EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YKL078W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Predominantly nucleolar DEAH-box ATP-dependent RNA helicase%3B required for 18S rRNA synthesis
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Plus strand
Length: 2208 bases
Position: chrXI:288845-291052
Accession: S000001561
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YKL078W_mRNA	DEAD	PF00270.29	6.5e-10	1	1
YKL078W_mRNA	HA2	PF04408.23	1.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download YKL078W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YKL078W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YKL078W	-	87	39.969	YER013W	-	54	39.907
YKL078W	-	90	40.741	YGL120C	PRP43	85	40.444
YKL078W	-	88	37.801	YKR086W	PRP16	59	37.801
YKL078W	-	87	37.858	YNR011C	PRP2	73	37.858

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YKL078W	-	87	39.969	ENSG00000005100	DHX33	88	40.000	Homo_sapiens
YKL078W	-	87	38.556	ENSAPOG00000010132	dhx33	91	38.556	Acanthochromis_polyacanthus
YKL078W	-	87	39.538	ENSAMEG00000006026	DHX33	92	39.538	Ailuropoda_melanoleuca
YKL078W	-	87	39.198	ENSACIG00000012591	dhx33	91	39.198	Amphilophus_citrinellus
YKL078W	-	87	38.897	ENSAOCG00000007008	dhx33	91	38.897	Amphiprion_ocellaris
YKL078W	-	87	37.003	ENSAPEG00000013599	dhx33	91	37.003	Amphiprion_percula
YKL078W	-	87	38.485	ENSATEG00000005019	dhx33	91	38.485	Anabas_testudineus
YKL078W	-	84	38.792	ENSAPLG00000015593	DHX33	98	38.315	Anas_platyrhynchos
YKL078W	-	87	39.137	ENSACAG00000015095	DHX33	94	38.578	Anolis_carolinensis
YKL078W	-	87	40.458	ENSANAG00000037748	DHX33	92	40.123	Aotus_nancymaae
YKL078W	-	87	39.198	ENSACLG00000025610	dhx33	91	39.385	Astatotilapia_calliptera
YKL078W	-	87	39.939	ENSAMXG00000015875	dhx33	80	39.785	Astyanax_mexicanus
YKL078W	-	88	39.334	ENSBTAG00000032083	DHX33	89	38.998	Bos_taurus
YKL078W	-	88	33.383	WBGene00020263	let-355	78	33.778	Caenorhabditis_elegans
YKL078W	-	87	40.458	ENSCJAG00000011321	DHX33	88	40.000	Callithrix_jacchus
YKL078W	-	84	39.144	ENSCAFG00000015535	DHX33	98	39.144	Canis_familiaris
YKL078W	-	88	38.356	ENSCAFG00020016360	DHX33	92	38.356	Canis_lupus_dingo
YKL078W	-	88	39.637	ENSCHIG00000014722	DHX33	90	39.302	Capra_hircus
YKL078W	-	87	40.611	ENSTSYG00000005995	DHX33	88	40.276	Carlito_syrichta
YKL078W	-	84	40.191	ENSCAPG00000009660	DHX33	94	39.680	Cavia_aperea
YKL078W	-	88	39.637	ENSCPOG00000003681	DHX33	91	39.150	Cavia_porcellus
YKL078W	-	87	40.611	ENSCCAG00000027955	DHX33	88	40.153	Cebus_capucinus
YKL078W	-	87	40.123	ENSCATG00000029157	DHX33	88	39.847	Cercocebus_atys
YKL078W	-	87	39.816	ENSCLAG00000014171	DHX33	88	38.931	Chinchilla_lanigera
YKL078W	-	87	36.692	ENSCSAG00000012784	DHX33	90	34.483	Chlorocebus_sabaeus
YKL078W	-	68	37.795	ENSCHOG00000008707	DHX33	71	37.795	Choloepus_hoffmanni
YKL078W	-	88	39.177	ENSCPBG00000027741	DHX33	92	39.329	Chrysemys_picta_bellii
YKL078W	-	87	37.366	ENSCING00000009139	-	98	37.690	Ciona_intestinalis
YKL078W	-	87	40.305	ENSCANG00000034385	DHX33	88	39.847	Colobus_angolensis_palliatus
YKL078W	-	88	39.909	ENSCGRG00001023101	Dhx33	89	39.574	Cricetulus_griseus_chok1gshd
YKL078W	-	84	40.600	ENSCGRG00000010329	Dhx33	99	40.254	Cricetulus_griseus_crigri
YKL078W	-	87	39.043	ENSCSEG00000011017	dhx33	91	39.043	Cynoglossus_semilaevis
YKL078W	-	87	38.521	ENSCVAG00000008998	dhx33	92	38.168	Cyprinodon_variegatus
YKL078W	-	88	39.032	ENSDARG00000051785	dhx33	93	38.965	Danio_rerio
YKL078W	-	87	40.305	ENSDNOG00000016865	DHX33	82	40.153	Dasypus_novemcinctus
YKL078W	-	89	34.796	FBgn0032194	CG4901	91	34.796	Drosophila_melanogaster
YKL078W	-	89	32.349	ENSEBUG00000008342	dhx33	97	32.208	Eptatretus_burgeri
YKL078W	-	87	40.305	ENSEASG00005015338	DHX33	91	39.969	Equus_asinus_asinus
YKL078W	-	87	40.276	ENSECAG00000010272	DHX33	88	39.939	Equus_caballus
YKL078W	-	57	42.105	ENSEEUG00000008589	-	57	42.105	Erinaceus_europaeus
YKL078W	-	87	39.237	ENSELUG00000020257	dhx33	91	39.237	Esox_lucius
YKL078W	-	91	37.316	ENSFCAG00000014755	DHX33	96	36.729	Felis_catus
YKL078W	-	84	37.838	ENSFALG00000009785	DHX33	88	37.997	Ficedula_albicollis
YKL078W	-	87	38.744	ENSFDAG00000003334	DHX33	90	38.285	Fukomys_damarensis
YKL078W	-	74	40.391	ENSFHEG00000014253	dhx33	87	40.391	Fundulus_heteroclitus
YKL078W	-	87	38.176	ENSGMOG00000012350	dhx33	91	38.176	Gadus_morhua
YKL078W	-	87	38.213	ENSGAFG00000014811	dhx33	93	38.844	Gambusia_affinis
YKL078W	-	87	38.426	ENSGACG00000020229	dhx33	91	38.426	Gasterosteus_aculeatus
YKL078W	-	88	39.482	ENSGAGG00000013448	DHX33	95	39.634	Gopherus_agassizii
YKL078W	-	87	39.816	ENSGGOG00000002748	DHX33	88	39.847	Gorilla_gorilla
YKL078W	-	87	39.352	ENSHBUG00000017415	dhx33	91	39.352	Haplochromis_burtoni
YKL078W	-	87	39.663	ENSHGLG00000014753	DHX33	91	39.663	Heterocephalus_glaber_female
YKL078W	-	87	39.663	ENSHGLG00100012963	DHX33	94	39.663	Heterocephalus_glaber_male
YKL078W	-	87	38.117	ENSHCOG00000011161	dhx33	91	38.117	Hippocampus_comes
YKL078W	-	87	38.991	ENSIPUG00000011594	dhx33	91	38.769	Ictalurus_punctatus
YKL078W	-	87	40.305	ENSSTOG00000003298	DHX33	89	40.123	Ictidomys_tridecemlineatus
YKL078W	-	88	40.212	ENSJJAG00000016626	Dhx33	90	39.878	Jaculus_jaculus
YKL078W	-	87	38.176	ENSKMAG00000013595	dhx33	91	38.176	Kryptolebias_marmoratus
YKL078W	-	87	38.485	ENSLBEG00000005703	dhx33	91	38.485	Labrus_bergylta
YKL078W	-	87	38.154	ENSLACG00000018174	DHX33	92	37.904	Latimeria_chalumnae
YKL078W	-	76	33.737	ENSLOCG00000002764	dhx33	95	33.218	Lepisosteus_oculatus
YKL078W	-	87	40.516	ENSLAFG00000007136	DHX33	90	40.458	Loxodonta_africana
YKL078W	-	87	40.123	ENSMFAG00000042578	DHX33	88	39.847	Macaca_fascicularis
YKL078W	-	87	40.123	ENSMMUG00000006594	DHX33	88	39.847	Macaca_mulatta
YKL078W	-	87	37.213	ENSMNEG00000034809	DHX33	97	34.825	Macaca_nemestrina
YKL078W	-	87	40.276	ENSMLEG00000034236	DHX33	88	40.000	Mandrillus_leucophaeus
YKL078W	-	87	38.983	ENSMAMG00000005936	dhx33	91	38.983	Mastacembelus_armatus
YKL078W	-	87	39.198	ENSMZEG00005023292	dhx33	91	39.385	Maylandia_zebra
YKL078W	-	84	39.557	ENSMGAG00000003125	DHX33	98	39.082	Meleagris_gallopavo
YKL078W	-	88	39.909	ENSMAUG00000011100	Dhx33	90	39.574	Mesocricetus_auratus
YKL078W	-	87	40.305	ENSMICG00000012715	DHX33	88	39.847	Microcebus_murinus
YKL078W	-	88	39.909	ENSMOCG00000016069	Dhx33	90	39.574	Microtus_ochrogaster
YKL078W	-	85	38.050	ENSMMOG00000005732	dhx33	89	38.050	Mola_mola
YKL078W	-	89	38.671	ENSMODG00000016649	DHX33	93	38.822	Monodelphis_domestica
YKL078W	-	87	38.485	ENSMALG00000000923	dhx33	91	38.485	Monopterus_albus
YKL078W	-	88	39.757	MGP_CAROLIEiJ_G0016657	Dhx33	90	39.422	Mus_caroli
YKL078W	-	88	39.757	ENSMUSG00000040620	Dhx33	90	39.422	Mus_musculus
YKL078W	-	88	39.757	MGP_PahariEiJ_G0017788	Dhx33	89	39.422	Mus_pahari
YKL078W	-	88	39.757	MGP_SPRETEiJ_G0017493	Dhx33	90	39.422	Mus_spretus
YKL078W	-	73	37.319	ENSMPUG00000011250	DHX33	98	37.205	Mustela_putorius_furo
YKL078W	-	88	39.058	ENSMLUG00000014439	DHX33	86	37.881	Myotis_lucifugus
YKL078W	-	87	40.153	ENSNGAG00000017139	Dhx33	89	39.969	Nannospalax_galili
YKL078W	-	87	39.043	ENSNBRG00000017674	dhx33	91	39.043	Neolamprologus_brichardi
YKL078W	-	55	36.408	ENSNLEG00000009098	-	95	35.854	Nomascus_leucogenys
YKL078W	-	71	41.011	ENSMEUG00000009202	DHX33	93	41.011	Notamacropus_eugenii
YKL078W	-	87	39.357	ENSOPRG00000013163	DHX33	90	38.897	Ochotona_princeps
YKL078W	-	87	40.000	ENSODEG00000017026	DHX33	89	39.663	Octodon_degus
YKL078W	-	87	39.043	ENSONIG00000017480	dhx33	87	39.043	Oreochromis_niloticus
YKL078W	-	52	33.911	ENSOANG00000002808	-	98	34.336	Ornithorhynchus_anatinus
YKL078W	-	87	40.062	ENSOCUG00000004805	DHX33	87	39.753	Oryctolagus_cuniculus
YKL078W	-	87	37.904	ENSORLG00000011817	dhx33	91	37.904	Oryzias_latipes
YKL078W	-	87	38.059	ENSORLG00020016766	dhx33	91	38.059	Oryzias_latipes_hni
YKL078W	-	87	37.750	ENSORLG00015022753	dhx33	95	37.750	Oryzias_latipes_hsok
YKL078W	-	90	37.705	ENSOMEG00000010438	dhx33	95	37.854	Oryzias_melastigma
YKL078W	-	87	39.574	ENSOGAG00000001611	DHX33	90	37.063	Otolemur_garnettii
YKL078W	-	88	39.757	ENSOARG00000003235	DHX33	91	39.605	Ovis_aries
YKL078W	-	87	39.969	ENSPPAG00000038926	DHX33	88	40.000	Pan_paniscus
YKL078W	-	91	37.021	ENSPPRG00000009202	DHX33	93	37.021	Panthera_pardus
YKL078W	-	66	36.917	ENSPTIG00000018141	DHX33	86	36.917	Panthera_tigris_altaica
YKL078W	-	87	39.969	ENSPTRG00000008632	DHX33	88	40.000	Pan_troglodytes
YKL078W	-	87	40.276	ENSPANG00000024297	DHX33	88	40.000	Papio_anubis
YKL078W	-	87	38.863	ENSPKIG00000017401	dhx33	91	38.863	Paramormyrops_kingsleyae
YKL078W	-	84	38.792	ENSPSIG00000006293	DHX33	91	38.951	Pelodiscus_sinensis
YKL078W	-	87	38.889	ENSPMGG00000013896	dhx33	91	38.889	Periophthalmus_magnuspinnatus
YKL078W	-	88	39.878	ENSPEMG00000016472	Dhx33	90	39.726	Peromyscus_maniculatus_bairdii
YKL078W	-	89	38.822	ENSPCIG00000020074	DHX33	93	38.973	Phascolarctos_cinereus
YKL078W	-	87	38.521	ENSPFOG00000009426	dhx33	91	38.521	Poecilia_formosa
YKL078W	-	87	38.213	ENSPLAG00000017730	dhx33	91	38.213	Poecilia_latipinna
YKL078W	-	87	38.521	ENSPMEG00000012075	dhx33	96	38.915	Poecilia_mexicana
YKL078W	-	87	38.154	ENSPREG00000008239	dhx33	91	38.154	Poecilia_reticulata
YKL078W	-	87	39.695	ENSPPYG00000007871	DHX33	81	39.847	Pongo_abelii
YKL078W	-	87	36.048	ENSPCAG00000006190	DHX33	82	40.196	Procavia_capensis
YKL078W	-	87	39.816	ENSPCOG00000007524	DHX33	88	39.478	Propithecus_coquereli
YKL078W	-	87	40.030	ENSPVAG00000002467	DHX33	96	37.728	Pteropus_vampyrus
YKL078W	-	87	39.352	ENSPNYG00000021648	dhx33	91	39.352	Pundamilia_nyererei
YKL078W	-	87	40.000	ENSPNAG00000020048	dhx33	91	39.846	Pygocentrus_nattereri
YKL078W	-	88	39.909	ENSRNOG00000007054	Dhx33	90	39.574	Rattus_norvegicus
YKL078W	-	87	40.305	ENSRBIG00000040087	DHX33	94	40.541	Rhinopithecus_bieti
YKL078W	-	87	40.153	ENSRROG00000038052	DHX33	88	39.695	Rhinopithecus_roxellana
YKL078W	-	87	40.276	ENSSBOG00000020529	DHX33	90	40.123	Saimiri_boliviensis_boliviensis
YKL078W	-	84	39.905	ENSSHAG00000002762	DHX33	98	39.683	Sarcophilus_harrisii
YKL078W	-	87	39.291	ENSSFOG00015001783	dhx33	91	39.291	Scleropages_formosus
YKL078W	-	88	38.415	ENSSMAG00000000497	dhx33	92	38.415	Scophthalmus_maximus
YKL078W	-	87	38.331	ENSSDUG00000017798	dhx33	91	38.331	Seriola_dumerili
YKL078W	-	87	37.867	ENSSLDG00000020132	dhx33	91	37.867	Seriola_lalandi_dorsalis
YKL078W	-	87	39.542	ENSSARG00000009813	DHX33	90	39.084	Sorex_araneus
YKL078W	-	56	35.835	ENSSPUG00000010498	-	96	35.351	Sphenodon_punctatus
YKL078W	-	87	38.949	ENSSPAG00000012860	dhx33	91	38.949	Stegastes_partitus
YKL078W	-	57	34.679	ENSSPAG00000003711	-	96	34.679	Stegastes_partitus
YKL078W	-	90	37.075	ENSSSCG00000039064	DHX33	93	36.741	Sus_scrofa
YKL078W	-	87	37.788	ENSTGUG00000004226	DHX33	97	37.481	Taeniopygia_guttata
YKL078W	-	87	38.640	ENSTRUG00000003395	dhx33	91	38.640	Takifugu_rubripes
YKL078W	-	70	40.499	ENSTNIG00000008546	dhx33	77	40.499	Tetraodon_nigroviridis
YKL078W	-	70	38.623	ENSTTRG00000014788	DHX33	84	38.623	Tursiops_truncatus
YKL078W	-	88	39.422	ENSUAMG00000012182	DHX33	90	39.422	Ursus_americanus
YKL078W	-	88	38.356	ENSVVUG00000027336	DHX33	94	38.356	Vulpes_vulpes
YKL078W	-	88	39.117	ENSXETG00000009173	dhx33	90	39.117	Xenopus_tropicalis
YKL078W	-	87	38.154	ENSXCOG00000004969	dhx33	91	38.154	Xiphophorus_couchianus
YKL078W	-	87	38.022	ENSXMAG00000005679	dhx33	91	38.022	Xiphophorus_maculatus