EuRBPDB

Description

Ensembl ID: YKL059C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1326
Position: chrXI:328118-329443
Accession: S000001542
RBP type: canonical RBP
Summary: Essential conserved subunit of CPF cleavage and polyadenylation factor%3B plays a role in 3' end formation of mRNA via the specific cleavage and polyadenylation of pre-mRNA%3B contains a ubiquitin-like (UBL) domain%2C a RNA-binding zinc knuckle motif and a RING finger domain%3B both the zinc knuckle and RING finger are required for pre-mRNA binding%3B possible role in ubiquitination of Pap1p%3B relocalizes to the cytosol in response to hypoxia

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YKL059C_mRNA	zf-CCHC_2	PF13696.6	8e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YKL059C	-	59	30.337	ENSDARG00000115079	zgc:174353	83	30.038	Danio_rerio
YKL059C	-	59	30.370	ENSDARG00000113994	zgc:174354	83	30.075	Danio_rerio
YKL059C	-	59	30.741	ENSDARG00000088552	si:dkey-23f9.13	83	30.451	Danio_rerio
YKL059C	-	59	30.741	ENSDARG00000111826	zgc:174354	83	30.451	Danio_rerio
YKL059C	-	59	30.741	ENSDARG00000094335	si:dkey-23f9.12	83	30.451	Danio_rerio
YKL059C	-	59	30.451	ENSDARG00000070812	si:ch211-156l18.6	83	30.451	Danio_rerio
YKL059C	-	59	30.337	ENSDARG00000112365	zgc:174353	83	30.038	Danio_rerio
YKL059C	-	59	30.337	ENSDARG00000113889	zgc:174355	83	30.038	Danio_rerio
YKL059C	-	59	30.741	ENSDARG00000100754	CR450764.1	83	30.451	Danio_rerio