EuRBPDB

Description

Ensembl ID: YKR014C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 705
Position: chrXI:465367-466071
Accession: S000001722
RBP type: canonical RBP
Summary: Endosomal Rab family GTPase%3B required for vacuolar protein sorting%2C endocytosis and multivesicular body (MVB) biogenesis and sorting%3B required for localization of the CORVET complex to endosomes%3B involved in autophagy and ionic stress tolerance%3B similar to Vps21p and Ypt53p%3B mammalian Rab5 homolog%3B protein abundance increases in response to DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YKR014C_mRNA	MMR_HSR1	PF01926.23	4.1e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YKR014C	-	99	33.475	YLR262C	-	97	33.475
YKR014C	-	82	39.896	YER031C	YPT31	74	39.896
YKR014C	-	80	32.984	YML001W	YPT7	79	32.984
YKR014C	-	82	53.125	YNL093W	-	77	53.125
YKR014C	-	91	35.321	YGL210W	-	83	35.321
YKR014C	-	90	31.429	YFL005W	SEC4	91	31.169
YKR014C	-	75	43.503	YBR264C	-	75	43.503
YKR014C	-	98	48.035	YOR089C	VPS21	96	48.035