EuRBPDB

Description

Ensembl ID: YKL156W (Gene tree)
Gene ID: -
Gene Symbol: RPS27A
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 600
Position: chrXI:158613-159212
Accession: S000001639
RBP type: canonical RBP
Summary: Protein component of the small (40S) ribosomal subunit%3B homologous to mammalian ribosomal protein S27%2C no bacterial homolog%3B RPS27A has a paralog%2C RPS27B%2C that arose from the whole genome duplication%3B protein abundance increases in response to DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YKL156W_mRNA	Ribosomal_S27e	PF01667.17	1.6e-30	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YKL156W_mRNA	-	249	-	YKL156W_mRNA	82 (aa)	-	P35997

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YKL156W	RPS27A	100	98.780	YHR021C	RPS27B	100	98.780

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YKL156W	RPS27A	100	64.634	WBGene00004496	rps-27	99	64.634	Caenorhabditis_elegans
YKL156W	RPS27A	100	71.951	FBgn0039300	RpS27	98	71.951	Drosophila_melanogaster
YKL156W	RPS27A	93	60.526	ENSFHEG00000004295	-	55	60.526	Fundulus_heteroclitus
YKL156W	RPS27A	100	58.537	ENSGAFG00000016054	-	59	58.537	Gambusia_affinis
YKL156W	RPS27A	95	61.538	ENSGACG00000011286	-	92	61.538	Gasterosteus_aculeatus
YKL156W	RPS27A	99	61.728	ENSMMOG00000020318	-	98	61.728	Mola_mola
YKL156W	RPS27A	95	60.256	ENSPFOG00000004190	-	98	60.256	Poecilia_formosa
YKL156W	RPS27A	100	59.756	ENSPLAG00000013332	-	98	59.756	Poecilia_latipinna
YKL156W	RPS27A	100	59.756	ENSPLAG00000023590	-	98	59.756	Poecilia_latipinna
YKL156W	RPS27A	98	58.750	ENSPMEG00000017808	-	83	60.526	Poecilia_mexicana
YKL156W	RPS27A	94	70.130	ENSSLDG00000003982	-	88	70.130	Seriola_lalandi_dorsalis
YKL156W	RPS27A	100	58.537	ENSXCOG00000010263	-	98	59.259	Xiphophorus_couchianus
YKL156W	RPS27A	93	60.526	ENSXMAG00000003387	-	88	60.526	Xiphophorus_maculatus