EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YKL172W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1284
Position: chrXI:125759-127042
Accession: S000001655
RBP type: canonical RBP
Summary: Required for 25S rRNA maturation and 60S ribosomal subunit assembly%3B localizes to the nucleolus and in foci along nuclear periphery%3B constituent of 66S pre-ribosomal particles%3B cooperates with Rrs1p and Mps3p to mediate telomere clustering by binding Sir4p%2C but is not involved in telomere tethering

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YKL172W_mRNA	Ebp2	PF05890.12	3.2e-87	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YKL172W_mRNA	-	1284	-	YKL172W_mRNA	427 (aa)	-	P36049

Gene Model

Click here to download YKL172W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YKL172W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YKL172W	-	56	34.074	ENSAPOG00000011943	ebna1bp2	82	34.815	Acanthochromis_polyacanthus
YKL172W	-	53	35.156	ENSACIG00000011514	ebna1bp2	82	35.094	Amphilophus_citrinellus
YKL172W	-	56	34.074	ENSAOCG00000005324	ebna1bp2	82	34.815	Amphiprion_ocellaris
YKL172W	-	56	34.074	ENSAPEG00000011835	ebna1bp2	82	34.815	Amphiprion_percula
YKL172W	-	63	32.381	ENSATEG00000020458	ebna1bp2	84	34.191	Anabas_testudineus
YKL172W	-	52	37.931	ENSCPBG00000002595	EBNA1BP2	84	36.719	Chrysemys_picta_bellii
YKL172W	-	56	33.579	ENSCSEG00000018795	ebna1bp2	83	34.457	Cynoglossus_semilaevis
YKL172W	-	50	34.632	ENSCVAG00000004152	ebna1bp2	82	35.361	Cyprinodon_variegatus
YKL172W	-	54	33.465	ENSDARG00000054980	ebna1bp2	85	33.206	Danio_rerio
YKL172W	-	55	37.097	ENSDNOG00000024715	EBNA1BP2	79	37.097	Dasypus_novemcinctus
YKL172W	-	51	30.556	ENSELUG00000021634	ebna1bp2	81	32.061	Esox_lucius
YKL172W	-	50	35.874	ENSFALG00000005658	EBNA1BP2	76	35.983	Ficedula_albicollis
YKL172W	-	54	36.863	ENSFHEG00000001475	ebna1bp2	80	36.538	Fundulus_heteroclitus
YKL172W	-	54	33.083	ENSGMOG00000004150	ebna1bp2	85	34.400	Gadus_morhua
YKL172W	-	56	34.717	ENSGAFG00000008885	ebna1bp2	84	36.226	Gambusia_affinis
YKL172W	-	56	34.815	ENSGACG00000006802	ebna1bp2	87	35.556	Gasterosteus_aculeatus
YKL172W	-	56	35.581	ENSGAGG00000018237	EBNA1BP2	81	36.653	Gopherus_agassizii
YKL172W	-	54	34.902	ENSHBUG00000023329	ebna1bp2	82	34.981	Haplochromis_burtoni
YKL172W	-	64	33.010	ENSKMAG00000010961	ebna1bp2	84	34.866	Kryptolebias_marmoratus
YKL172W	-	52	34.711	ENSLBEG00000014254	ebna1bp2	83	34.444	Labrus_bergylta
YKL172W	-	56	34.799	ENSLOCG00000006438	ebna1bp2	82	34.559	Lepisosteus_oculatus
YKL172W	-	54	33.962	ENSMAMG00000009561	ebna1bp2	80	34.717	Mastacembelus_armatus
YKL172W	-	54	34.109	ENSMMOG00000001755	ebna1bp2	84	34.717	Mola_mola
YKL172W	-	63	32.155	ENSMODG00000011412	EBNA1BP2	60	38.728	Monodelphis_domestica
YKL172W	-	56	34.572	ENSMALG00000017391	ebna1bp2	85	34.944	Monopterus_albus
YKL172W	-	56	34.981	ENSNBRG00000018937	ebna1bp2	82	35.361	Neolamprologus_brichardi
YKL172W	-	55	35.743	ENSODEG00000001868	EBNA1BP2	92	33.922	Octodon_degus
YKL172W	-	56	34.601	ENSONIG00000008855	ebna1bp2	82	34.981	Oreochromis_niloticus
YKL172W	-	50	38.158	ENSOANG00000001141	EBNA1BP2	73	38.158	Ornithorhynchus_anatinus
YKL172W	-	56	34.231	ENSORLG00000010609	ebna1bp2	82	35.000	Oryzias_latipes
YKL172W	-	56	34.231	ENSORLG00020009809	ebna1bp2	82	35.000	Oryzias_latipes_hni
YKL172W	-	56	34.231	ENSORLG00015005799	ebna1bp2	82	35.000	Oryzias_latipes_hsok
YKL172W	-	54	35.294	ENSOMEG00000008553	ebna1bp2	82	36.122	Oryzias_melastigma
YKL172W	-	50	34.348	ENSPKIG00000011907	ebna1bp2	81	34.109	Paramormyrops_kingsleyae
YKL172W	-	52	36.441	ENSPSIG00000003073	EBNA1BP2	76	35.135	Pelodiscus_sinensis
YKL172W	-	54	33.955	ENSPMGG00000010627	ebna1bp2	76	35.317	Periophthalmus_magnuspinnatus
YKL172W	-	70	32.710	ENSPCIG00000013641	EBNA1BP2	61	35.537	Phascolarctos_cinereus
YKL172W	-	56	34.328	ENSPFOG00000006385	ebna1bp2	77	35.821	Poecilia_formosa
YKL172W	-	56	35.075	ENSPLAG00000001407	ebna1bp2	84	35.821	Poecilia_latipinna
YKL172W	-	56	34.328	ENSPMEG00000000536	ebna1bp2	84	36.090	Poecilia_mexicana
YKL172W	-	56	34.701	ENSPREG00000021076	ebna1bp2	84	36.194	Poecilia_reticulata
YKL172W	-	51	34.483	ENSPNAG00000017674	ebna1bp2	83	33.977	Pygocentrus_nattereri
YKL172W	-	69	34.169	ENSSFOG00015000181	ebna1bp2	82	36.328	Scleropages_formosus
YKL172W	-	54	34.615	ENSSMAG00000020600	ebna1bp2	80	35.448	Scophthalmus_maximus
YKL172W	-	54	34.615	ENSSPAG00000005176	ebna1bp2	82	35.075	Stegastes_partitus
YKL172W	-	50	35.841	ENSTGUG00000007072	-	79	35.294	Taeniopygia_guttata
YKL172W	-	55	35.448	ENSTRUG00000018483	ebna1bp2	79	36.508	Takifugu_rubripes
YKL172W	-	56	31.985	ENSTNIG00000018092	ebna1bp2	81	35.458	Tetraodon_nigroviridis
YKL172W	-	66	33.657	ENSXETG00000009545	ebna1bp2	79	37.154	Xenopus_tropicalis
YKL172W	-	56	35.714	ENSXMAG00000011341	ebna1bp2	87	36.466	Xiphophorus_maculatus