EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YKR024C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Putative ATP-dependent RNA helicase of the DEAD-box family%3B involved in ribosomal biogenesis%3B required at post-transcriptional step for efficient retrotransposition%3B essential for growth under anaerobic conditions
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 2229 bases
Position: chrXI:485144-487372
Accession: S000001732
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YKR024C_mRNA	ResIII	PF04851.15	2.8e-07	1	1
YKR024C_mRNA	DEAD	PF00270.29	2.1e-41	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download YKR024C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YKR024C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YKR024C	-	54	30.576	YHR065C	-	64	30.827

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YKR024C	-	84	33.384	ENSG00000125485	DDX31	79	33.231	Homo_sapiens
YKR024C	-	81	32.805	ENSAPOG00000004212	ddx31	78	32.805	Acanthochromis_polyacanthus
YKR024C	-	81	32.750	ENSAMEG00000004120	DDX31	78	32.750	Ailuropoda_melanoleuca
YKR024C	-	77	33.446	ENSACIG00000006033	ddx31	86	33.953	Amphilophus_citrinellus
YKR024C	-	61	30.998	ENSAOCG00000023183	ddx31	65	32.648	Amphiprion_ocellaris
YKR024C	-	84	32.972	ENSAPLG00000016396	DDX31	86	32.972	Anas_platyrhynchos
YKR024C	-	92	32.263	ENSANAG00000035120	DDX31	78	33.863	Aotus_nancymaae
YKR024C	-	85	33.134	ENSACLG00000008720	ddx31	96	32.000	Astatotilapia_calliptera
YKR024C	-	92	30.598	ENSAMXG00000009673	ddx31	82	32.201	Astyanax_mexicanus
YKR024C	-	85	32.822	ENSBTAG00000003530	DDX31	84	32.822	Bos_taurus
YKR024C	-	94	31.514	ENSCJAG00000018173	DDX31	83	33.226	Callithrix_jacchus
YKR024C	-	80	33.118	ENSCAFG00020024548	DDX31	83	33.118	Canis_lupus_dingo
YKR024C	-	85	32.669	ENSCHIG00000020011	DDX31	81	32.515	Capra_hircus
YKR024C	-	84	32.407	ENSTSYG00000009182	DDX31	80	32.407	Carlito_syrichta
YKR024C	-	79	32.348	ENSCAPG00000015227	DDX31	77	32.348	Cavia_aperea
YKR024C	-	79	33.333	ENSCPOG00000014243	DDX31	75	33.498	Cavia_porcellus
YKR024C	-	94	31.651	ENSCCAG00000025989	DDX31	79	33.127	Cebus_capucinus
YKR024C	-	93	30.727	ENSCATG00000038462	DDX31	74	32.899	Cercocebus_atys
YKR024C	-	84	33.023	ENSCLAG00000008431	DDX31	85	33.023	Chinchilla_lanigera
YKR024C	-	90	32.040	ENSCSAG00000014953	DDX31	75	33.821	Chlorocebus_sabaeus
YKR024C	-	94	30.261	ENSCHOG00000001526	DDX31	82	31.902	Choloepus_hoffmanni
YKR024C	-	75	31.882	ENSCPBG00000021215	DDX31	91	31.615	Chrysemys_picta_bellii
YKR024C	-	80	33.993	ENSCING00000009272	-	87	33.993	Ciona_intestinalis
YKR024C	-	74	36.412	ENSCSAVG00000004227	-	94	36.412	Ciona_savignyi
YKR024C	-	96	31.367	ENSCANG00000036241	DDX31	99	30.451	Colobus_angolensis_palliatus
YKR024C	-	95	31.687	ENSCGRG00001014191	Ddx31	93	31.687	Cricetulus_griseus_chok1gshd
YKR024C	-	95	31.687	ENSCGRG00000008396	Ddx31	93	31.687	Cricetulus_griseus_crigri
YKR024C	-	78	33.109	ENSCSEG00000008541	ddx31	71	33.109	Cynoglossus_semilaevis
YKR024C	-	85	31.692	ENSCVAG00000000189	ddx31	95	31.692	Cyprinodon_variegatus
YKR024C	-	95	30.405	ENSDARG00000035507	ddx31	93	30.315	Danio_rerio
YKR024C	-	99	30.390	ENSDNOG00000009865	DDX31	97	30.390	Dasypus_novemcinctus
YKR024C	-	85	33.385	ENSDORG00000005071	Ddx31	86	33.385	Dipodomys_ordii
YKR024C	-	75	32.437	FBgn0027602	CG8611	53	35.821	Drosophila_melanogaster
YKR024C	-	79	31.875	ENSETEG00000007908	DDX31	61	35.149	Echinops_telfairi
YKR024C	-	84	33.282	ENSEASG00005009845	DDX31	93	30.526	Equus_asinus_asinus
YKR024C	-	84	33.282	ENSECAG00000005146	DDX31	93	30.526	Equus_caballus
YKR024C	-	77	34.179	ENSEEUG00000012785	DDX31	72	34.179	Erinaceus_europaeus
YKR024C	-	89	33.038	ENSELUG00000001052	ddx31	79	33.538	Esox_lucius
YKR024C	-	77	32.943	ENSFCAG00000007106	DDX31	76	32.943	Felis_catus
YKR024C	-	83	33.071	ENSFALG00000001468	DDX31	83	33.071	Ficedula_albicollis
YKR024C	-	93	31.345	ENSFDAG00000007853	DDX31	84	32.868	Fukomys_damarensis
YKR024C	-	80	32.790	ENSFHEG00000009047	ddx31	81	31.784	Fundulus_heteroclitus
YKR024C	-	60	34.904	ENSGALG00000041473	DDX31	85	34.904	Gallus_gallus
YKR024C	-	85	32.273	ENSGAFG00000009888	ddx31	83	32.273	Gambusia_affinis
YKR024C	-	94	31.354	ENSGAGG00000012482	DDX31	77	32.091	Gopherus_agassizii
YKR024C	-	93	31.912	ENSGGOG00000008314	DDX31	78	32.006	Gorilla_gorilla
YKR024C	-	85	32.836	ENSHBUG00000019539	ddx31	69	32.836	Haplochromis_burtoni
YKR024C	-	81	33.173	ENSHGLG00000013194	DDX31	81	32.682	Heterocephalus_glaber_female
YKR024C	-	73	32.504	ENSHGLG00100016868	DDX31	85	32.504	Heterocephalus_glaber_male
YKR024C	-	80	32.558	ENSHCOG00000020998	ddx31	79	32.558	Hippocampus_comes
YKR024C	-	97	31.707	ENSIPUG00000020592	ddx31	79	33.439	Ictalurus_punctatus
YKR024C	-	85	32.006	ENSSTOG00000007985	DDX31	87	32.006	Ictidomys_tridecemlineatus
YKR024C	-	81	32.947	ENSJJAG00000018491	Ddx31	80	32.947	Jaculus_jaculus
YKR024C	-	72	32.911	ENSKMAG00000006165	ddx31	98	31.980	Kryptolebias_marmoratus
YKR024C	-	83	34.069	ENSLBEG00000008550	ddx31	73	34.868	Labrus_bergylta
YKR024C	-	74	32.062	ENSLACG00000008136	DDX31	81	34.008	Latimeria_chalumnae
YKR024C	-	98	30.157	ENSLOCG00000005630	ddx31	95	30.157	Lepisosteus_oculatus
YKR024C	-	85	32.572	ENSLAFG00000015379	DDX31	86	32.572	Loxodonta_africana
YKR024C	-	93	31.724	ENSMFAG00000036342	DDX31	65	33.876	Macaca_fascicularis
YKR024C	-	92	31.520	ENSMMUG00000004590	DDX31	79	33.591	Macaca_mulatta
YKR024C	-	93	31.724	ENSMNEG00000045539	DDX31	78	34.247	Macaca_nemestrina
YKR024C	-	93	31.724	ENSMLEG00000032393	DDX31	65	33.876	Mandrillus_leucophaeus
YKR024C	-	78	32.264	ENSMAMG00000019252	ddx31	76	31.757	Mastacembelus_armatus
YKR024C	-	85	32.615	ENSMZEG00005020937	ddx31	96	32.615	Maylandia_zebra
YKR024C	-	83	33.543	ENSMGAG00000006002	DDX31	82	33.543	Meleagris_gallopavo
YKR024C	-	90	32.138	ENSMAUG00000016824	Ddx31	99	32.138	Mesocricetus_auratus
YKR024C	-	94	31.020	ENSMICG00000010581	DDX31	79	32.562	Microcebus_murinus
YKR024C	-	84	34.119	ENSMOCG00000020938	Ddx31	83	34.073	Microtus_ochrogaster
YKR024C	-	73	32.021	ENSMMOG00000020996	ddx31	88	32.021	Mola_mola
YKR024C	-	99	31.291	ENSMODG00000012555	DDX31	95	31.291	Monodelphis_domestica
YKR024C	-	79	33.223	ENSMALG00000002614	ddx31	73	33.223	Monopterus_albus
YKR024C	-	90	32.323	MGP_CAROLIEiJ_G0023360	Ddx31	81	33.603	Mus_caroli
YKR024C	-	91	31.805	ENSMUSG00000026806	Ddx31	81	33.603	Mus_musculus
YKR024C	-	92	31.356	MGP_PahariEiJ_G0024817	Ddx31	84	32.707	Mus_pahari
YKR024C	-	91	31.805	MGP_SPRETEiJ_G0024277	Ddx31	81	33.603	Mus_spretus
YKR024C	-	90	32.382	ENSMPUG00000012522	DDX31	66	34.029	Mustela_putorius_furo
YKR024C	-	96	32.016	ENSMLUG00000011507	DDX31	76	33.914	Myotis_lucifugus
YKR024C	-	89	33.721	ENSNGAG00000020928	Ddx31	80	35.266	Nannospalax_galili
YKR024C	-	81	34.295	ENSNBRG00000024320	ddx31	91	34.295	Neolamprologus_brichardi
YKR024C	-	90	32.230	ENSNLEG00000012870	DDX31	65	34.202	Nomascus_leucogenys
YKR024C	-	82	31.905	ENSMEUG00000008760	DDX31	79	31.905	Notamacropus_eugenii
YKR024C	-	59	39.720	ENSOPRG00000004477	-	69	39.720	Ochotona_princeps
YKR024C	-	80	31.494	ENSODEG00000015685	DDX31	83	31.452	Octodon_degus
YKR024C	-	80	33.604	ENSONIG00000000711	ddx31	87	32.477	Oreochromis_niloticus
YKR024C	-	80	33.225	ENSOANG00000005047	DDX31	88	33.172	Ornithorhynchus_anatinus
YKR024C	-	85	32.268	ENSOCUG00000008739	DDX31	87	32.268	Oryctolagus_cuniculus
YKR024C	-	80	32.680	ENSORLG00000016628	ddx31	72	32.492	Oryzias_latipes
YKR024C	-	80	32.680	ENSORLG00020017897	ddx31	72	32.650	Oryzias_latipes_hni
YKR024C	-	82	33.013	ENSOMEG00000004600	ddx31	68	32.960	Oryzias_melastigma
YKR024C	-	91	30.737	ENSOGAG00000004072	DDX31	89	32.376	Otolemur_garnettii
YKR024C	-	85	32.822	ENSOARG00000005879	DDX31	84	32.975	Ovis_aries
YKR024C	-	93	32.099	ENSPPAG00000027761	DDX31	78	31.853	Pan_paniscus
YKR024C	-	93	32.099	ENSPTRG00000021500	DDX31	78	31.853	Pan_troglodytes
YKR024C	-	89	32.179	ENSPANG00000025987	DDX31	65	33.876	Papio_anubis
YKR024C	-	90	30.868	ENSPSIG00000006722	DDX31	81	31.797	Pelodiscus_sinensis
YKR024C	-	82	32.536	ENSPMGG00000020721	ddx31	83	32.536	Periophthalmus_magnuspinnatus
YKR024C	-	82	33.601	ENSPEMG00000014798	Ddx31	82	33.601	Peromyscus_maniculatus_bairdii
YKR024C	-	85	32.719	ENSPCIG00000019742	DDX31	84	33.231	Phascolarctos_cinereus
YKR024C	-	80	33.113	ENSPFOG00000000144	ddx31	75	33.662	Poecilia_formosa
YKR024C	-	58	33.784	ENSPLAG00000019817	ddx31	75	33.784	Poecilia_latipinna
YKR024C	-	80	33.113	ENSPMEG00000018263	ddx31	75	33.443	Poecilia_mexicana
YKR024C	-	81	32.953	ENSPREG00000002870	-	75	33.278	Poecilia_reticulata
YKR024C	-	79	33.388	ENSPPYG00000019713	DDX31	62	34.197	Pongo_abelii
YKR024C	-	70	33.519	ENSPCAG00000004249	DDX31	58	33.519	Procavia_capensis
YKR024C	-	91	30.791	ENSPCOG00000010431	DDX31	68	32.528	Propithecus_coquereli
YKR024C	-	84	32.093	ENSPVAG00000002050	DDX31	71	31.938	Pteropus_vampyrus
YKR024C	-	85	32.148	ENSPNYG00000013810	ddx31	94	31.994	Pundamilia_nyererei
YKR024C	-	88	33.036	ENSPNAG00000022187	ddx31	78	34.281	Pygocentrus_nattereri
YKR024C	-	92	31.206	ENSRNOG00000013040	Ddx31	94	31.206	Rattus_norvegicus
YKR024C	-	92	30.866	ENSRBIG00000042353	DDX31	65	32.520	Rhinopithecus_bieti
YKR024C	-	93	31.667	ENSRROG00000044427	DDX31	79	33.127	Rhinopithecus_roxellana
YKR024C	-	94	31.319	ENSSBOG00000021668	DDX31	79	33.127	Saimiri_boliviensis_boliviensis
YKR024C	-	95	32.429	ENSSHAG00000018804	DDX31	94	32.447	Sarcophilus_harrisii
YKR024C	-	92	32.525	ENSSFOG00015012974	ddx31	80	32.923	Scleropages_formosus
YKR024C	-	84	32.037	ENSSMAG00000017673	ddx31	71	32.037	Scophthalmus_maximus
YKR024C	-	75	31.053	ENSSDUG00000011751	ddx31	94	30.769	Seriola_dumerili
YKR024C	-	54	32.857	ENSSLDG00000005425	-	78	32.857	Seriola_lalandi_dorsalis
YKR024C	-	85	34.094	ENSSPUG00000016144	DDX31	88	34.094	Sphenodon_punctatus
YKR024C	-	85	32.719	ENSSSCG00000005729	DDX31	81	32.412	Sus_scrofa
YKR024C	-	82	32.591	ENSTGUG00000005142	DDX31	91	32.441	Taeniopygia_guttata
YKR024C	-	62	32.421	ENSTRUG00000013699	ddx31	91	32.421	Takifugu_rubripes
YKR024C	-	83	31.410	ENSTNIG00000006039	ddx31	94	31.045	Tetraodon_nigroviridis
YKR024C	-	72	30.851	ENSTBEG00000013672	DDX31	73	33.264	Tupaia_belangeri
YKR024C	-	84	32.713	ENSTTRG00000014093	DDX31	71	32.817	Tursiops_truncatus
YKR024C	-	91	30.056	ENSUAMG00000024811	DDX31	75	31.638	Ursus_americanus
YKR024C	-	84	31.853	ENSUMAG00000016669	DDX31	90	31.853	Ursus_maritimus
YKR024C	-	80	33.118	ENSVVUG00000028399	DDX31	83	33.118	Vulpes_vulpes
YKR024C	-	89	31.693	ENSXETG00000006258	ddx31	91	32.656	Xenopus_tropicalis
YKR024C	-	80	30.083	ENSXCOG00000018753	ddx31	99	30.083	Xiphophorus_couchianus
YKR024C	-	80	32.616	ENSXMAG00000006678	ddx31	79	32.949	Xiphophorus_maculatus