EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YJL109C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Nucleolar protein%3B component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA%3B mutant has increased aneuploidy tolerance
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 5310 bases
Position: chrX:212000-217309
Accession: S000003645
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YJL109C_mRNA	U3snoRNP10	PF12397.8	5.6e-21	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YJL109C_mRNA	-	5310	-	YJL109C_mRNA	1769 (aa)	-	P42945

Gene Model

Click here to download YJL109C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YJL109C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YJL109C	-	65	33.178	ENSAPOG00000008169	heatr1	52	33.178	Acanthochromis_polyacanthus
YJL109C	-	66	31.132	ENSACIG00000015343	heatr1	52	31.132	Amphilophus_citrinellus
YJL109C	-	64	32.710	ENSAPEG00000009996	heatr1	53	32.710	Amphiprion_percula
YJL109C	-	67	31.193	ENSATEG00000013260	heatr1	52	31.193	Anabas_testudineus
YJL109C	-	67	32.547	ENSTSYG00000000988	HEATR1	56	32.547	Carlito_syrichta
YJL109C	-	61	36.306	ENSCCAG00000037071	HEATR1	56	32.075	Cebus_capucinus
YJL109C	-	61	36.306	ENSCATG00000021120	HEATR1	53	36.306	Cercocebus_atys
YJL109C	-	64	32.683	ENSCSAG00000009731	HEATR1	51	32.683	Chlorocebus_sabaeus
YJL109C	-	61	36.306	ENSCANG00000027702	HEATR1	51	36.306	Colobus_angolensis_palliatus
YJL109C	-	67	32.547	ENSDNOG00000009046	HEATR1	51	32.547	Dasypus_novemcinctus
YJL109C	-	61	36.306	ENSMFAG00000044672	HEATR1	51	36.306	Macaca_fascicularis
YJL109C	-	61	36.306	ENSMMUG00000015135	HEATR1	51	36.306	Macaca_mulatta
YJL109C	-	61	36.306	ENSMNEG00000035612	HEATR1	51	36.306	Macaca_nemestrina
YJL109C	-	61	36.306	ENSMLEG00000035012	HEATR1	53	36.306	Mandrillus_leucophaeus
YJL109C	-	67	36.943	ENSMICG00000015859	HEATR1	51	36.943	Microcebus_murinus
YJL109C	-	62	39.241	ENSMODG00000007936	HEATR1	51	39.241	Monodelphis_domestica
YJL109C	-	70	34.146	ENSMUSG00000050244	Heatr1	51	34.146	Mus_musculus
YJL109C	-	69	33.962	MGP_PahariEiJ_G0019273	Heatr1	51	33.962	Mus_pahari
YJL109C	-	68	34.146	MGP_SPRETEiJ_G0019081	Heatr1	51	34.146	Mus_spretus
YJL109C	-	64	31.604	ENSNLEG00000003345	HEATR1	56	31.604	Nomascus_leucogenys
YJL109C	-	70	32.075	ENSONIG00000019095	heatr1	52	32.075	Oreochromis_niloticus
YJL109C	-	65	30.660	ENSORLG00015018281	heatr1	52	30.660	Oryzias_latipes_hsok
YJL109C	-	64	32.075	ENSPPAG00000036487	HEATR1	55	32.075	Pan_paniscus
YJL109C	-	67	36.943	ENSPPRG00000014254	HEATR1	51	36.943	Panthera_pardus
YJL109C	-	64	32.075	ENSPTRG00000002141	HEATR1	53	32.075	Pan_troglodytes
YJL109C	-	61	36.306	ENSPANG00000020212	HEATR1	51	36.306	Papio_anubis
YJL109C	-	62	39.241	ENSPCIG00000008351	HEATR1	51	39.241	Phascolarctos_cinereus
YJL109C	-	64	31.604	ENSPPYG00000000085	HEATR1	54	31.604	Pongo_abelii
YJL109C	-	67	36.943	ENSPCOG00000018534	HEATR1	59	36.943	Propithecus_coquereli
YJL109C	-	61	36.306	ENSRBIG00000039995	HEATR1	51	36.306	Rhinopithecus_bieti
YJL109C	-	61	36.306	ENSRROG00000037217	HEATR1	51	36.306	Rhinopithecus_roxellana
YJL109C	-	78	30.986	ENSSFOG00015009818	heatr1	55	30.986	Scleropages_formosus
YJL109C	-	65	32.195	ENSSDUG00000013751	heatr1	52	32.195	Seriola_dumerili