EuRBPDB

Description

Ensembl ID: YJL080C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 3669
Position: chrX:285558-289226
Accession: S000003616
RBP type: canonical RBP
Summary: Essential RNA-binding G protein effector of mating response pathway%3B ligand-activated RNA-binding protein that delivers RNAs involved in polarization and perpetualizing mating signal to shmoo tip during pheromone signaling%3B Scp160p-mediated RNA trafficking essential for chemotropism and successful mating%3B mainly associated with nuclear envelope and ER%2C interacts in mRNA-dependent manner with translating ribosomes via multiple KH domains%2C similar to vertebrate vigilins

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YJL080C_mRNA	KH_1	PF00013.29	4.7e-89	1	7
YJL080C_mRNA	KH_1	PF00013.29	4.7e-89	2	7
YJL080C_mRNA	KH_1	PF00013.29	4.7e-89	3	7
YJL080C_mRNA	KH_1	PF00013.29	4.7e-89	4	7
YJL080C_mRNA	KH_1	PF00013.29	4.7e-89	5	7
YJL080C_mRNA	KH_1	PF00013.29	4.7e-89	6	7
YJL080C_mRNA	KH_1	PF00013.29	4.7e-89	7	7

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl.PAR_CL & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YJL080C_mRNA	-	3669	-	YJL080C_mRNA	1222 (aa)	-	P06105

Gene Model

Protein-Protein Interaction (PPI)