EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YKR084C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1836
Position: chrXI:597055-598890
Accession: S000001792
RBP type: canonical RBP
Summary: GTPase with similarity to translation release factors%3B together with binding partner Dom34p%2C facilitates ribosomal subunit dissociation and peptidyl-tRNA release when translation is stalled%2C particularly in 3' UTRs%3B genetically implicated in mRNA no-go decay%3B HBS1 has a paralog%2C SKI7%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YKR084C_mRNA	GTP_EFTU	PF00009.27	4.5e-44	1	1
YKR084C_mRNA	GTP_EFTU_D3	PF03143.17	1.4e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download YKR084C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YKR084C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YKR084C	-	73	30.508	YPR080W	TEF1	75	32.973
YKR084C	-	73	30.357	YDR172W	SUP35	62	30.357
YKR084C	-	73	30.508	YBR118W	TEF2	75	32.973

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YKR084C	-	73	38.876	ENSG00000112339	HBS1L	92	36.747	Homo_sapiens
YKR084C	-	64	38.660	ENSAPOG00000013169	hbs1l	62	38.660	Acanthochromis_polyacanthus
YKR084C	-	73	38.964	ENSAMEG00000009749	HBS1L	62	38.964	Ailuropoda_melanoleuca
YKR084C	-	73	38.876	ENSACIG00000017087	hbs1l	74	38.876	Amphilophus_citrinellus
YKR084C	-	73	38.427	ENSAPEG00000008320	hbs1l	61	38.427	Amphiprion_percula
YKR084C	-	73	38.255	ENSATEG00000004459	hbs1l	61	38.255	Anabas_testudineus
YKR084C	-	73	37.753	ENSAPLG00000007791	HBS1L	63	37.753	Anas_platyrhynchos
YKR084C	-	73	38.202	ENSACAG00000010120	HBS1L	62	38.202	Anolis_carolinensis
YKR084C	-	73	39.326	ENSANAG00000038076	HBS1L	68	39.367	Aotus_nancymaae
YKR084C	-	73	38.926	ENSACLG00000010469	hbs1l	62	38.926	Astatotilapia_calliptera
YKR084C	-	73	38.341	ENSAMXG00000004260	hbs1l	73	38.202	Astyanax_mexicanus
YKR084C	-	72	39.503	ENSBTAG00000020174	HBS1L	62	39.503	Bos_taurus
YKR084C	-	72	37.162	WBGene00010622	K07A12.4	71	37.162	Caenorhabditis_elegans
YKR084C	-	73	39.101	ENSCJAG00000007678	HBS1L	67	39.140	Callithrix_jacchus
YKR084C	-	73	39.326	ENSCAFG00000000226	HBS1L	62	39.326	Canis_familiaris
YKR084C	-	73	39.326	ENSCAFG00020021904	HBS1L	62	39.326	Canis_lupus_dingo
YKR084C	-	72	39.503	ENSCHIG00000010299	HBS1L	63	39.367	Capra_hircus
YKR084C	-	73	38.876	ENSTSYG00000007089	HBS1L	68	38.876	Carlito_syrichta
YKR084C	-	63	35.938	ENSCPOG00000007015	HBS1L	58	35.938	Cavia_porcellus
YKR084C	-	73	39.101	ENSCCAG00000033863	HBS1L	71	39.101	Cebus_capucinus
YKR084C	-	73	38.876	ENSCATG00000043042	HBS1L	67	38.914	Cercocebus_atys
YKR084C	-	73	38.876	ENSCLAG00000004937	HBS1L	62	38.876	Chinchilla_lanigera
YKR084C	-	72	38.914	ENSCSAG00000016791	HBS1L	61	38.914	Chlorocebus_sabaeus
YKR084C	-	62	31.316	ENSCHOG00000001852	HBS1L	55	31.316	Choloepus_hoffmanni
YKR084C	-	77	37.657	ENSCPBG00000017635	HBS1L	67	37.657	Chrysemys_picta_bellii
YKR084C	-	73	35.730	ENSCING00000005592	-	60	35.730	Ciona_intestinalis
YKR084C	-	73	35.347	ENSCSAVG00000002297	-	69	35.347	Ciona_savignyi
YKR084C	-	73	38.876	ENSCANG00000031208	HBS1L	67	38.914	Colobus_angolensis_palliatus
YKR084C	-	73	38.876	ENSCGRG00001024531	Hbs1l	62	38.876	Cricetulus_griseus_chok1gshd
YKR084C	-	73	38.876	ENSCGRG00000017361	Hbs1l	62	38.876	Cricetulus_griseus_crigri
YKR084C	-	73	38.427	ENSCSEG00000002794	hbs1l	63	38.202	Cynoglossus_semilaevis
YKR084C	-	73	39.374	ENSCVAG00000001462	hbs1l	61	39.374	Cyprinodon_variegatus
YKR084C	-	79	36.401	ENSDARG00000036778	hbs1l	71	36.401	Danio_rerio
YKR084C	-	73	39.101	ENSDORG00000005958	Hbs1l	63	39.101	Dipodomys_ordii
YKR084C	-	73	36.726	FBgn0042712	HBS1	63	36.726	Drosophila_melanogaster
YKR084C	-	68	36.364	ENSETEG00000000913	HBS1L	58	36.364	Echinops_telfairi
YKR084C	-	80	35.542	ENSEBUG00000010759	hbs1l	80	35.542	Eptatretus_burgeri
YKR084C	-	73	38.876	ENSEASG00005011148	HBS1L	64	38.876	Equus_asinus_asinus
YKR084C	-	77	37.866	ENSECAG00000004470	HBS1L	71	37.866	Equus_caballus
YKR084C	-	73	39.150	ENSEEUG00000013582	HBS1L	62	39.150	Erinaceus_europaeus
YKR084C	-	65	38.710	ENSELUG00000006444	hbs1l	65	38.614	Esox_lucius
YKR084C	-	73	39.101	ENSFCAG00000001810	HBS1L	82	39.101	Felis_catus
YKR084C	-	73	38.652	ENSFALG00000011898	HBS1L	71	38.652	Ficedula_albicollis
YKR084C	-	73	38.876	ENSFDAG00000011841	HBS1L	62	38.876	Fukomys_damarensis
YKR084C	-	73	39.775	ENSFHEG00000006942	hbs1l	66	39.462	Fundulus_heteroclitus
YKR084C	-	73	38.876	ENSGMOG00000011843	hbs1l	63	38.876	Gadus_morhua
YKR084C	-	78	37.474	ENSGALG00000013962	HBS1L	71	37.474	Gallus_gallus
YKR084C	-	73	38.702	ENSGAFG00000004157	hbs1l	61	38.702	Gambusia_affinis
YKR084C	-	90	33.277	ENSGACG00000011035	hbs1l	66	37.474	Gasterosteus_aculeatus
YKR084C	-	77	37.657	ENSGAGG00000002033	HBS1L	66	37.657	Gopherus_agassizii
YKR084C	-	73	36.180	ENSGGOG00000034956	-	90	32.812	Gorilla_gorilla
YKR084C	-	73	38.926	ENSHBUG00000013424	hbs1l	62	38.926	Haplochromis_burtoni
YKR084C	-	73	38.652	ENSHGLG00000000516	HBS1L	62	38.652	Heterocephalus_glaber_female
YKR084C	-	73	38.652	ENSHGLG00100003550	HBS1L	62	38.652	Heterocephalus_glaber_male
YKR084C	-	73	38.427	ENSHCOG00000007581	hbs1l	58	38.427	Hippocampus_comes
YKR084C	-	73	37.978	ENSIPUG00000010748	hbs1l	63	37.978	Ictalurus_punctatus
YKR084C	-	73	38.876	ENSSTOG00000007551	HBS1L	66	38.876	Ictidomys_tridecemlineatus
YKR084C	-	72	38.149	ENSJJAG00000017024	-	61	38.149	Jaculus_jaculus
YKR084C	-	73	38.479	ENSKMAG00000012130	hbs1l	70	38.293	Kryptolebias_marmoratus
YKR084C	-	73	37.584	ENSLBEG00000002784	hbs1l	69	37.528	Labrus_bergylta
YKR084C	-	64	37.887	ENSLACG00000004528	HBS1L	76	37.887	Latimeria_chalumnae
YKR084C	-	73	37.808	ENSLOCG00000016221	hbs1l	60	37.808	Lepisosteus_oculatus
YKR084C	-	73	38.565	ENSLAFG00000007835	HBS1L	62	38.600	Loxodonta_africana
YKR084C	-	73	38.876	ENSMFAG00000003766	HBS1L	68	38.876	Macaca_fascicularis
YKR084C	-	73	38.876	ENSMMUG00000004802	HBS1L	77	38.876	Macaca_mulatta
YKR084C	-	73	38.876	ENSMNEG00000043942	HBS1L	68	38.876	Macaca_nemestrina
YKR084C	-	73	38.876	ENSMLEG00000043218	HBS1L	67	38.914	Mandrillus_leucophaeus
YKR084C	-	82	37.328	ENSMAMG00000016498	hbs1l	76	37.328	Mastacembelus_armatus
YKR084C	-	73	38.926	ENSMZEG00005024018	-	73	38.926	Maylandia_zebra
YKR084C	-	73	38.926	ENSMZEG00005015575	hbs1l	62	38.926	Maylandia_zebra
YKR084C	-	78	37.267	ENSMGAG00000013065	HBS1L	67	37.267	Meleagris_gallopavo
YKR084C	-	73	38.876	ENSMAUG00000001077	Hbs1l	62	38.876	Mesocricetus_auratus
YKR084C	-	73	33.857	ENSMICG00000030043	-	93	31.771	Microcebus_murinus
YKR084C	-	72	37.923	ENSMICG00000001533	-	70	37.923	Microcebus_murinus
YKR084C	-	73	38.652	ENSMOCG00000023038	Hbs1l	62	38.652	Microtus_ochrogaster
YKR084C	-	90	34.155	ENSMMOG00000015507	hbs1l	74	36.585	Mola_mola
YKR084C	-	78	38.017	ENSMODG00000017499	HBS1L	68	38.017	Monodelphis_domestica
YKR084C	-	73	38.479	ENSMALG00000010768	hbs1l	68	38.427	Monopterus_albus
YKR084C	-	73	38.427	MGP_CAROLIEiJ_G0015162	Hbs1l	62	38.427	Mus_caroli
YKR084C	-	73	38.427	ENSMUSG00000019977	Hbs1l	84	43.382	Mus_musculus
YKR084C	-	73	37.753	MGP_PahariEiJ_G0023782	Hbs1l	62	37.753	Mus_pahari
YKR084C	-	73	38.427	MGP_SPRETEiJ_G0015970	Hbs1l	62	38.427	Mus_spretus
YKR084C	-	73	39.101	ENSMPUG00000014810	HBS1L	62	39.101	Mustela_putorius_furo
YKR084C	-	73	38.652	ENSMLUG00000010618	HBS1L	62	38.652	Myotis_lucifugus
YKR084C	-	77	37.448	ENSNGAG00000015184	Hbs1l	67	37.448	Nannospalax_galili
YKR084C	-	73	38.926	ENSNBRG00000020095	hbs1l	70	38.926	Neolamprologus_brichardi
YKR084C	-	73	38.876	ENSNLEG00000014721	HBS1L	68	38.876	Nomascus_leucogenys
YKR084C	-	53	35.398	ENSOPRG00000013595	HBS1L	61	35.398	Ochotona_princeps
YKR084C	-	72	38.826	ENSODEG00000008959	HBS1L	63	38.826	Octodon_degus
YKR084C	-	73	38.926	ENSONIG00000000460	hbs1l	62	38.926	Oreochromis_niloticus
YKR084C	-	72	38.826	ENSOANG00000002684	-	63	38.826	Ornithorhynchus_anatinus
YKR084C	-	72	37.246	ENSOCUG00000011619	HBS1L	62	37.246	Oryctolagus_cuniculus
YKR084C	-	73	38.926	ENSORLG00000016559	hbs1l	60	38.926	Oryzias_latipes
YKR084C	-	73	38.926	ENSORLG00020003827	hbs1l	60	38.926	Oryzias_latipes_hni
YKR084C	-	73	38.889	ENSORLG00015023105	hbs1l	60	38.889	Oryzias_latipes_hsok
YKR084C	-	73	38.976	ENSOMEG00000016715	hbs1l	61	38.976	Oryzias_melastigma
YKR084C	-	73	39.101	ENSOGAG00000012604	HBS1L	62	39.101	Otolemur_garnettii
YKR084C	-	72	39.503	ENSOARG00000005671	-	62	39.503	Ovis_aries
YKR084C	-	73	39.640	ENSOARG00000014798	-	62	39.640	Ovis_aries
YKR084C	-	73	39.101	ENSPPAG00000029900	HBS1L	67	39.140	Pan_paniscus
YKR084C	-	73	39.101	ENSPPRG00000005285	HBS1L	68	39.101	Panthera_pardus
YKR084C	-	73	39.101	ENSPTIG00000015803	HBS1L	68	39.101	Panthera_tigris_altaica
YKR084C	-	73	39.101	ENSPTRG00000018630	HBS1L	67	39.140	Pan_troglodytes
YKR084C	-	73	38.876	ENSPANG00000007075	HBS1L	67	38.914	Papio_anubis
YKR084C	-	78	36.439	ENSPKIG00000023171	hbs1l	74	36.383	Paramormyrops_kingsleyae
YKR084C	-	63	38.329	ENSPSIG00000016467	HBS1L	63	38.329	Pelodiscus_sinensis
YKR084C	-	80	36.308	ENSPMGG00000018051	hbs1l	71	36.308	Periophthalmus_magnuspinnatus
YKR084C	-	73	38.652	ENSPEMG00000014369	Hbs1l	62	38.652	Peromyscus_maniculatus_bairdii
YKR084C	-	72	37.923	ENSPMAG00000002516	hbs1l	62	37.923	Petromyzon_marinus
YKR084C	-	73	39.374	ENSPFOG00000021764	hbs1l	61	39.374	Poecilia_formosa
YKR084C	-	73	39.150	ENSPLAG00000006193	hbs1l	61	39.150	Poecilia_latipinna
YKR084C	-	73	39.597	ENSPMEG00000000925	hbs1l	64	39.551	Poecilia_mexicana
YKR084C	-	73	38.926	ENSPREG00000011270	hbs1l	61	38.926	Poecilia_reticulata
YKR084C	-	73	38.652	ENSPPYG00000017027	HBS1L	62	38.652	Pongo_abelii
YKR084C	-	73	38.652	ENSPCAG00000007002	HBS1L	62	38.652	Procavia_capensis
YKR084C	-	73	37.978	ENSPVAG00000015229	HBS1L	63	37.978	Pteropus_vampyrus
YKR084C	-	73	39.150	ENSPNYG00000013360	hbs1l	62	39.150	Pundamilia_nyererei
YKR084C	-	73	38.479	ENSPNAG00000026721	hbs1l	66	38.427	Pygocentrus_nattereri
YKR084C	-	73	38.202	ENSRNOG00000014531	Hbs1l	62	38.202	Rattus_norvegicus
YKR084C	-	73	38.876	ENSRBIG00000004484	HBS1L	66	36.735	Rhinopithecus_bieti
YKR084C	-	73	38.876	ENSRROG00000026176	HBS1L	67	38.914	Rhinopithecus_roxellana
YKR084C	-	73	34.234	ENSSBOG00000016930	-	64	34.234	Saimiri_boliviensis_boliviensis
YKR084C	-	73	39.326	ENSSBOG00000019696	-	68	39.367	Saimiri_boliviensis_boliviensis
YKR084C	-	73	39.326	ENSSHAG00000013509	HBS1L	62	39.326	Sarcophilus_harrisii
YKR084C	-	72	37.923	ENSSFOG00015017544	hbs1l	61	37.923	Scleropages_formosus
YKR084C	-	76	37.342	ENSSMAG00000010621	hbs1l	66	37.185	Scophthalmus_maximus
YKR084C	-	73	38.255	ENSSDUG00000012974	hbs1l	61	38.255	Seriola_dumerili
YKR084C	-	76	37.553	ENSSLDG00000004960	hbs1l	73	37.500	Seriola_lalandi_dorsalis
YKR084C	-	73	38.652	ENSSARG00000006747	HBS1L	64	38.652	Sorex_araneus
YKR084C	-	72	38.600	ENSSPUG00000012389	HBS1L	61	38.600	Sphenodon_punctatus
YKR084C	-	64	39.175	ENSSSCG00000004169	HBS1L	60	39.109	Sus_scrofa
YKR084C	-	72	38.826	ENSTGUG00000011507	HBS1L	61	38.826	Taeniopygia_guttata
YKR084C	-	72	38.375	ENSTRUG00000016128	hbs1l	61	38.427	Takifugu_rubripes
YKR084C	-	73	37.808	ENSTNIG00000016320	hbs1l	62	37.808	Tetraodon_nigroviridis
YKR084C	-	73	37.753	ENSTBEG00000009950	HBS1L	62	37.753	Tupaia_belangeri
YKR084C	-	72	38.826	ENSTTRG00000003715	HBS1L	62	38.826	Tursiops_truncatus
YKR084C	-	73	38.876	ENSUAMG00000001064	HBS1L	62	38.876	Ursus_americanus
YKR084C	-	73	38.876	ENSUMAG00000024395	HBS1L	73	38.876	Ursus_maritimus
YKR084C	-	73	38.876	ENSVPAG00000006280	HBS1L	62	38.876	Vicugna_pacos
YKR084C	-	73	39.326	ENSVVUG00000000295	HBS1L	62	39.326	Vulpes_vulpes
YKR084C	-	73	38.565	ENSXETG00000003726	hbs1l	63	38.565	Xenopus_tropicalis
YKR084C	-	73	39.101	ENSXCOG00000005323	hbs1l	62	39.101	Xiphophorus_couchianus
YKR084C	-	73	39.150	ENSXMAG00000004359	hbs1l	61	39.150	Xiphophorus_maculatus