRNA	-	3222	-	YJL050W_mRNA	1073 (aa)	-	P47047

Gene Model

Click here to download YJL050W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YJL050W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YJL050W	MTR4	80	38.710	YLR398C	-	60	42.930

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YJL050W	MTR4	89	55.556	ENSG00000039123	MTREX	89	55.556	Homo_sapiens
YJL050W	MTR4	89	55.683	ENSAPOG00000007814	mtrex	90	55.833	Acanthochromis_polyacanthus
YJL050W	MTR4	89	55.393	ENSAMEG00000013856	MTREX	89	55.393	Ailuropoda_melanoleuca
YJL050W	MTR4	89	55.846	ENSACIG00000015117	mtrex	94	55.950	Amphilophus_citrinellus
YJL050W	MTR4	89	55.579	ENSAOCG00000011884	mtrex	90	55.729	Amphiprion_ocellaris
YJL050W	MTR4	89	55.474	ENSAPEG00000019384	mtrex	90	55.625	Amphiprion_percula
YJL050W	MTR4	89	55.637	ENSATEG00000015117	mtrex	90	55.787	Anabas_testudineus
YJL050W	MTR4	89	54.984	ENSAPLG00000009694	MTREX	94	54.984	Anas_platyrhynchos
YJL050W	MTR4	89	56.080	ENSACAG00000015200	MTREX	86	56.080	Anolis_carolinensis
YJL050W	MTR4	89	55.451	ENSANAG00000023095	MTREX	91	55.451	Aotus_nancymaae
YJL050W	MTR4	95	52.440	ENSACLG00000001921	mtrex	91	54.822	Astatotilapia_calliptera
YJL050W	MTR4	90	53.381	ENSAMXG00000018751	mtrex	89	56.560	Astyanax_mexicanus
YJL050W	MTR4	89	55.346	ENSBTAG00000010518	MTREX	90	55.346	Bos_taurus
YJL050W	MTR4	89	46.905	WBGene00012342	mtr-4	91	47.170	Caenorhabditis_elegans
YJL050W	MTR4	89	55.451	ENSCJAG00000001773	MTREX	90	55.451	Callithrix_jacchus
YJL050W	MTR4	89	55.556	ENSCAFG00000006818	MTREX	89	55.556	Canis_familiaris
YJL050W	MTR4	89	55.556	ENSCAFG00020024352	MTREX	89	55.556	Canis_lupus_dingo
YJL050W	MTR4	89	55.346	ENSCHIG00000024413	MTREX	89	55.346	Capra_hircus
YJL050W	MTR4	87	65.350	ENSTSYG00000007389	MTREX	89	65.350	Carlito_syrichta
YJL050W	MTR4	80	49.637	ENSCAPG00000008696	MTREX	88	50.122	Cavia_aperea
YJL050W	MTR4	89	55.451	ENSCPOG00000009797	MTREX	89	55.451	Cavia_porcellus
YJL050W	MTR4	89	55.451	ENSCCAG00000014177	MTREX	89	55.451	Cebus_capucinus
YJL050W	MTR4	89	55.556	ENSCATG00000042153	MTREX	89	55.556	Cercocebus_atys
YJL050W	MTR4	89	55.451	ENSCLAG00000006622	MTREX	89	55.451	Chinchilla_lanigera
YJL050W	MTR4	89	53.854	ENSCSAG00000016445	MTREX	89	53.854	Chlorocebus_sabaeus
YJL050W	MTR4	95	53.869	ENSCPBG00000026551	MTREX	84	56.184	Chrysemys_picta_bellii
YJL050W	MTR4	89	53.556	ENSCING00000003239	-	91	53.556	Ciona_intestinalis
YJL050W	MTR4	99	50.789	ENSCSAVG00000009304	-	99	54.382	Ciona_savignyi
YJL050W	MTR4	89	55.556	ENSCANG00000035770	MTREX	89	55.556	Colobus_angolensis_palliatus
YJL050W	MTR4	89	55.451	ENSCGRG00001024680	Mtrex	89	55.451	Cricetulus_griseus_chok1gshd
YJL050W	MTR4	89	55.451	ENSCGRG00000000307	Mtrex	89	55.451	Cricetulus_griseus_crigri
YJL050W	MTR4	92	53.622	ENSCSEG00000018621	mtrex	92	54.060	Cynoglossus_semilaevis
YJL050W	MTR4	92	53.838	ENSCVAG00000004556	mtrex	94	54.188	Cyprinodon_variegatus
YJL050W	MTR4	99	51.306	ENSDARG00000013457	mtrex	90	55.649	Danio_rerio
YJL050W	MTR4	89	55.451	ENSDNOG00000015375	MTREX	89	55.451	Dasypus_novemcinctus
YJL050W	MTR4	89	55.451	ENSDORG00000006782	Mtrex	89	55.451	Dipodomys_ordii
YJL050W	MTR4	100	48.535	FBgn0001986	Mtr4	88	52.510	Drosophila_melanogaster
YJL050W	MTR4	70	55.453	ENSETEG00000000727	MTREX	74	53.229	Echinops_telfairi
YJL050W	MTR4	95	53.020	ENSEBUG00000012869	mtrex	90	55.824	Eptatretus_burgeri
YJL050W	MTR4	89	55.451	ENSEASG00005013270	MTREX	88	57.101	Equus_asinus_asinus
YJL050W	MTR4	89	55.451	ENSECAG00000023723	MTREX	88	62.158	Equus_caballus
YJL050W	MTR4	81	60.153	ENSEEUG00000000527	MTREX	89	49.412	Erinaceus_europaeus
YJL050W	MTR4	94	53.079	ENSELUG00000004898	mtrex	98	56.113	Esox_lucius
YJL050W	MTR4	99	51.215	ENSFCAG00000010575	MTREX	89	55.451	Felis_catus
YJL050W	MTR4	89	55.929	ENSFALG00000010850	MTREX	90	55.929	Ficedula_albicollis
YJL050W	MTR4	89	55.136	ENSFDAG00000011199	MTREX	89	55.136	Fukomys_damarensis
YJL050W	MTR4	95	52.734	ENSFHEG00000023014	mtrex	91	55.241	Fundulus_heteroclitus
YJL050W	MTR4	89	54.782	ENSGMOG00000014702	mtrex	94	54.829	Gadus_morhua
YJL050W	MTR4	99	51.631	ENSGALG00000014709	MTREX	78	55.404	Gallus_gallus
YJL050W	MTR4	95	52.437	ENSGAFG00000012425	mtrex	95	55.126	Gambusia_affinis
YJL050W	MTR4	87	55.235	ENSGACG00000016260	mtrex	96	55.496	Gasterosteus_aculeatus
YJL050W	MTR4	89	56.080	ENSGAGG00000020036	MTREX	90	56.080	Gopherus_agassizii
YJL050W	MTR4	89	55.556	ENSGGOG00000001867	MTREX	89	55.556	Gorilla_gorilla
YJL050W	MTR4	95	52.440	ENSHBUG00000006229	mtrex	91	54.822	Haplochromis_burtoni
YJL050W	MTR4	89	55.346	ENSHGLG00000019445	SKIV2L2	90	55.346	Heterocephalus_glaber_female
YJL050W	MTR4	89	55.346	ENSHGLG00100011833	SKIV2L2	90	55.346	Heterocephalus_glaber_male
YJL050W	MTR4	90	53.869	ENSHCOG00000019995	mtrex	99	53.869	Hippocampus_comes
YJL050W	MTR4	89	56.008	ENSIPUG00000024348	skiv2l2	91	55.381	Ictalurus_punctatus
YJL050W	MTR4	89	55.451	ENSSTOG00000010802	MTREX	89	55.451	Ictidomys_tridecemlineatus
YJL050W	MTR4	89	52.411	ENSJJAG00000020975	Mtrex	89	52.411	Jaculus_jaculus
YJL050W	MTR4	89	54.869	ENSKMAG00000012642	mtrex	93	54.927	Kryptolebias_marmoratus
YJL050W	MTR4	89	55.359	ENSLBEG00000019367	mtrex	95	55.983	Labrus_bergylta
YJL050W	MTR4	99	52.288	ENSLACG00000009075	MTREX	94	54.564	Latimeria_chalumnae
YJL050W	MTR4	99	52.048	ENSLOCG00000010186	mtrex	90	55.975	Lepisosteus_oculatus
YJL050W	MTR4	88	53.960	ENSLAFG00000010497	MTREX	89	53.960	Loxodonta_africana
YJL050W	MTR4	89	55.556	ENSMFAG00000031610	MTREX	89	55.556	Macaca_fascicularis
YJL050W	MTR4	89	55.556	ENSMMUG00000010379	MTREX	89	55.556	Macaca_mulatta
YJL050W	MTR4	89	55.556	ENSMNEG00000032746	MTREX	89	55.556	Macaca_nemestrina
YJL050W	MTR4	89	55.556	ENSMLEG00000041051	MTREX	89	55.556	Mandrillus_leucophaeus
YJL050W	MTR4	89	55.590	ENSMAMG00000016753	mtrex	94	55.846	Mastacembelus_armatus
YJL050W	MTR4	95	52.440	ENSMZEG00005000414	mtrex	91	54.822	Maylandia_zebra
YJL050W	MTR4	92	41.833	ENSMGAG00000003980	MTREX	99	41.833	Meleagris_gallopavo
YJL050W	MTR4	89	55.556	ENSMAUG00000010727	Mtrex	89	55.556	Mesocricetus_auratus
YJL050W	MTR4	89	55.451	ENSMICG00000012779	MTREX	89	55.451	Microcebus_murinus
YJL050W	MTR4	89	55.451	ENSMOCG00000019886	Mtrex	89	55.451	Microtus_ochrogaster
YJL050W	MTR4	94	53.498	ENSMMOG00000002476	mtrex	94	55.370	Mola_mola
YJL050W	MTR4	89	55.194	ENSMODG00000019494	MTREX	90	55.194	Monodelphis_domestica
YJL050W	MTR4	89	52.049	ENSMALG00000002917	mtrex	96	52.303	Monopterus_albus
YJL050W	MTR4	89	55.975	MGP_CAROLIEiJ_G0018896	Mtrex	90	55.975	Mus_caroli
YJL050W	MTR4	89	55.870	ENSMUSG00000016018	Mtrex	90	55.870	Mus_musculus
YJL050W	MTR4	89	55.870	MGP_PahariEiJ_G0015967	Mtrex	90	55.870	Mus_pahari
YJL050W	MTR4	89	55.870	MGP_SPRETEiJ_G0019775	Mtrex	90	55.870	Mus_spretus
YJL050W	MTR4	89	55.451	ENSMPUG00000007619	MTREX	89	55.451	Mustela_putorius_furo
YJL050W	MTR4	89	55.277	ENSMLUG00000001152	MTREX	90	55.277	Myotis_lucifugus
YJL050W	MTR4	89	55.556	ENSNGAG00000011938	Mtrex	89	55.556	Nannospalax_galili
YJL050W	MTR4	95	52.440	ENSNBRG00000011293	mtrex	91	54.822	Neolamprologus_brichardi
YJL050W	MTR4	89	52.615	ENSNLEG00000001494	MTREX	89	52.615	Nomascus_leucogenys
YJL050W	MTR4	67	65.339	ENSMEUG00000006496	-	67	65.339	Notamacropus_eugenii
YJL050W	MTR4	89	46.548	ENSOPRG00000008009	MTREX	90	46.548	Ochotona_princeps
YJL050W	MTR4	89	55.381	ENSODEG00000017234	MTREX	89	55.381	Octodon_degus
YJL050W	MTR4	95	52.249	ENSONIG00000007587	mtrex	90	55.417	Oreochromis_niloticus
YJL050W	MTR4	99	51.589	ENSOCUG00000004463	MTREX	90	55.556	Oryctolagus_cuniculus
YJL050W	MTR4	99	50.783	ENSORLG00000005443	mtrex	90	55.057	Oryzias_latipes
YJL050W	MTR4	92	53.421	ENSORLG00020006329	mtrex	94	53.568	Oryzias_latipes_hni
YJL050W	MTR4	99	50.876	ENSORLG00015012924	mtrex	94	53.668	Oryzias_latipes_hsok
YJL050W	MTR4	92	53.360	ENSOMEG00000008825	mtrex	94	53.374	Oryzias_melastigma
YJL050W	MTR4	89	55.451	ENSOGAG00000002886	MTREX	89	55.451	Otolemur_garnettii
YJL050W	MTR4	89	55.172	ENSOARG00000007764	MTREX	89	55.172	Ovis_aries
YJL050W	MTR4	89	55.556	ENSPPAG00000039291	MTREX	89	55.556	Pan_paniscus
YJL050W	MTR4	99	51.215	ENSPPRG00000019701	MTREX	89	55.451	Panthera_pardus
YJL050W	MTR4	99	50.093	ENSPTIG00000009313	MTREX	89	54.193	Panthera_tigris_altaica
YJL050W	MTR4	89	55.556	ENSPTRG00000016878	MTREX	89	55.556	Pan_troglodytes
YJL050W	MTR4	89	55.556	ENSPANG00000009697	MTREX	89	55.556	Papio_anubis
YJL050W	MTR4	99	51.937	ENSPKIG00000020833	mtrex	95	55.370	Paramormyrops_kingsleyae
YJL050W	MTR4	89	55.824	ENSPSIG00000012150	MTREX	90	55.824	Pelodiscus_sinensis
YJL050W	MTR4	89	54.479	ENSPMGG00000002582	mtrex	93	54.812	Periophthalmus_magnuspinnatus
YJL050W	MTR4	95	48.346	ENSPMAG00000009668	mtrex	90	51.987	Petromyzon_marinus
YJL050W	MTR4	89	55.194	ENSPCIG00000024730	MTREX	98	55.194	Phascolarctos_cinereus
YJL050W	MTR4	75	51.432	ENSPFOG00000003141	mtrex	99	51.681	Poecilia_formosa
YJL050W	MTR4	95	52.585	ENSPLAG00000021311	mtrex	94	53.737	Poecilia_latipinna
YJL050W	MTR4	89	54.298	ENSPMEG00000010597	mtrex	97	54.717	Poecilia_mexicana
YJL050W	MTR4	92	53.636	ENSPREG00000003089	mtrex	94	53.737	Poecilia_reticulata
YJL050W	MTR4	87	55.615	ENSPPYG00000015469	MTREX	87	55.615	Pongo_abelii
YJL050W	MTR4	77	50.000	ENSPCAG00000013120	MTREX	77	50.000	Procavia_capensis
YJL050W	MTR4	82	54.944	ENSPCOG00000018092	MTREX	89	54.944	Propithecus_coquereli
YJL050W	MTR4	89	55.451	ENSPVAG00000002445	MTREX	89	55.451	Pteropus_vampyrus
YJL050W	MTR4	95	52.536	ENSPNYG00000006164	mtrex	91	54.927	Pundamilia_nyererei
YJL050W	MTR4	95	53.262	ENSPNAG00000008794	mtrex	99	52.000	Pygocentrus_nattereri
YJL050W	MTR4	88	55.263	ENSRNOG00000010125	Mtrex	87	55.263	Rattus_norvegicus
YJL050W	MTR4	89	54.298	ENSRBIG00000034930	MTREX	89	54.298	Rhinopithecus_bieti
YJL050W	MTR4	89	55.556	ENSRROG00000039895	MTREX	89	55.556	Rhinopithecus_roxellana
YJL050W	MTR4	89	55.451	ENSSBOG00000026693	MTREX	91	55.451	Saimiri_boliviensis_boliviensis
YJL050W	MTR4	89	55.194	ENSSHAG00000004600	MTREX	93	55.194	Sarcophilus_harrisii
YJL050W	MTR4	96	53.965	ENSSFOG00015014355	skiv2l2	91	56.949	Scleropages_formosus
YJL050W	MTR4	89	55.057	ENSSMAG00000007572	mtrex	90	55.312	Scophthalmus_maximus
YJL050W	MTR4	92	54.518	ENSSDUG00000023789	mtrex	93	56.042	Seriola_dumerili
YJL050W	MTR4	92	54.518	ENSSLDG00000006301	mtrex	93	55.892	Seriola_lalandi_dorsalis
YJL050W	MTR4	89	55.346	ENSSARG00000008387	MTREX	89	55.346	Sorex_araneus
YJL050W	MTR4	77	76.415	ENSSPUG00000007071	MTREX	85	76.415	Sphenodon_punctatus
YJL050W	MTR4	89	54.612	ENSSPAG00000011319	mtrex	92	55.136	Stegastes_partitus
YJL050W	MTR4	89	55.451	ENSSSCG00000016911	MTREX	89	55.451	Sus_scrofa
YJL050W	MTR4	99	51.811	ENSTGUG00000002480	MTREX	90	55.929	Taeniopygia_guttata
YJL050W	MTR4	89	55.370	ENSTRUG00000014571	mtrex	91	55.473	Takifugu_rubripes
YJL050W	MTR4	86	45.797	ENSTBEG00000007769	MTREX	87	45.797	Tupaia_belangeri
YJL050W	MTR4	89	55.346	ENSTTRG00000008678	MTREX	89	55.346	Tursiops_truncatus
YJL050W	MTR4	89	55.451	ENSUAMG00000023061	MTREX	89	55.451	Ursus_americanus
YJL050W	MTR4	94	52.929	ENSUMAG00000009373	MTREX	99	55.107	Ursus_maritimus
YJL050W	MTR4	83	66.800	ENSVPAG00000011174	MTREX	83	66.800	Vicugna_pacos
YJL050W	MTR4	89	55.451	ENSVVUG00000021337	MTREX	89	55.451	Vulpes_vulpes
YJL050W	MTR4	99	52.275	ENSXETG00000032798	MTREX	90	56.080	Xenopus_tropicalis
YJL050W	MTR4	94	53.333	ENSXMAG00000004799	mtrex	94	54.612	Xiphophorus_maculatus