EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YKR059W (Gene tree)
Gene ID: -
Gene Symbol: TIF1
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1188
Position: chrXI:554987-556174
Accession: S000001767
RBP type: canonical RBP
Summary: Translation initiation factor eIF4A%3B DEA(D/H)-box RNA helicase that couples ATPase activity to RNA binding and unwinding%3B forms a dumbbell structure of two compact domains connected by a linker%3B interacts with eIF4G%3B protein abundance increases in response to DNA replication stress%3B TIF1 has a paralog%2C TIF2%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YKR059W_mRNA	ResIII	PF04851.15	3.3e-08	1	1
YKR059W_mRNA	DEAD	PF00270.29	2.4e-44	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download YKR059W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YKR059W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YKR059W	TIF1	98	37.811	YOR046C	DBP5	83	37.811
YKR059W	TIF1	89	31.522	YGL171W	-	65	31.522
YKR059W	TIF1	90	31.267	YMR290C	-	73	30.458
YKR059W	TIF1	85	30.435	YDR243C	-	62	30.435
YKR059W	TIF1	94	31.552	YPL119C	DBP1	68	30.952
YKR059W	TIF1	94	31.367	YHR065C	-	74	31.367
YKR059W	TIF1	92	32.718	YHR169W	-	87	32.718
YKR059W	TIF1	93	31.959	YOR204W	DED1	64	31.959
YKR059W	TIF1	82	32.479	YFL002C	-	58	32.386
YKR059W	TIF1	100	100.000	YJL138C	TIF2	100	100.000
YKR059W	TIF1	94	35.509	YDL084W	-	86	35.509
YKR059W	TIF1	87	33.051	YGL078C	-	63	32.432
YKR059W	TIF1	95	56.728	YDR021W	-	95	56.728
YKR059W	TIF1	88	30.548	YDR194C	-	57	30.233
YKR059W	TIF1	93	43.478	YDL160C	-	72	43.478
YKR059W	TIF1	94	32.808	YNL112W	-	70	32.808

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YKR059W	TIF1	94	64.516	ENSG00000141543	EIF4A3	91	64.516	Homo_sapiens
YKR059W	TIF1	94	64.247	ENSAPOG00000017112	eif4a3	92	64.247	Acanthochromis_polyacanthus
YKR059W	TIF1	92	64.932	ENSAMEG00000015194	EIF4A3	90	64.932	Ailuropoda_melanoleuca
YKR059W	TIF1	94	64.247	ENSACIG00000009719	eif4a3	92	64.247	Amphilophus_citrinellus
YKR059W	TIF1	94	64.247	ENSAOCG00000021655	eif4a3	92	64.247	Amphiprion_ocellaris
YKR059W	TIF1	94	64.247	ENSAPEG00000018658	eif4a3	92	64.247	Amphiprion_percula
YKR059W	TIF1	94	64.247	ENSATEG00000014793	eif4a3	92	64.247	Anabas_testudineus
YKR059W	TIF1	88	64.571	ENSAPLG00000014717	EIF4A3	99	64.571	Anas_platyrhynchos
YKR059W	TIF1	92	65.205	ENSACAG00000014384	EIF4A3	85	65.205	Anolis_carolinensis
YKR059W	TIF1	94	64.516	ENSANAG00000005557	EIF4A3	91	64.516	Aotus_nancymaae
YKR059W	TIF1	94	64.247	ENSACLG00000004174	eif4a3	92	64.247	Astatotilapia_calliptera
YKR059W	TIF1	94	64.247	ENSAMXG00000020882	eif4a3	93	64.208	Astyanax_mexicanus
YKR059W	TIF1	94	64.516	ENSBTAG00000016023	EIF4A3	91	64.516	Bos_taurus
YKR059W	TIF1	95	63.032	WBGene00018007	F33D11.10	94	63.032	Caenorhabditis_elegans
YKR059W	TIF1	95	63.032	WBGene00022029	Y65B4A.6	100	62.724	Caenorhabditis_elegans
YKR059W	TIF1	94	64.516	ENSCJAG00000048589	-	91	64.516	Callithrix_jacchus
YKR059W	TIF1	93	61.957	ENSCJAG00000016777	-	90	61.957	Callithrix_jacchus
YKR059W	TIF1	94	64.516	ENSCAFG00000005614	EIF4A3	91	64.516	Canis_familiaris
YKR059W	TIF1	94	64.516	ENSCAFG00020008253	EIF4A3	91	64.516	Canis_lupus_dingo
YKR059W	TIF1	94	64.516	ENSCHIG00000024284	EIF4A3	91	64.516	Capra_hircus
YKR059W	TIF1	94	64.516	ENSTSYG00000008738	EIF4A3	91	64.516	Carlito_syrichta
YKR059W	TIF1	90	61.127	ENSCAPG00000000964	EIF4A3	92	61.127	Cavia_aperea
YKR059W	TIF1	94	64.516	ENSCPOG00000006485	EIF4A3	91	64.516	Cavia_porcellus
YKR059W	TIF1	94	64.516	ENSCCAG00000036144	EIF4A3	91	64.516	Cebus_capucinus
YKR059W	TIF1	98	58.098	ENSCATG00000039629	-	95	58.355	Cercocebus_atys
YKR059W	TIF1	94	64.516	ENSCATG00000039262	-	91	64.516	Cercocebus_atys
YKR059W	TIF1	94	64.516	ENSCLAG00000014502	EIF4A3	91	64.516	Chinchilla_lanigera
YKR059W	TIF1	84	63.253	ENSCPBG00000017801	EIF4A3	98	63.253	Chrysemys_picta_bellii
YKR059W	TIF1	95	63.032	ENSCING00000007818	-	92	63.032	Ciona_intestinalis
YKR059W	TIF1	93	63.415	ENSCSAVG00000009920	-	100	63.415	Ciona_savignyi
YKR059W	TIF1	94	55.526	ENSCANG00000043503	EIF4A3	89	54.987	Colobus_angolensis_palliatus
YKR059W	TIF1	94	53.495	ENSCGRG00001018048	-	91	53.495	Cricetulus_griseus_chok1gshd
YKR059W	TIF1	94	64.516	ENSCGRG00001022918	-	91	64.516	Cricetulus_griseus_chok1gshd
YKR059W	TIF1	89	64.689	ENSCGRG00000017119	-	100	64.689	Cricetulus_griseus_crigri
YKR059W	TIF1	94	53.495	ENSCGRG00000001983	-	91	53.495	Cricetulus_griseus_crigri
YKR059W	TIF1	94	64.516	ENSCSEG00000021058	eif4a3	92	64.516	Cynoglossus_semilaevis
YKR059W	TIF1	94	64.516	ENSCVAG00000006864	eif4a3	92	64.516	Cyprinodon_variegatus
YKR059W	TIF1	94	63.978	ENSDARG00000102978	eif4a3	92	63.978	Danio_rerio
YKR059W	TIF1	90	64.525	ENSDNOG00000009027	EIF4A3	97	64.525	Dasypus_novemcinctus
YKR059W	TIF1	94	64.516	ENSDORG00000013028	-	91	64.516	Dipodomys_ordii
YKR059W	TIF1	98	62.564	FBgn0037573	CG7483	98	62.564	Drosophila_melanogaster
YKR059W	TIF1	94	64.516	ENSEBUG00000003713	eif4a3	86	64.516	Eptatretus_burgeri
YKR059W	TIF1	94	64.516	ENSEASG00005005107	EIF4A3	91	64.516	Equus_asinus_asinus
YKR059W	TIF1	94	64.516	ENSECAG00000015925	EIF4A3	91	64.516	Equus_caballus
YKR059W	TIF1	94	59.409	ENSEEUG00000006008	EIF4A3	91	59.409	Erinaceus_europaeus
YKR059W	TIF1	94	63.978	ENSELUG00000018528	eif4a3	92	63.978	Esox_lucius
YKR059W	TIF1	94	64.516	ENSFCAG00000008246	EIF4A3	91	64.516	Felis_catus
YKR059W	TIF1	90	64.789	ENSFALG00000002343	EIF4A3	100	64.789	Ficedula_albicollis
YKR059W	TIF1	94	64.516	ENSFDAG00000020774	EIF4A3	91	64.516	Fukomys_damarensis
YKR059W	TIF1	92	64.932	ENSGMOG00000001560	eif4a3	93	64.932	Gadus_morhua
YKR059W	TIF1	94	64.516	ENSGALG00000008530	EIF4A3	90	64.516	Gallus_gallus
YKR059W	TIF1	94	64.247	ENSGAFG00000013487	eif4a3	92	64.247	Gambusia_affinis
YKR059W	TIF1	94	64.247	ENSGACG00000020004	eif4a3	92	64.932	Gasterosteus_aculeatus
YKR059W	TIF1	94	64.247	ENSGAGG00000016434	EIF4A3	92	64.247	Gopherus_agassizii
YKR059W	TIF1	94	64.516	ENSGGOG00000012918	EIF4A3	91	64.516	Gorilla_gorilla
YKR059W	TIF1	94	64.247	ENSHBUG00000014892	eif4a3	92	64.247	Haplochromis_burtoni
YKR059W	TIF1	94	64.516	ENSHGLG00000004635	EIF4A3	91	64.516	Heterocephalus_glaber_female
YKR059W	TIF1	94	64.516	ENSHGLG00100006837	EIF4A3	91	64.516	Heterocephalus_glaber_male
YKR059W	TIF1	92	55.348	ENSHCOG00000011335	eif4a3	80	55.348	Hippocampus_comes
YKR059W	TIF1	94	64.247	ENSIPUG00000021785	eif4a3	92	64.247	Ictalurus_punctatus
YKR059W	TIF1	94	64.516	ENSSTOG00000002664	EIF4A3	91	64.516	Ictidomys_tridecemlineatus
YKR059W	TIF1	94	64.247	ENSJJAG00000016503	-	91	64.247	Jaculus_jaculus
YKR059W	TIF1	94	64.516	ENSJJAG00000015870	-	91	64.516	Jaculus_jaculus
YKR059W	TIF1	92	61.918	ENSKMAG00000010113	eif4a3	85	61.918	Kryptolebias_marmoratus
YKR059W	TIF1	92	63.636	ENSLBEG00000020356	eif4a3	97	63.636	Labrus_bergylta
YKR059W	TIF1	94	64.516	ENSLACG00000000108	EIF4A3	92	64.516	Latimeria_chalumnae
YKR059W	TIF1	94	64.247	ENSLOCG00000015796	eif4a3	90	64.247	Lepisosteus_oculatus
YKR059W	TIF1	94	64.516	ENSLAFG00000015628	EIF4A3	91	64.516	Loxodonta_africana
YKR059W	TIF1	94	59.299	ENSMFAG00000018955	-	91	59.299	Macaca_fascicularis
YKR059W	TIF1	94	64.516	ENSMFAG00000043778	EIF4A3	91	64.516	Macaca_fascicularis
YKR059W	TIF1	94	64.247	ENSMMUG00000009590	EIF4A3	90	64.247	Macaca_mulatta
YKR059W	TIF1	94	58.760	ENSMMUG00000007050	-	92	58.760	Macaca_mulatta
YKR059W	TIF1	92	65.205	ENSMNEG00000039333	-	85	65.205	Macaca_nemestrina
YKR059W	TIF1	94	59.569	ENSMNEG00000038447	-	92	59.569	Macaca_nemestrina
YKR059W	TIF1	89	64.689	ENSMLEG00000032948	EIF4A3	100	64.689	Mandrillus_leucophaeus
YKR059W	TIF1	94	64.247	ENSMAMG00000017369	eif4a3	92	64.247	Mastacembelus_armatus
YKR059W	TIF1	94	59.409	ENSMZEG00005015371	eif4a3	91	58.602	Maylandia_zebra
YKR059W	TIF1	94	64.247	ENSMZEG00005000259	-	92	64.247	Maylandia_zebra
YKR059W	TIF1	90	64.789	ENSMGAG00000007270	EIF4A3	100	64.789	Meleagris_gallopavo
YKR059W	TIF1	94	64.516	ENSMAUG00000012955	-	91	64.516	Mesocricetus_auratus
YKR059W	TIF1	94	60.638	ENSMICG00000009136	-	90	60.638	Microcebus_murinus
YKR059W	TIF1	94	62.366	ENSMICG00000044243	-	92	62.366	Microcebus_murinus
YKR059W	TIF1	94	63.441	ENSMICG00000034467	-	92	63.441	Microcebus_murinus
YKR059W	TIF1	94	62.097	ENSMICG00000045127	-	92	62.097	Microcebus_murinus
YKR059W	TIF1	94	61.559	ENSMICG00000041585	-	90	61.559	Microcebus_murinus
YKR059W	TIF1	94	59.569	ENSMICG00000011946	-	90	59.569	Microcebus_murinus
YKR059W	TIF1	94	61.735	ENSMOCG00000017297	-	89	63.102	Microtus_ochrogaster
YKR059W	TIF1	95	60.000	ENSMMOG00000018352	eif4a3	85	60.377	Mola_mola
YKR059W	TIF1	94	62.903	ENSMODG00000003697	-	91	62.903	Monodelphis_domestica
YKR059W	TIF1	94	64.516	ENSMODG00000002190	-	91	64.516	Monodelphis_domestica
YKR059W	TIF1	94	63.978	ENSMALG00000016324	eif4a3	92	63.978	Monopterus_albus
YKR059W	TIF1	94	64.516	MGP_CAROLIEiJ_G0017495	-	91	64.516	Mus_caroli
YKR059W	TIF1	94	64.247	ENSMUSG00000025580	Eif4a3	91	64.247	Mus_musculus
YKR059W	TIF1	99	61.832	ENSMUSG00000107906	Gm5580	95	61.832	Mus_musculus
YKR059W	TIF1	94	63.441	ENSMUSG00000094973	Gm8994	91	63.441	Mus_musculus
YKR059W	TIF1	94	64.516	MGP_PahariEiJ_G0018622	-	91	64.516	Mus_pahari
YKR059W	TIF1	94	64.516	MGP_SPRETEiJ_G0018339	Eif4a3	91	64.516	Mus_spretus
YKR059W	TIF1	90	64.789	ENSMPUG00000012216	EIF4A3	84	64.789	Mustela_putorius_furo
YKR059W	TIF1	87	62.609	ENSMLUG00000009585	-	100	62.609	Myotis_lucifugus
YKR059W	TIF1	94	63.978	ENSMLUG00000012233	-	91	63.978	Myotis_lucifugus
YKR059W	TIF1	90	57.423	ENSMLUG00000024690	-	100	57.423	Myotis_lucifugus
YKR059W	TIF1	94	64.516	ENSNGAG00000003189	-	91	64.516	Nannospalax_galili
YKR059W	TIF1	94	64.247	ENSNBRG00000021671	eif4a3	92	64.247	Neolamprologus_brichardi
YKR059W	TIF1	94	64.516	ENSNLEG00000015595	EIF4A3	91	64.516	Nomascus_leucogenys
YKR059W	TIF1	94	55.914	ENSMEUG00000008521	EIF4A3	90	55.914	Notamacropus_eugenii
YKR059W	TIF1	94	64.516	ENSODEG00000010300	EIF4A3	91	64.516	Octodon_degus
YKR059W	TIF1	94	64.247	ENSONIG00000019828	eif4a3	92	64.247	Oreochromis_niloticus
YKR059W	TIF1	64	62.353	ENSOANG00000000334	EIF4A3	88	62.948	Ornithorhynchus_anatinus
YKR059W	TIF1	94	64.516	ENSORLG00000018405	eif4a3	92	64.516	Oryzias_latipes
YKR059W	TIF1	94	64.516	ENSOMEG00000007998	eif4a3	92	64.516	Oryzias_melastigma
YKR059W	TIF1	94	64.516	ENSOGAG00000007495	-	91	64.516	Otolemur_garnettii
YKR059W	TIF1	94	63.978	ENSOGAG00000026206	-	91	63.978	Otolemur_garnettii
YKR059W	TIF1	94	64.516	ENSOARG00000002169	-	91	64.516	Ovis_aries
YKR059W	TIF1	94	61.828	ENSOARG00000005144	-	91	61.828	Ovis_aries
YKR059W	TIF1	84	60.661	ENSPPAG00000021017	-	88	60.976	Pan_paniscus
YKR059W	TIF1	94	64.516	ENSPPRG00000021873	EIF4A3	91	64.516	Panthera_pardus
YKR059W	TIF1	91	64.167	ENSPTIG00000009646	EIF4A3	99	64.167	Panthera_tigris_altaica
YKR059W	TIF1	94	62.735	ENSPTRG00000009737	EIF4A3	91	62.735	Pan_troglodytes
YKR059W	TIF1	94	64.516	ENSPANG00000019672	-	91	64.516	Papio_anubis
YKR059W	TIF1	94	59.299	ENSPANG00000021217	-	90	59.299	Papio_anubis
YKR059W	TIF1	94	64.785	ENSPKIG00000016912	eif4a3	92	64.785	Paramormyrops_kingsleyae
YKR059W	TIF1	70	64.158	ENSPSIG00000004036	EIF4A3	100	64.158	Pelodiscus_sinensis
YKR059W	TIF1	94	64.516	ENSPEMG00000009441	-	91	64.516	Peromyscus_maniculatus_bairdii
YKR059W	TIF1	97	61.399	ENSPCIG00000005856	-	98	64.706	Phascolarctos_cinereus
YKR059W	TIF1	94	64.247	ENSPFOG00000009300	eif4a3	89	64.247	Poecilia_formosa
YKR059W	TIF1	94	64.247	ENSPLAG00000007436	eif4a3	92	64.247	Poecilia_latipinna
YKR059W	TIF1	94	64.247	ENSPMEG00000008078	eif4a3	92	64.247	Poecilia_mexicana
YKR059W	TIF1	94	64.247	ENSPREG00000006006	eif4a3	92	64.247	Poecilia_reticulata
YKR059W	TIF1	94	64.516	ENSPPYG00000008714	EIF4A3	91	64.516	Pongo_abelii
YKR059W	TIF1	94	52.151	ENSPCAG00000002931	EIF4A3	90	52.151	Procavia_capensis
YKR059W	TIF1	94	64.516	ENSPCOG00000020004	EIF4A3	91	64.516	Propithecus_coquereli
YKR059W	TIF1	94	64.516	ENSPVAG00000003627	EIF4A3	91	64.516	Pteropus_vampyrus
YKR059W	TIF1	94	64.247	ENSPNYG00000016865	eif4a3	92	64.247	Pundamilia_nyererei
YKR059W	TIF1	94	64.516	ENSPNAG00000008053	eif4a3	92	64.516	Pygocentrus_nattereri
YKR059W	TIF1	94	64.516	ENSRNOG00000045791	Eif4a3	91	64.516	Rattus_norvegicus
YKR059W	TIF1	94	64.516	ENSRBIG00000029705	EIF4A3	91	64.516	Rhinopithecus_bieti
YKR059W	TIF1	94	64.516	ENSRROG00000042322	EIF4A3	91	64.516	Rhinopithecus_roxellana
YKR059W	TIF1	94	64.516	ENSSBOG00000024694	EIF4A3	91	64.516	Saimiri_boliviensis_boliviensis
YKR059W	TIF1	94	64.247	ENSSHAG00000005751	-	91	64.247	Sarcophilus_harrisii
YKR059W	TIF1	95	64.096	ENSSHAG00000004638	-	83	64.516	Sarcophilus_harrisii
YKR059W	TIF1	94	64.516	ENSSFOG00015022017	eif4a3	92	64.516	Scleropages_formosus
YKR059W	TIF1	94	63.978	ENSSFOG00015004896	-	92	63.978	Scleropages_formosus
YKR059W	TIF1	94	63.978	ENSSMAG00000021078	eif4a3	92	63.978	Scophthalmus_maximus
YKR059W	TIF1	94	64.247	ENSSDUG00000021512	eif4a3	92	64.247	Seriola_dumerili
YKR059W	TIF1	83	64.545	ENSSLDG00000010112	eif4a3	83	64.815	Seriola_lalandi_dorsalis
YKR059W	TIF1	56	62.946	ENSSARG00000009017	-	100	62.946	Sorex_araneus
YKR059W	TIF1	94	64.247	ENSSPUG00000013935	EIF4A3	91	64.247	Sphenodon_punctatus
YKR059W	TIF1	92	64.932	ENSSPAG00000017012	eif4a3	89	64.932	Stegastes_partitus
YKR059W	TIF1	94	64.516	ENSSSCG00000017155	EIF4A3	91	64.516	Sus_scrofa
YKR059W	TIF1	83	63.939	ENSTGUG00000002132	EIF4A3	100	63.939	Taeniopygia_guttata
YKR059W	TIF1	94	64.247	ENSTRUG00000011543	eif4a3	92	64.247	Takifugu_rubripes
YKR059W	TIF1	94	64.075	ENSTNIG00000002924	eif4a3	90	64.075	Tetraodon_nigroviridis
YKR059W	TIF1	89	58.192	ENSTTRG00000000514	EIF4A3	100	58.192	Tursiops_truncatus
YKR059W	TIF1	94	64.516	ENSUAMG00000027453	EIF4A3	91	64.516	Ursus_americanus
YKR059W	TIF1	91	63.788	ENSUMAG00000014617	EIF4A3	99	64.205	Ursus_maritimus
YKR059W	TIF1	94	64.516	ENSVVUG00000017984	EIF4A3	91	64.516	Vulpes_vulpes
YKR059W	TIF1	94	63.978	ENSXETG00000013720	eif4a3	90	63.978	Xenopus_tropicalis
YKR059W	TIF1	92	64.932	ENSXCOG00000010824	eif4a3	89	64.932	Xiphophorus_couchianus
YKR059W	TIF1	94	64.247	ENSXMAG00000014111	eif4a3	92	64.247	Xiphophorus_maculatus