EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YJL124C (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: SPB8
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 519
Position: chrX:187126-187644
Accession: S000003660
RBP type: canonical RBP
Summary: Lsm (Like Sm) protein%3B forms heteroheptameric complex (with Lsm2p%2C Lsm3p%2C Lsm4p%2C Lsm5p%2C Lsm6p%2C and Lsm7p) involved in degradation of cytoplasmic mRNAs%3B also enters the nucleus and positively regulates transcription initiation%3B unlike most Sm-like proteins%2C Lsm1p requires both its SM-domain and C-terminal domain for RNA-binding%3B binds to mRNAs under glucose starvation%2C most often in the 3' UTR%3B forms cytoplasmic foci upon DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YJL124C_mRNA	LSM	PF01423.22	1.2e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	MS & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YJL124C_mRNA	-	519	-	YJL124C_mRNA	172 (aa)	-	P47017

Gene Model

Click here to download YJL124C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YJL124C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YJL124C	LSM1	74	38.636	ENSAPOG00000010833	lsm1	80	43.363	Acanthochromis_polyacanthus
YJL124C	LSM1	66	43.363	ENSAOCG00000017997	-	80	43.363	Amphiprion_ocellaris
YJL124C	LSM1	66	43.363	ENSAOCG00000017096	lsm1	80	43.363	Amphiprion_ocellaris
YJL124C	LSM1	66	43.363	ENSAPEG00000011669	lsm1	80	43.363	Amphiprion_percula
YJL124C	LSM1	66	44.248	ENSATEG00000022266	lsm1	80	44.248	Anabas_testudineus
YJL124C	LSM1	66	44.248	ENSACLG00000011400	lsm1	80	44.248	Astatotilapia_calliptera
YJL124C	LSM1	67	47.009	ENSAMXG00000005441	lsm1	83	47.009	Astyanax_mexicanus
YJL124C	LSM1	70	42.149	ENSCLAG00000001137	LSM1	87	42.149	Chinchilla_lanigera
YJL124C	LSM1	69	45.378	ENSCPBG00000006569	LSM1	76	45.378	Chrysemys_picta_bellii
YJL124C	LSM1	70	42.149	ENSCGRG00001024560	-	87	42.149	Cricetulus_griseus_chok1gshd
YJL124C	LSM1	70	42.149	ENSCGRG00000006554	-	87	42.149	Cricetulus_griseus_crigri
YJL124C	LSM1	66	41.228	ENSCSEG00000008319	lsm1	74	41.228	Cynoglossus_semilaevis
YJL124C	LSM1	66	42.105	ENSCSEG00000010570	lsm1	74	42.105	Cynoglossus_semilaevis
YJL124C	LSM1	66	44.248	ENSCVAG00000003871	lsm1	80	44.248	Cyprinodon_variegatus
YJL124C	LSM1	67	46.154	ENSDARG00000043177	lsm1	83	46.154	Danio_rerio
YJL124C	LSM1	58	48.485	FBgn0261067	LSm1	92	40.741	Drosophila_melanogaster
YJL124C	LSM1	70	42.149	ENSEASG00005016677	LSM1	87	42.149	Equus_asinus_asinus
YJL124C	LSM1	70	42.149	ENSECAG00000010461	LSM1	87	42.149	Equus_caballus
YJL124C	LSM1	69	41.525	ENSELUG00000023374	lsm1	81	41.525	Esox_lucius
YJL124C	LSM1	67	43.966	ENSELUG00000002322	lsm1	83	43.966	Esox_lucius
YJL124C	LSM1	62	46.729	ENSFALG00000006723	LSM1	85	46.729	Ficedula_albicollis
YJL124C	LSM1	66	44.248	ENSFHEG00000009556	lsm1	80	44.248	Fundulus_heteroclitus
YJL124C	LSM1	66	45.133	ENSGMOG00000016651	lsm1	79	45.133	Gadus_morhua
YJL124C	LSM1	67	43.966	ENSGALG00000003245	LSM1	83	43.966	Gallus_gallus
YJL124C	LSM1	66	44.248	ENSGAFG00000011355	lsm1	80	44.248	Gambusia_affinis
YJL124C	LSM1	67	43.966	ENSGACG00000011763	lsm1	81	43.966	Gasterosteus_aculeatus
YJL124C	LSM1	67	45.299	ENSGAGG00000024065	LSM1	83	45.299	Gopherus_agassizii
YJL124C	LSM1	82	35.211	ENSHBUG00000010897	lsm1	80	44.248	Haplochromis_burtoni
YJL124C	LSM1	63	42.727	ENSHCOG00000017233	lsm1	74	42.727	Hippocampus_comes
YJL124C	LSM1	72	43.411	ENSIPUG00000002312	LSM1	95	43.411	Ictalurus_punctatus
YJL124C	LSM1	66	44.248	ENSKMAG00000003016	lsm1	80	44.248	Kryptolebias_marmoratus
YJL124C	LSM1	66	42.478	ENSLBEG00000022352	lsm1	80	42.478	Labrus_bergylta
YJL124C	LSM1	62	44.340	ENSLACG00000010947	LSM1	83	44.340	Latimeria_chalumnae
YJL124C	LSM1	66	44.248	ENSMAMG00000007464	lsm1	80	44.248	Mastacembelus_armatus
YJL124C	LSM1	66	44.248	ENSMZEG00005010321	lsm1	80	44.248	Maylandia_zebra
YJL124C	LSM1	67	43.966	ENSMGAG00000002125	LSM1	83	43.966	Meleagris_gallopavo
YJL124C	LSM1	70	42.149	ENSMOCG00000022817	Lsm1	87	42.149	Microtus_ochrogaster
YJL124C	LSM1	66	41.593	ENSMMOG00000015466	lsm1	80	41.593	Mola_mola
YJL124C	LSM1	67	45.299	ENSMODG00000010732	-	83	45.299	Monodelphis_domestica
YJL124C	LSM1	70	42.149	MGP_CAROLIEiJ_G0030930	Lsm1	87	42.149	Mus_caroli
YJL124C	LSM1	70	42.149	ENSMUSG00000037296	Lsm1	87	42.149	Mus_musculus
YJL124C	LSM1	70	42.149	MGP_PahariEiJ_G0021400	Lsm1	87	42.149	Mus_pahari
YJL124C	LSM1	70	42.149	MGP_SPRETEiJ_G0032049	Lsm1	87	42.149	Mus_spretus
YJL124C	LSM1	67	47.009	ENSMPUG00000009883	LSM1	83	47.009	Mustela_putorius_furo
YJL124C	LSM1	67	45.299	ENSMEUG00000014077	LSM1	83	45.299	Notamacropus_eugenii
YJL124C	LSM1	64	42.342	ENSOPRG00000000333	LSM1	91	42.342	Ochotona_princeps
YJL124C	LSM1	66	44.248	ENSONIG00000010782	lsm1	80	44.248	Oreochromis_niloticus
YJL124C	LSM1	67	45.299	ENSOANG00000003256	LSM1	83	45.299	Ornithorhynchus_anatinus
YJL124C	LSM1	67	43.966	ENSORLG00000030288	lsm1	83	43.966	Oryzias_latipes
YJL124C	LSM1	67	43.966	ENSORLG00020003941	lsm1	83	43.966	Oryzias_latipes_hni
YJL124C	LSM1	67	41.880	ENSORLG00020006213	-	71	41.880	Oryzias_latipes_hni
YJL124C	LSM1	67	43.966	ENSORLG00015018350	lsm1	83	43.966	Oryzias_latipes_hsok
YJL124C	LSM1	66	44.248	ENSOMEG00000012454	lsm1	80	44.248	Oryzias_melastigma
YJL124C	LSM1	67	42.241	ENSPKIG00000001839	lsm1	83	42.241	Paramormyrops_kingsleyae
YJL124C	LSM1	69	43.333	ENSPSIG00000012563	LSM1	87	43.333	Pelodiscus_sinensis
YJL124C	LSM1	59	48.039	ENSPMAG00000002671	lsm1	85	48.039	Petromyzon_marinus
YJL124C	LSM1	67	45.299	ENSPCIG00000008880	LSM1	83	45.299	Phascolarctos_cinereus
YJL124C	LSM1	66	44.248	ENSPFOG00000016029	lsm1	80	44.248	Poecilia_formosa
YJL124C	LSM1	66	44.248	ENSPLAG00000007879	lsm1	80	44.248	Poecilia_latipinna
YJL124C	LSM1	66	44.248	ENSPMEG00000023550	lsm1	80	44.248	Poecilia_mexicana
YJL124C	LSM1	66	44.248	ENSPREG00000009574	lsm1	80	44.248	Poecilia_reticulata
YJL124C	LSM1	66	44.248	ENSPNYG00000018067	lsm1	80	44.248	Pundamilia_nyererei
YJL124C	LSM1	67	47.009	ENSPNAG00000013707	lsm1	83	47.009	Pygocentrus_nattereri
YJL124C	LSM1	70	42.149	ENSRNOG00000015375	Lsm1	87	42.149	Rattus_norvegicus
YJL124C	LSM1	67	45.299	ENSSHAG00000017260	LSM1	83	45.299	Sarcophilus_harrisii
YJL124C	LSM1	67	42.241	ENSSFOG00015019528	lsm1	83	42.241	Scleropages_formosus
YJL124C	LSM1	66	44.248	ENSSMAG00000004930	lsm1	80	44.248	Scophthalmus_maximus
YJL124C	LSM1	66	41.593	ENSSDUG00000021823	lsm1	80	41.593	Seriola_dumerili
YJL124C	LSM1	66	41.593	ENSSLDG00000012154	lsm1	80	41.593	Seriola_lalandi_dorsalis
YJL124C	LSM1	67	45.299	ENSSPUG00000014878	LSM1	83	45.299	Sphenodon_punctatus
YJL124C	LSM1	66	44.248	ENSSPAG00000020548	lsm1	80	44.248	Stegastes_partitus
YJL124C	LSM1	70	42.149	ENSSSCG00000039058	LSM1	87	42.149	Sus_scrofa
YJL124C	LSM1	67	45.299	ENSTGUG00000004793	LSM1	83	45.299	Taeniopygia_guttata
YJL124C	LSM1	67	42.735	ENSTRUG00000025239	lsm1	83	42.735	Takifugu_rubripes
YJL124C	LSM1	67	43.590	ENSTNIG00000004055	lsm1	83	43.590	Tetraodon_nigroviridis
YJL124C	LSM1	64	43.243	ENSTBEG00000015884	LSM1	91	43.243	Tupaia_belangeri
YJL124C	LSM1	67	42.276	ENSXETG00000009004	lsm1	88	42.276	Xenopus_tropicalis
YJL124C	LSM1	66	44.248	ENSXCOG00000015631	lsm1	80	44.248	Xiphophorus_couchianus
YJL124C	LSM1	66	44.248	ENSXMAG00000026637	lsm1	80	44.248	Xiphophorus_maculatus