EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YKR081C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1035
Position: chrXI:591506-592540
Accession: S000001789
RBP type: canonical RBP
Summary: Essential protein involved in rRNA maturation and ribosomal assembly%3B involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit%3B interacts with ribosomal protein L11%3B localizes predominantly to the nucleolus%3B constituent of 66S pre-ribosomal particles

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YKR081C_mRNA	Brix	PF04427.18	7.6e-40	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download YKR081C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YKR081C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YKR081C	-	85	46.259	ENSG00000197498	RPF2	100	40.265	Homo_sapiens
YKR081C	-	85	44.595	ENSAPOG00000005714	rpf2	91	44.595	Acanthochromis_polyacanthus
YKR081C	-	85	44.898	ENSAMEG00000015753	RPF2	92	44.898	Ailuropoda_melanoleuca
YKR081C	-	85	44.595	ENSAOCG00000005173	rpf2	91	44.595	Amphiprion_ocellaris
YKR081C	-	85	44.932	ENSAPEG00000004003	rpf2	91	44.932	Amphiprion_percula
YKR081C	-	88	43.421	ENSATEG00000012818	rpf2	95	43.421	Anabas_testudineus
YKR081C	-	81	43.571	ENSAPLG00000008812	RPF2	98	43.571	Anas_platyrhynchos
YKR081C	-	88	42.904	ENSACAG00000011270	RPF2	94	42.904	Anolis_carolinensis
YKR081C	-	81	36.299	ENSANAG00000033736	-	98	37.154	Aotus_nancymaae
YKR081C	-	85	37.671	ENSANAG00000025459	-	89	37.671	Aotus_nancymaae
YKR081C	-	85	44.558	ENSANAG00000026549	-	92	44.558	Aotus_nancymaae
YKR081C	-	85	35.374	ENSANAG00000021067	-	90	35.374	Aotus_nancymaae
YKR081C	-	85	43.197	ENSANAG00000034834	-	92	43.197	Aotus_nancymaae
YKR081C	-	88	41.254	ENSAMXG00000035201	rpf2	94	41.254	Astyanax_mexicanus
YKR081C	-	85	45.918	ENSBTAG00000016584	RPF2	92	45.918	Bos_taurus
YKR081C	-	85	37.755	WBGene00021830	Y54E10A.10	95	37.755	Caenorhabditis_elegans
YKR081C	-	85	46.259	ENSCJAG00000038330	RPF2	92	46.259	Callithrix_jacchus
YKR081C	-	85	45.238	ENSCAFG00000003918	RPF2	92	45.238	Canis_familiaris
YKR081C	-	85	44.558	ENSCHIG00000022499	RPF2	92	44.558	Capra_hircus
YKR081C	-	88	45.847	ENSTSYG00000013924	RPF2	94	45.847	Carlito_syrichta
YKR081C	-	85	37.884	ENSCAPG00000014257	RPF2	90	37.884	Cavia_aperea
YKR081C	-	85	46.441	ENSCPOG00000006797	RPF2	98	42.268	Cavia_porcellus
YKR081C	-	83	35.439	ENSCCAG00000028553	-	88	35.439	Cebus_capucinus
YKR081C	-	85	44.863	ENSCCAG00000030365	-	92	44.863	Cebus_capucinus
YKR081C	-	86	37.966	ENSCCAG00000028906	-	98	37.966	Cebus_capucinus
YKR081C	-	85	45.918	ENSCCAG00000030864	-	92	45.918	Cebus_capucinus
YKR081C	-	80	37.770	ENSCATG00000029725	-	98	37.770	Cercocebus_atys
YKR081C	-	64	41.629	ENSCATG00000034352	-	80	41.629	Cercocebus_atys
YKR081C	-	68	37.021	ENSCLAG00000013252	-	83	37.021	Chinchilla_lanigera
YKR081C	-	85	45.918	ENSCLAG00000010393	-	98	41.724	Chinchilla_lanigera
YKR081C	-	85	37.500	ENSCLAG00000010874	-	93	38.176	Chinchilla_lanigera
YKR081C	-	85	42.857	ENSCHOG00000005865	RPF2	92	42.857	Choloepus_hoffmanni
YKR081C	-	88	45.574	ENSCPBG00000006504	RPF2	95	45.574	Chrysemys_picta_bellii
YKR081C	-	85	37.755	ENSCING00000008090	-	92	37.755	Ciona_intestinalis
YKR081C	-	86	37.627	ENSCSAVG00000010672	-	95	37.627	Ciona_savignyi
YKR081C	-	85	45.918	ENSCANG00000030665	RPF2	92	45.918	Colobus_angolensis_palliatus
YKR081C	-	89	43.279	ENSCGRG00001007331	-	96	43.279	Cricetulus_griseus_chok1gshd
YKR081C	-	88	36.424	ENSCGRG00001005262	-	93	36.424	Cricetulus_griseus_chok1gshd
YKR081C	-	88	43.709	ENSCGRG00000006083	Rpf2	98	40.000	Cricetulus_griseus_crigri
YKR081C	-	89	42.718	ENSCSEG00000015725	rpf2	95	42.718	Cynoglossus_semilaevis
YKR081C	-	88	42.434	ENSCVAG00000001072	rpf2	95	42.434	Cyprinodon_variegatus
YKR081C	-	86	43.624	ENSDARG00000043960	rpf2	93	43.624	Danio_rerio
YKR081C	-	56	44.560	ENSDNOG00000039270	RPF2	88	44.560	Dasypus_novemcinctus
YKR081C	-	52	48.000	ENSDORG00000026915	Rpf2	96	48.000	Dipodomys_ordii
YKR081C	-	85	39.796	FBgn0038585	Non3	88	39.796	Drosophila_melanogaster
YKR081C	-	91	36.943	ENSEBUG00000003640	rpf2	90	36.943	Eptatretus_burgeri
YKR081C	-	85	44.898	ENSEASG00005006927	-	92	44.898	Equus_asinus_asinus
YKR081C	-	85	45.918	ENSECAG00000017121	RPF2	92	45.918	Equus_caballus
YKR081C	-	67	47.143	ENSEEUG00000006169	RPF2	74	47.143	Erinaceus_europaeus
YKR081C	-	85	44.407	ENSELUG00000018518	rpf2	92	44.407	Esox_lucius
YKR081C	-	85	45.918	ENSFCAG00000001527	RPF2	92	45.918	Felis_catus
YKR081C	-	88	44.408	ENSFALG00000010816	RPF2	95	44.408	Ficedula_albicollis
YKR081C	-	85	46.441	ENSFDAG00000005811	-	98	42.268	Fukomys_damarensis
YKR081C	-	81	36.331	ENSFDAG00000016721	-	98	36.331	Fukomys_damarensis
YKR081C	-	87	43.648	ENSFHEG00000011243	rpf2	94	43.648	Fundulus_heteroclitus
YKR081C	-	89	39.414	ENSGMOG00000002521	rpf2	98	39.414	Gadus_morhua
YKR081C	-	88	45.724	ENSGALG00000037087	RPF2	95	45.724	Gallus_gallus
YKR081C	-	85	43.051	ENSGAFG00000009537	rpf2	96	41.956	Gambusia_affinis
YKR081C	-	87	44.371	ENSGACG00000006507	rpf2	93	44.371	Gasterosteus_aculeatus
YKR081C	-	88	43.279	ENSGAGG00000016221	RPF2	95	43.279	Gopherus_agassizii
YKR081C	-	85	42.466	ENSGGOG00000024187	-	98	42.466	Gorilla_gorilla
YKR081C	-	85	36.824	ENSGGOG00000001469	RPF2	91	36.824	Gorilla_gorilla
YKR081C	-	89	43.182	ENSHBUG00000021805	rpf2	95	43.182	Haplochromis_burtoni
YKR081C	-	85	41.497	ENSHGLG00000012500	-	74	43.051	Heterocephalus_glaber_female
YKR081C	-	85	46.780	ENSHGLG00000001322	RPF2	98	42.612	Heterocephalus_glaber_female
YKR081C	-	85	41.638	ENSHGLG00000012697	-	97	41.638	Heterocephalus_glaber_female
YKR081C	-	85	41.638	ENSHGLG00100000462	-	97	41.638	Heterocephalus_glaber_male
YKR081C	-	85	46.780	ENSHGLG00100012131	RPF2	98	42.612	Heterocephalus_glaber_male
YKR081C	-	85	37.884	ENSHGLG00100002981	-	98	37.884	Heterocephalus_glaber_male
YKR081C	-	77	36.466	ENSHGLG00100009310	-	93	36.842	Heterocephalus_glaber_male
YKR081C	-	85	41.156	ENSHGLG00100012473	-	90	41.695	Heterocephalus_glaber_male
YKR081C	-	88	44.040	ENSHCOG00000000225	rpf2	97	42.574	Hippocampus_comes
YKR081C	-	88	39.073	ENSIPUG00000016288	rpf2	94	39.073	Ictalurus_punctatus
YKR081C	-	85	35.714	ENSSTOG00000013114	RPF2	98	34.589	Ictidomys_tridecemlineatus
YKR081C	-	88	42.244	ENSJJAG00000009092	Rpf2	98	41.379	Jaculus_jaculus
YKR081C	-	88	44.118	ENSKMAG00000014609	rpf2	95	44.118	Kryptolebias_marmoratus
YKR081C	-	85	44.898	ENSLBEG00000011907	rpf2	90	40.816	Labrus_bergylta
YKR081C	-	90	43.269	ENSLACG00000003942	RPF2	96	43.269	Latimeria_chalumnae
YKR081C	-	88	45.066	ENSLOCG00000016992	rpf2	95	45.066	Lepisosteus_oculatus
YKR081C	-	85	46.441	ENSLAFG00000018219	RPF2	92	46.441	Loxodonta_africana
YKR081C	-	80	36.594	ENSMFAG00000036119	-	98	36.594	Macaca_fascicularis
YKR081C	-	85	45.918	ENSMFAG00000000417	RPF2	92	45.918	Macaca_fascicularis
YKR081C	-	85	37.838	ENSMMUG00000042376	-	93	37.838	Macaca_mulatta
YKR081C	-	85	45.918	ENSMMUG00000021532	RPF2	100	39.823	Macaca_mulatta
YKR081C	-	85	36.824	ENSMNEG00000031683	RPF2	91	36.824	Macaca_nemestrina
YKR081C	-	85	38.776	ENSMLEG00000042472	-	93	38.776	Mandrillus_leucophaeus
YKR081C	-	89	43.137	ENSMAMG00000004267	rpf2	95	43.137	Mastacembelus_armatus
YKR081C	-	89	43.182	ENSMZEG00005015632	rpf2	95	43.182	Maylandia_zebra
YKR081C	-	88	45.395	ENSMGAG00000013429	RPF2	95	45.395	Meleagris_gallopavo
YKR081C	-	53	50.000	ENSMAUG00000005049	Rpf2	93	50.000	Mesocricetus_auratus
YKR081C	-	85	40.136	ENSMICG00000038169	-	91	40.136	Microcebus_murinus
YKR081C	-	85	46.599	ENSMICG00000032086	-	92	46.599	Microcebus_murinus
YKR081C	-	85	40.476	ENSMICG00000028979	-	92	40.476	Microcebus_murinus
YKR081C	-	87	44.333	ENSMOCG00000005634	Rpf2	98	40.345	Microtus_ochrogaster
YKR081C	-	88	39.934	ENSMMOG00000014844	rpf2	96	39.934	Mola_mola
YKR081C	-	85	46.392	ENSMODG00000017919	RPF2	92	46.392	Monodelphis_domestica
YKR081C	-	88	42.951	ENSMALG00000019046	rpf2	95	42.951	Monopterus_albus
YKR081C	-	89	44.262	MGP_CAROLIEiJ_G0015254	Rpf2	96	44.262	Mus_caroli
YKR081C	-	85	44.558	ENSMUSG00000038510	Rpf2	98	40.345	Mus_musculus
YKR081C	-	89	43.607	MGP_PahariEiJ_G0030671	Rpf2	97	41.877	Mus_pahari
YKR081C	-	85	44.898	MGP_SPRETEiJ_G0016063	Rpf2	98	40.690	Mus_spretus
YKR081C	-	85	46.259	ENSMPUG00000010183	RPF2	80	46.259	Mustela_putorius_furo
YKR081C	-	72	45.528	ENSMLUG00000005676	RPF2	92	45.528	Myotis_lucifugus
YKR081C	-	85	44.558	ENSNGAG00000009701	Rpf2	98	40.345	Nannospalax_galili
YKR081C	-	89	43.182	ENSNBRG00000011087	rpf2	95	43.182	Neolamprologus_brichardi
YKR081C	-	72	41.870	ENSNLEG00000011848	-	97	41.870	Nomascus_leucogenys
YKR081C	-	79	41.176	ENSNLEG00000033597	-	85	41.176	Nomascus_leucogenys
YKR081C	-	85	45.918	ENSNLEG00000027819	RPF2	92	45.918	Nomascus_leucogenys
YKR081C	-	84	37.716	ENSMEUG00000006421	RPF2	93	37.716	Notamacropus_eugenii
YKR081C	-	85	46.233	ENSODEG00000013529	-	98	42.268	Octodon_degus
YKR081C	-	85	44.746	ENSODEG00000019144	-	92	44.746	Octodon_degus
YKR081C	-	82	36.749	ENSODEG00000002442	-	92	36.749	Octodon_degus
YKR081C	-	85	41.017	ENSODEG00000006584	-	91	41.356	Octodon_degus
YKR081C	-	83	38.947	ENSODEG00000003531	-	99	38.811	Octodon_degus
YKR081C	-	83	36.491	ENSODEG00000006939	-	98	36.491	Octodon_degus
YKR081C	-	89	44.118	ENSONIG00000011383	rpf2	95	44.118	Oreochromis_niloticus
YKR081C	-	85	45.918	ENSOCUG00000016028	RPF2	92	45.918	Oryctolagus_cuniculus
YKR081C	-	85	44.218	ENSORLG00000015183	rpf2	91	44.218	Oryzias_latipes
YKR081C	-	85	44.218	ENSORLG00020008756	rpf2	90	44.027	Oryzias_latipes_hni
YKR081C	-	85	44.746	ENSORLG00015003841	RPF2	91	44.218	Oryzias_latipes_hsok
YKR081C	-	85	45.238	ENSOMEG00000011508	rpf2	91	45.238	Oryzias_melastigma
YKR081C	-	85	45.578	ENSOGAG00000007438	RPF2	92	45.578	Otolemur_garnettii
YKR081C	-	85	45.918	ENSOARG00000015548	-	92	45.918	Ovis_aries
YKR081C	-	85	45.918	ENSOARG00000009886	-	92	45.918	Ovis_aries
YKR081C	-	81	41.935	ENSPPAG00000032089	-	95	41.935	Pan_paniscus
YKR081C	-	85	46.259	ENSPPAG00000035622	RPF2	92	46.259	Pan_paniscus
YKR081C	-	85	45.918	ENSPPRG00000000320	-	92	45.918	Panthera_pardus
YKR081C	-	81	37.050	ENSPPRG00000008363	-	88	37.050	Panthera_pardus
YKR081C	-	85	45.918	ENSPTIG00000002060	RPF2	92	45.918	Panthera_tigris_altaica
YKR081C	-	85	46.259	ENSPTRG00000018503	RPF2	92	46.259	Pan_troglodytes
YKR081C	-	85	45.918	ENSPANG00000018834	RPF2	92	45.918	Papio_anubis
YKR081C	-	85	44.218	ENSPKIG00000019506	rpf2	92	44.218	Paramormyrops_kingsleyae
YKR081C	-	88	45.574	ENSPSIG00000014887	RPF2	95	45.574	Pelodiscus_sinensis
YKR081C	-	84	40.690	ENSPEMG00000011413	Rpf2	98	40.690	Peromyscus_maniculatus_bairdii
YKR081C	-	85	47.279	ENSPCIG00000028172	RPF2	91	47.279	Phascolarctos_cinereus
YKR081C	-	91	42.857	ENSPFOG00000003396	rpf2	96	42.857	Poecilia_formosa
YKR081C	-	91	42.857	ENSPLAG00000001226	rpf2	96	42.857	Poecilia_latipinna
YKR081C	-	91	42.857	ENSPMEG00000007781	rpf2	96	42.857	Poecilia_mexicana
YKR081C	-	91	41.640	ENSPREG00000020525	rpf2	96	41.640	Poecilia_reticulata
YKR081C	-	85	46.259	ENSPPYG00000016925	RPF2	92	46.259	Pongo_abelii
YKR081C	-	60	42.718	ENSPCAG00000002562	RPF2	79	42.718	Procavia_capensis
YKR081C	-	85	39.322	ENSPCOG00000012785	RPF2	90	39.322	Propithecus_coquereli
YKR081C	-	72	45.528	ENSPVAG00000003446	RPF2	76	45.528	Pteropus_vampyrus
YKR081C	-	88	42.904	ENSPNAG00000000082	rpf2	95	42.904	Pygocentrus_nattereri
YKR081C	-	89	43.607	ENSRNOG00000000587	Rpf2	96	43.607	Rattus_norvegicus
YKR081C	-	85	45.238	ENSRBIG00000038389	RPF2	92	45.238	Rhinopithecus_bieti
YKR081C	-	74	40.234	ENSRROG00000036685	-	93	40.234	Rhinopithecus_roxellana
YKR081C	-	72	41.129	ENSRROG00000028992	-	78	41.129	Rhinopithecus_roxellana
YKR081C	-	80	37.681	ENSRROG00000039510	-	98	37.681	Rhinopithecus_roxellana
YKR081C	-	85	45.578	ENSRROG00000036457	RPF2	92	45.578	Rhinopithecus_roxellana
YKR081C	-	80	37.455	ENSSBOG00000022486	-	91	37.455	Saimiri_boliviensis_boliviensis
YKR081C	-	81	34.164	ENSSBOG00000034420	-	89	34.164	Saimiri_boliviensis_boliviensis
YKR081C	-	85	37.457	ENSSBOG00000025434	-	95	37.457	Saimiri_boliviensis_boliviensis
YKR081C	-	73	32.669	ENSSBOG00000029182	-	91	32.669	Saimiri_boliviensis_boliviensis
YKR081C	-	59	36.275	ENSSBOG00000030264	-	79	36.275	Saimiri_boliviensis_boliviensis
YKR081C	-	85	46.939	ENSSHAG00000002212	RPF2	91	46.939	Sarcophilus_harrisii
YKR081C	-	87	44.079	ENSSFOG00015020916	rpf2	95	44.079	Scleropages_formosus
YKR081C	-	85	44.027	ENSSMAG00000017499	rpf2	91	44.027	Scophthalmus_maximus
YKR081C	-	89	43.042	ENSSDUG00000010383	rpf2	94	43.042	Seriola_dumerili
YKR081C	-	89	45.307	ENSSLDG00000022111	rpf2	96	45.307	Seriola_lalandi_dorsalis
YKR081C	-	85	32.993	ENSSARG00000012063	RPF2	92	32.993	Sorex_araneus
YKR081C	-	88	42.623	ENSSPUG00000005108	RPF2	94	42.623	Sphenodon_punctatus
YKR081C	-	85	44.898	ENSSPAG00000008035	rpf2	91	44.898	Stegastes_partitus
YKR081C	-	85	45.918	ENSSSCG00000004394	RPF2	92	45.918	Sus_scrofa
YKR081C	-	88	45.545	ENSTGUG00000012034	RPF2	95	45.545	Taeniopygia_guttata
YKR081C	-	87	44.884	ENSTRUG00000018264	rpf2	94	44.884	Takifugu_rubripes
YKR081C	-	88	41.503	ENSTNIG00000002749	rpf2	96	41.503	Tetraodon_nigroviridis
YKR081C	-	72	42.276	ENSTBEG00000017151	RPF2	68	44.796	Tupaia_belangeri
YKR081C	-	85	45.578	ENSTTRG00000012357	RPF2	92	45.578	Tursiops_truncatus
YKR081C	-	85	46.259	ENSUAMG00000013497	RPF2	92	46.259	Ursus_americanus
YKR081C	-	85	46.259	ENSUMAG00000025488	RPF2	92	46.259	Ursus_maritimus
YKR081C	-	85	46.259	ENSVPAG00000009562	RPF2	92	46.259	Vicugna_pacos
YKR081C	-	85	40.678	ENSVVUG00000006593	-	92	40.476	Vulpes_vulpes
YKR081C	-	80	38.909	ENSVVUG00000021231	-	92	38.909	Vulpes_vulpes
YKR081C	-	88	44.224	ENSXETG00000021335	rpf2	94	44.224	Xenopus_tropicalis
YKR081C	-	85	42.034	ENSXCOG00000001590	rpf2	92	42.034	Xiphophorus_couchianus
YKR081C	-	85	39.249	ENSXMAG00000021706	rpf2	91	39.249	Xiphophorus_maculatus