EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YKR086W (Gene tree)
Gene ID: -
Gene Symbol: PRP16
Alias: PRP23|RNA16
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Plus strand
Length: 3216
Position: chrXI:599857-603072
Accession: S000001794
RBP type: canonical RBP
Summary: DEAH-box RNA helicase involved in second catalytic step of splicing and in exon ligation%3B exhibits ATP-dependent RNA unwinding activity%3B mediates the release of Yju2p and Cwc25p in the second step%3B in the absence of ATP%2C stabilizes the binding of Cwc25p to the spliceosome in the first catalytic step%3B missense mutation in human ortholog DHX38 associated with early-onset retinitis pigmentosa

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YKR086W_mRNA	DEAD	PF00270.29	7.3e-09	1	1
YKR086W_mRNA	HA2	PF04408.23	2.1e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
					(aa)

Gene Model

Click here to download YKR086W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YKR086W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YKR086W	PRP16	63	43.822	YGL120C	PRP43	89	43.822
YKR086W	PRP16	63	42.857	YMR128W	ECM16	64	32.882
YKR086W	PRP16	60	47.738	YER013W	-	54	47.738
YKR086W	PRP16	59	37.801	YKL078W	-	88	37.801
YKR086W	PRP16	59	45.840	YNR011C	PRP2	73	45.840

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YKR086W	PRP16	71	49.361	ENSG00000140829	DHX38	72	61.702	Homo_sapiens
YKR086W	PRP16	77	46.982	ENSAPOG00000010788	dhx38	59	49.486	Acanthochromis_polyacanthus
YKR086W	PRP16	71	49.488	ENSAMEG00000002227	DHX38	61	49.488	Ailuropoda_melanoleuca
YKR086W	PRP16	71	49.229	ENSACIG00000000573	dhx38	60	49.229	Amphilophus_citrinellus
YKR086W	PRP16	55	49.186	ENSAOCG00000013483	-	56	49.186	Amphiprion_ocellaris
YKR086W	PRP16	71	49.614	ENSAOCG00000007610	dhx38	60	49.614	Amphiprion_ocellaris
YKR086W	PRP16	71	49.614	ENSAPEG00000011410	dhx38	59	49.614	Amphiprion_percula
YKR086W	PRP16	71	49.614	ENSATEG00000004692	dhx38	59	49.614	Anabas_testudineus
YKR086W	PRP16	71	48.977	ENSAPLG00000015279	DHX38	66	49.096	Anas_platyrhynchos
YKR086W	PRP16	61	52.496	ENSACAG00000008115	DHX38	51	52.496	Anolis_carolinensis
YKR086W	PRP16	71	49.361	ENSANAG00000022259	DHX38	61	49.361	Aotus_nancymaae
YKR086W	PRP16	71	46.658	ENSACLG00000001837	dhx38	59	46.658	Astatotilapia_calliptera
YKR086W	PRP16	76	45.172	ENSAMXG00000004396	dhx38	67	45.172	Astyanax_mexicanus
YKR086W	PRP16	71	49.233	ENSBTAG00000013265	DHX38	61	49.233	Bos_taurus
YKR086W	PRP16	71	51.344	WBGene00003389	mog-1	66	51.344	Caenorhabditis_elegans
YKR086W	PRP16	71	49.361	ENSCJAG00000015103	DHX38	62	49.399	Callithrix_jacchus
YKR086W	PRP16	71	49.616	ENSCAFG00000020228	DHX38	61	49.616	Canis_familiaris
YKR086W	PRP16	72	49.494	ENSCAFG00020020392	DHX38	63	49.494	Canis_lupus_dingo
YKR086W	PRP16	71	49.233	ENSCHIG00000027105	DHX38	61	49.233	Capra_hircus
YKR086W	PRP16	71	49.361	ENSTSYG00000012023	DHX38	61	49.361	Carlito_syrichta
YKR086W	PRP16	71	48.925	ENSCAPG00000016032	DHX38	61	48.925	Cavia_aperea
YKR086W	PRP16	71	49.488	ENSCPOG00000013965	DHX38	60	49.488	Cavia_porcellus
YKR086W	PRP16	71	49.361	ENSCCAG00000031157	DHX38	61	49.361	Cebus_capucinus
YKR086W	PRP16	63	51.818	ENSCATG00000036889	DHX38	56	51.818	Cercocebus_atys
YKR086W	PRP16	71	49.488	ENSCLAG00000008250	DHX38	61	49.488	Chinchilla_lanigera
YKR086W	PRP16	71	49.361	ENSCSAG00000004218	DHX38	61	49.361	Chlorocebus_sabaeus
YKR086W	PRP16	56	56.449	ENSCHOG00000009444	-	86	56.449	Choloepus_hoffmanni
YKR086W	PRP16	77	46.277	ENSCPBG00000027010	DHX38	67	46.358	Chrysemys_picta_bellii
YKR086W	PRP16	68	51.220	ENSCING00000003597	-	64	51.220	Ciona_intestinalis
YKR086W	PRP16	68	51.421	ENSCSAVG00000001117	-	99	56.094	Ciona_savignyi
YKR086W	PRP16	71	49.361	ENSCANG00000039299	DHX38	61	49.361	Colobus_angolensis_palliatus
YKR086W	PRP16	71	49.361	ENSCGRG00001021542	Dhx38	61	49.361	Cricetulus_griseus_chok1gshd
YKR086W	PRP16	71	49.361	ENSCGRG00000017386	Dhx38	61	49.361	Cricetulus_griseus_crigri
YKR086W	PRP16	77	46.391	ENSCSEG00000008437	dhx38	59	49.229	Cynoglossus_semilaevis
YKR086W	PRP16	71	50.064	ENSCVAG00000023150	dhx38	59	50.064	Cyprinodon_variegatus
YKR086W	PRP16	76	46.482	ENSDARG00000100013	dhx38	66	46.482	Danio_rerio
YKR086W	PRP16	71	49.488	ENSDNOG00000006717	DHX38	61	49.488	Dasypus_novemcinctus
YKR086W	PRP16	71	49.488	ENSDORG00000005226	Dhx38	61	49.488	Dipodomys_ordii
YKR086W	PRP16	71	52.124	FBgn0026713	l(1)G0007	87	56.576	Drosophila_melanogaster
YKR086W	PRP16	71	49.742	ENSEBUG00000005875	dhx38	61	49.742	Eptatretus_burgeri
YKR086W	PRP16	71	49.233	ENSEASG00005013249	DHX38	62	49.233	Equus_asinus_asinus
YKR086W	PRP16	71	49.361	ENSECAG00000000526	DHX38	63	50.395	Equus_caballus
YKR086W	PRP16	60	52.574	ENSELUG00000014379	dhx38	51	52.574	Esox_lucius
YKR086W	PRP16	71	49.488	ENSFCAG00000005831	DHX38	61	49.488	Felis_catus
YKR086W	PRP16	71	48.849	ENSFALG00000002671	DHX38	59	48.966	Ficedula_albicollis
YKR086W	PRP16	71	49.361	ENSFDAG00000015601	DHX38	61	49.361	Fukomys_damarensis
YKR086W	PRP16	77	47.156	ENSFHEG00000006031	dhx38	62	49.614	Fundulus_heteroclitus
YKR086W	PRP16	76	46.560	ENSGMOG00000002840	dhx38	67	46.667	Gadus_morhua
YKR086W	PRP16	71	48.977	ENSGALG00000000787	DHX38	60	49.096	Gallus_gallus
YKR086W	PRP16	76	46.544	ENSGAFG00000017271	dhx38	66	46.544	Gambusia_affinis
YKR086W	PRP16	74	48.515	ENSGACG00000015776	dhx38	62	48.515	Gasterosteus_aculeatus
YKR086W	PRP16	77	46.277	ENSGAGG00000015601	DHX38	67	46.358	Gopherus_agassizii
YKR086W	PRP16	71	49.361	ENSGGOG00000013052	DHX38	62	48.669	Gorilla_gorilla
YKR086W	PRP16	71	49.614	ENSHBUG00000013363	dhx38	59	49.614	Haplochromis_burtoni
YKR086W	PRP16	71	49.361	ENSHGLG00000013308	DHX38	61	49.361	Heterocephalus_glaber_female
YKR086W	PRP16	71	48.593	ENSHGLG00100015625	DHX38	61	48.593	Heterocephalus_glaber_male
YKR086W	PRP16	71	49.292	ENSHCOG00000003102	dhx38	60	49.292	Hippocampus_comes
YKR086W	PRP16	76	46.322	ENSIPUG00000006233	DHX38	72	46.322	Ictalurus_punctatus
YKR086W	PRP16	71	49.361	ENSSTOG00000000534	DHX38	61	49.361	Ictidomys_tridecemlineatus
YKR086W	PRP16	64	52.475	ENSJJAG00000015149	Dhx38	60	52.475	Jaculus_jaculus
YKR086W	PRP16	77	47.038	ENSKMAG00000006694	dhx38	59	49.550	Kryptolebias_marmoratus
YKR086W	PRP16	76	46.154	ENSLBEG00000026364	dhx38	67	46.260	Labrus_bergylta
YKR086W	PRP16	71	44.903	ENSLACG00000013007	DHX38	60	44.903	Latimeria_chalumnae
YKR086W	PRP16	76	46.207	ENSLOCG00000004169	dhx38	67	46.207	Lepisosteus_oculatus
YKR086W	PRP16	71	49.488	ENSLAFG00000016360	DHX38	61	49.488	Loxodonta_africana
YKR086W	PRP16	71	49.361	ENSMFAG00000031852	DHX38	61	49.361	Macaca_fascicularis
YKR086W	PRP16	71	49.233	ENSMMUG00000000677	DHX38	61	49.233	Macaca_mulatta
YKR086W	PRP16	71	49.361	ENSMNEG00000045083	DHX38	62	49.107	Macaca_nemestrina
YKR086W	PRP16	71	49.361	ENSMLEG00000029417	DHX38	61	49.361	Mandrillus_leucophaeus
YKR086W	PRP16	71	49.614	ENSMAMG00000021512	dhx38	59	49.614	Mastacembelus_armatus
YKR086W	PRP16	71	46.272	ENSMZEG00005014283	dhx38	59	46.787	Maylandia_zebra
YKR086W	PRP16	71	48.849	ENSMGAG00000008791	DHX38	66	48.966	Meleagris_gallopavo
YKR086W	PRP16	71	49.361	ENSMAUG00000006330	Dhx38	73	49.361	Mesocricetus_auratus
YKR086W	PRP16	71	49.419	ENSMICG00000011402	DHX38	60	49.419	Microcebus_murinus
YKR086W	PRP16	68	50.806	ENSMOCG00000016798	Dhx38	70	46.744	Microtus_ochrogaster
YKR086W	PRP16	82	43.850	ENSMMOG00000016558	dhx38	68	45.853	Mola_mola
YKR086W	PRP16	71	49.354	ENSMODG00000002549	DHX38	60	49.354	Monodelphis_domestica
YKR086W	PRP16	77	46.864	ENSMALG00000021005	dhx38	59	49.486	Monopterus_albus
YKR086W	PRP16	71	49.488	MGP_CAROLIEiJ_G0031541	Dhx38	61	49.488	Mus_caroli
YKR086W	PRP16	71	49.488	ENSMUSG00000037993	Dhx38	61	49.488	Mus_musculus
YKR086W	PRP16	71	49.488	MGP_PahariEiJ_G0023141	Dhx38	61	49.488	Mus_pahari
YKR086W	PRP16	71	49.488	MGP_SPRETEiJ_G0032659	Dhx38	61	49.488	Mus_spretus
YKR086W	PRP16	71	49.488	ENSMPUG00000007766	DHX38	61	49.488	Mustela_putorius_furo
YKR086W	PRP16	71	49.361	ENSMLUG00000013866	DHX38	61	49.361	Myotis_lucifugus
YKR086W	PRP16	71	49.361	ENSNGAG00000014084	Dhx38	61	49.361	Nannospalax_galili
YKR086W	PRP16	71	46.787	ENSNBRG00000010899	dhx38	59	46.787	Neolamprologus_brichardi
YKR086W	PRP16	71	49.361	ENSNLEG00000005630	DHX38	62	49.361	Nomascus_leucogenys
YKR086W	PRP16	52	53.713	ENSMEUG00000007747	-	60	53.713	Notamacropus_eugenii
YKR086W	PRP16	71	48.977	ENSOPRG00000001884	DHX38	61	48.977	Ochotona_princeps
YKR086W	PRP16	77	44.041	ENSOPRG00000012142	-	69	44.141	Ochotona_princeps
YKR086W	PRP16	71	49.488	ENSODEG00000015472	DHX38	61	49.488	Octodon_degus
YKR086W	PRP16	71	49.614	ENSONIG00000005916	dhx38	59	49.614	Oreochromis_niloticus
YKR086W	PRP16	71	48.977	ENSOCUG00000009067	DHX38	61	48.977	Oryctolagus_cuniculus
YKR086W	PRP16	82	44.064	ENSORLG00000007853	dhx38	66	46.260	Oryzias_latipes
YKR086W	PRP16	82	44.064	ENSORLG00020009844	dhx38	66	46.260	Oryzias_latipes_hni
YKR086W	PRP16	82	44.064	ENSORLG00015007999	dhx38	66	46.260	Oryzias_latipes_hsok
YKR086W	PRP16	84	43.684	ENSOMEG00000001782	dhx38	67	45.980	Oryzias_melastigma
YKR086W	PRP16	71	49.361	ENSOGAG00000008658	DHX38	61	49.361	Otolemur_garnettii
YKR086W	PRP16	68	50.736	ENSOARG00000003723	DHX38	59	50.736	Ovis_aries
YKR086W	PRP16	71	49.361	ENSPPAG00000042488	DHX38	62	49.107	Pan_paniscus
YKR086W	PRP16	71	49.488	ENSPPRG00000008930	DHX38	61	49.488	Panthera_pardus
YKR086W	PRP16	71	49.488	ENSPTIG00000017274	DHX38	61	49.488	Panthera_tigris_altaica
YKR086W	PRP16	71	49.361	ENSPTRG00000008338	DHX38	62	49.107	Pan_troglodytes
YKR086W	PRP16	71	49.361	ENSPANG00000022057	DHX38	61	49.361	Papio_anubis
YKR086W	PRP16	71	49.936	ENSPKIG00000009708	dhx38	60	49.936	Paramormyrops_kingsleyae
YKR086W	PRP16	82	42.842	ENSPMGG00000006063	dhx38	68	44.879	Periophthalmus_magnuspinnatus
YKR086W	PRP16	71	49.361	ENSPEMG00000008011	Dhx38	61	49.361	Peromyscus_maniculatus_bairdii
YKR086W	PRP16	71	49.483	ENSPCIG00000001712	DHX38	62	49.483	Phascolarctos_cinereus
YKR086W	PRP16	76	46.101	ENSPFOG00000001246	dhx38	66	46.101	Poecilia_formosa
YKR086W	PRP16	82	44.278	ENSPLAG00000004022	dhx38	66	46.313	Poecilia_latipinna
YKR086W	PRP16	76	46.313	ENSPMEG00000015475	dhx38	66	46.313	Poecilia_mexicana
YKR086W	PRP16	82	44.385