EuRBPDB

Description

Ensembl ID: YJR094W-A (Gene tree)
Gene ID: -
Gene Symbol: RPL43B
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Plus strand
Length: 554
Position: chrX:608305-608858
Accession: S000003855
RBP type: canonical RBP
Summary: Ribosomal 60S subunit protein L43B%3B homologous to mammalian ribosomal protein L37A%2C no bacterial homolog%3B RPL43B has a paralog%2C RPL43A%2C that arose from the whole genome duplication%3B protein abundance increases in response to DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YJR094W-A_mRNA	Ribosomal_L37ae	PF01780.19	8.3e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YJR094W-A_mRNA	-	279	-	YJR094W-A_mRNA	92 (aa)	-	P0CX25

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YJR094W-A	RPL43B	100	100.000	YPR043W	RPL43A	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YJR094W-A	RPL43B	99	69.231	WBGene00004456	rpl-43	100	69.231	Caenorhabditis_elegans
YJR094W-A	RPL43B	88	54.545	ENSCAFG00020027145	-	88	54.545	Canis_lupus_dingo
YJR094W-A	RPL43B	99	54.945	ENSCING00000013022	-	100	54.945	Ciona_intestinalis
YJR094W-A	RPL43B	99	68.132	FBgn0261608	RpL37A	99	68.132	Drosophila_melanogaster
YJR094W-A	RPL43B	50	73.913	ENSVVUG00000007642	-	60	73.913	Vulpes_vulpes