EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YLL008W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Nucleolar DEAD-box protein required for ribosome assembly and function%3B including synthesis of 60S ribosomal subunits%3B constituent of 66S pre-ribosomal particles
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 2259 bases
Position: chrXII:131729-133987
Accession: S000003931
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLL008W_mRNA	DEAD	PF00270.29	6.9e-45	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLL008W_mRNA	-	2259	-	YLL008W_mRNA	752 (aa)	-	P32892

Gene Model

Click here to download YLL008W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YLL008W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YLL008W	-	50	36.340	YHR169W	-	87	36.340
YLL008W	-	52	34.058	YDR243C	-	64	34.817
YLL008W	-	52	38.000	YMR290C	-	72	38.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLL008W	-	74	40.455	ENSG00000124228	DDX27	87	47.083	Homo_sapiens
YLL008W	-	64	43.918	ENSAPOG00000017645	ddx27	62	43.750	Acanthochromis_polyacanthus
YLL008W	-	74	41.563	ENSAMEG00000013627	DDX27	59	44.235	Ailuropoda_melanoleuca
YLL008W	-	64	44.720	ENSACIG00000014378	ddx27	94	51.064	Amphilophus_citrinellus
YLL008W	-	67	43.478	ENSAOCG00000021035	ddx27	62	44.167	Amphiprion_ocellaris
YLL008W	-	67	43.478	ENSAPEG00000022281	ddx27	62	44.167	Amphiprion_percula
YLL008W	-	67	43.725	ENSATEG00000010093	ddx27	65	44.200	Anabas_testudineus
YLL008W	-	63	44.351	ENSAPLG00000011377	DDX27	63	44.351	Anas_platyrhynchos
YLL008W	-	61	44.708	ENSANAG00000036257	DDX27	61	43.816	Aotus_nancymaae
YLL008W	-	67	44.181	ENSACLG00000014992	ddx27	64	44.024	Astatotilapia_calliptera
YLL008W	-	65	44.828	ENSAMXG00000000911	ddx27	68	41.561	Astyanax_mexicanus
YLL008W	-	61	45.356	ENSBTAG00000006671	DDX27	62	44.764	Bos_taurus
YLL008W	-	62	45.957	WBGene00022148	ddx-27	62	45.957	Caenorhabditis_elegans
YLL008W	-	70	42.048	ENSCJAG00000016135	DDX27	61	43.816	Callithrix_jacchus
YLL008W	-	70	43.321	ENSCAFG00000011384	DDX27	61	44.259	Canis_familiaris
YLL008W	-	70	44.037	ENSCAFG00020017143	DDX27	62	44.259	Canis_lupus_dingo
YLL008W	-	61	45.356	ENSCHIG00000007753	DDX27	64	44.764	Capra_hircus
YLL008W	-	61	44.924	ENSTSYG00000030362	DDX27	61	44.025	Carlito_syrichta
YLL008W	-	61	45.140	ENSCAPG00000010800	DDX27	63	44.235	Cavia_aperea
YLL008W	-	61	45.140	ENSCPOG00000002009	DDX27	61	44.235	Cavia_porcellus
YLL008W	-	61	44.708	ENSCCAG00000029782	DDX27	59	43.816	Cebus_capucinus
YLL008W	-	61	44.924	ENSCATG00000034832	DDX27	61	44.025	Cercocebus_atys
YLL008W	-	61	45.788	ENSCLAG00000008075	DDX27	61	44.864	Chinchilla_lanigera
YLL008W	-	70	42.230	ENSCSAG00000014996	DDX27	61	44.025	Chlorocebus_sabaeus
YLL008W	-	63	44.491	ENSCPBG00000026800	DDX27	60	44.235	Chrysemys_picta_bellii
YLL008W	-	61	43.590	ENSCING00000004235	-	68	41.667	Ciona_intestinalis
YLL008W	-	56	42.155	ENSCSAVG00000006949	-	84	42.155	Ciona_savignyi
YLL008W	-	61	39.957	ENSCANG00000038431	DDX27	58	39.203	Colobus_angolensis_palliatus
YLL008W	-	61	45.356	ENSCGRG00001015330	Ddx27	59	44.444	Cricetulus_griseus_chok1gshd
YLL008W	-	61	45.356	ENSCGRG00000008199	Ddx27	61	44.444	Cricetulus_griseus_crigri
YLL008W	-	63	44.330	ENSCSEG00000020260	ddx27	64	44.239	Cynoglossus_semilaevis
YLL008W	-	61	45.238	ENSCVAG00000011736	ddx27	59	45.238	Cyprinodon_variegatus
YLL008W	-	68	42.065	ENSDARG00000091831	ddx27	65	42.004	Danio_rerio
YLL008W	-	61	45.455	ENSDNOG00000019453	DDX27	58	44.538	Dasypus_novemcinctus
YLL008W	-	70	41.503	ENSDORG00000014137	Ddx27	61	44.025	Dipodomys_ordii
YLL008W	-	63	46.186	FBgn0021995	Rs1	62	45.110	Drosophila_melanogaster
YLL008W	-	53	41.593	ENSETEG00000018239	DDX27	50	41.593	Echinops_telfairi
YLL008W	-	63	44.235	ENSEBUG00000004326	ddx27	72	44.025	Eptatretus_burgeri
YLL008W	-	70	43.446	ENSEASG00005023342	DDX27	68	43.373	Equus_asinus_asinus
YLL008W	-	69	42.701	ENSECAG00000020963	DDX27	61	44.444	Equus_caballus
YLL008W	-	65	43.737	ENSELUG00000014535	ddx27	58	44.805	Esox_lucius
YLL008W	-	70	41.869	ENSFCAG00000001448	DDX27	61	44.444	Felis_catus
YLL008W	-	63	45.188	ENSFALG00000004884	DDX27	64	45.188	Ficedula_albicollis
YLL008W	-	63	44.654	ENSFDAG00000018681	DDX27	62	44.467	Fukomys_damarensis
YLL008W	-	64	43.827	ENSFHEG00000006419	ddx27	85	54.605	Fundulus_heteroclitus
YLL008W	-	72	41.953	ENSGALG00000006974	DDX27	61	44.351	Gallus_gallus
YLL008W	-	66	44.289	ENSGAFG00000020344	ddx27	66	44.289	Gambusia_affinis
YLL008W	-	63	43.187	ENSGACG00000003177	ddx27	61	43.187	Gasterosteus_aculeatus
YLL008W	-	63	44.025	ENSGAGG00000001296	DDX27	63	44.025	Gopherus_agassizii
YLL008W	-	61	43.656	ENSGGOG00000015474	-	75	42.945	Gorilla_gorilla
YLL008W	-	67	44.379	ENSHBUG00000008119	ddx27	65	44.223	Haplochromis_burtoni
YLL008W	-	63	44.444	ENSHGLG00000008388	DDX27	61	44.444	Heterocephalus_glaber_female
YLL008W	-	63	44.444	ENSHGLG00100000130	DDX27	61	44.444	Heterocephalus_glaber_male
YLL008W	-	61	45.238	ENSIPUG00000024627	ddx27	58	45.238	Ictalurus_punctatus
YLL008W	-	63	44.235	ENSSTOG00000003645	DDX27	61	44.235	Ictidomys_tridecemlineatus
YLL008W	-	61	45.415	ENSJJAG00000009056	Ddx27	62	45.415	Jaculus_jaculus
YLL008W	-	64	44.720	ENSKMAG00000014889	ddx27	62	44.720	Kryptolebias_marmoratus
YLL008W	-	72	41.101	ENSLBEG00000022589	ddx27	64	43.478	Labrus_bergylta
YLL008W	-	64	45.175	ENSLACG00000011592	DDX27	60	45.175	Latimeria_chalumnae
YLL008W	-	67	42.744	ENSLOCG00000002659	ddx27	60	43.908	Lepisosteus_oculatus
YLL008W	-	61	46.220	ENSLAFG00000012190	DDX27	61	45.283	Loxodonta_africana
YLL008W	-	70	42.491	ENSMFAG00000045749	DDX27	61	44.025	Macaca_fascicularis
YLL008W	-	70	42.962	ENSMMUG00000023621	DDX27	61	44.025	Macaca_mulatta
YLL008W	-	70	42.962	ENSMNEG00000043931	DDX27	61	44.025	Macaca_nemestrina
YLL008W	-	61	42.765	ENSMLEG00000028160	DDX27	59	41.929	Mandrillus_leucophaeus
YLL008W	-	72	41.293	ENSMAMG00000009174	ddx27	62	44.956	Mastacembelus_armatus
YLL008W	-	67	44.379	ENSMZEG00005008750	ddx27	64	44.223	Maylandia_zebra
YLL008W	-	73	42.143	ENSMGAG00000008727	DDX27	68	44.468	Meleagris_gallopavo
YLL008W	-	61	45.572	ENSMAUG00000000552	Ddx27	61	44.654	Mesocricetus_auratus
YLL008W	-	74	40.964	ENSMICG00000002005	DDX27	61	44.235	Microcebus_murinus
YLL008W	-	61	45.572	ENSMOCG00000019594	Ddx27	61	44.654	Microtus_ochrogaster
YLL008W	-	78	40.541	ENSMMOG00000012754	ddx27	62	43.763	Mola_mola
YLL008W	-	91	36.865	ENSMODG00000016285	DDX27	69	40.070	Monodelphis_domestica
YLL008W	-	65	43.625	ENSMALG00000020942	ddx27	66	44.306	Monopterus_albus
YLL008W	-	75	40.708	MGP_CAROLIEiJ_G0024700	Ddx27	61	44.654	Mus_caroli
YLL008W	-	70	42.185	ENSMUSG00000017999	Ddx27	61	44.654	Mus_musculus
YLL008W	-	70	42.750	MGP_PahariEiJ_G0026142	Ddx27	61	44.864	Mus_pahari
YLL008W	-	70	42.185	MGP_SPRETEiJ_G0025620	Ddx27	61	44.654	Mus_spretus
YLL008W	-	71	42.039	ENSMPUG00000017572	DDX27	60	44.235	Mustela_putorius_furo
YLL008W	-	74	40.773	ENSMLUG00000003186	DDX27	58	45.119	Myotis_lucifugus
YLL008W	-	61	45.572	ENSNGAG00000023115	Ddx27	61	44.654	Nannospalax_galili
YLL008W	-	57	53.061	ENSNLEG00000006961	DDX27	59	53.061	Nomascus_leucogenys
YLL008W	-	61	45.788	ENSOPRG00000014589	DDX27	60	44.864	Ochotona_princeps
YLL008W	-	61	45.572	ENSODEG00000006281	DDX27	61	44.654	Octodon_degus
YLL008W	-	67	44.379	ENSONIG00000019473	ddx27	64	44.223	Oreochromis_niloticus
YLL008W	-	71	41.503	ENSOANG00000006395	DDX27	60	44.864	Ornithorhynchus_anatinus
YLL008W	-	61	45.572	ENSOCUG00000016108	DDX27	58	44.654	Oryctolagus_cuniculus
YLL008W	-	64	44.124	ENSORLG00000013059	ddx27	67	43.026	Oryzias_latipes
YLL008W	-	67	42.998	ENSORLG00020021215	ddx27	67	42.773	Oryzias_latipes_hni
YLL008W	-	64	44.033	ENSORLG00015017588	ddx27	65	43.222	Oryzias_latipes_hsok
YLL008W	-	64	44.239	ENSOMEG00000023896	ddx27	61	44.536	Oryzias_melastigma
YLL008W	-	61	45.140	ENSOGAG00000002130	DDX27	60	44.561	Otolemur_garnettii
YLL008W	-	61	45.356	ENSOARG00000012345	DDX27	67	44.764	Ovis_aries
YLL008W	-	74	40.455	ENSPPAG00000035843	DDX27	64	44.025	Pan_paniscus
YLL008W	-	67	43.503	ENSPPRG00000006728	DDX27	61	44.444	Panthera_pardus
YLL008W	-	67	43.503	ENSPTIG00000011662	DDX27	61	44.444	Panthera_tigris_altaica
YLL008W	-	74	41.166	ENSPTRG00000013602	DDX27	61	42.917	Pan_troglodytes
YLL008W	-	61	38.229	ENSPANG00000000820	DDX27	60	37.526	Papio_anubis
YLL008W	-	63	44.000	ENSPKIG00000002802	ddx27	59	44.000	Paramormyrops_kingsleyae
YLL008W	-	61	44.421	ENSPSIG00000014493	DDX27	68	43.750	Pelodiscus_sinensis
YLL008W	-	64	44.167	ENSPMGG00000013002	ddx27	62	44.235	Periophthalmus_magnuspinnatus
YLL008W	-	61	45.572	ENSPEMG00000023215	Ddx27	61	44.654	Peromyscus_maniculatus_bairdii
YLL008W	-	64	43.035	ENSPMAG00000003094	ddx27	59	43.659	Petromyzon_marinus
YLL008W	-	63	45.702	ENSPCIG00000008052	DDX27	80	44.715	Phascolarctos_cinereus
YLL008W	-	66	44.289	ENSPFOG00000012217	ddx27	66	44.289	Poecilia_formosa
YLL008W	-	66	44.088	ENSPLAG00000005431	ddx27	64	44.088	Poecilia_latipinna
YLL008W	-	57	43.357	ENSPMEG00000005563	ddx27	81	43.357	Poecilia_mexicana
YLL008W	-	61	44.924	ENSPPYG00000011113	DDX27	61	44.025	Pongo_abelii
YLL008W	-	74	40.722	ENSPCOG00000025327	DDX27	59	44.235	Propithecus_coquereli
YLL008W	-	61	44.924	ENSPVAG00000006308	DDX27	59	44.025	Pteropus_vampyrus
YLL008W	-	64	44.906	ENSPNYG00000014670	ddx27	73	60.227	Pundamilia_nyererei
YLL008W	-	70	43.074	ENSPNAG00000016043	ddx27	59	46.104	Pygocentrus_nattereri
YLL008W	-	74	41.281	ENSRNOG00000008081	Ddx27	61	44.654	Rattus_norvegicus
YLL008W	-	61	44.924	ENSRBIG00000024112	DDX27	61	43.933	Rhinopithecus_bieti
YLL008W	-	61	44.924	ENSRROG00000024811	DDX27	61	44.025	Rhinopithecus_roxellana
YLL008W	-	61	44.924	ENSSBOG00000034281	DDX27	61	44.025	Saimiri_boliviensis_boliviensis
YLL008W	-	67	42.490	ENSSMAG00000006972	ddx27	61	43.271	Scophthalmus_maximus
YLL008W	-	63	43.659	ENSSDUG00000018855	ddx27	59	45.455	Seriola_dumerili
YLL008W	-	72	41.284	ENSSLDG00000004114	ddx27	62	43.892	Seriola_lalandi_dorsalis
YLL008W	-	64	45.041	ENSSPUG00000015687	DDX27	69	45.702	Sphenodon_punctatus
YLL008W	-	66	42.715	ENSSPAG00000007670	ddx27	68	42.715	Stegastes_partitus
YLL008W	-	61	45.356	ENSSSCG00000022915	DDX27	65	44.770	Sus_scrofa
YLL008W	-	63	45.188	ENSTGUG00000005649	DDX27	62	45.188	Taeniopygia_guttata
YLL008W	-	66	42.772	ENSTRUG00000002089	ddx27	67	43.205	Takifugu_rubripes
YLL008W	-	68	43.023	ENSTNIG00000002987	ddx27	59	45.238	Tetraodon_nigroviridis
YLL008W	-	61	39.957	ENSTBEG00000005320	DDX27	59	39.203	Tupaia_belangeri
YLL008W	-	61	45.140	ENSTTRG00000004288	DDX27	59	44.561	Tursiops_truncatus
YLL008W	-	69	42.674	ENSUAMG00000025519	DDX27	63	44.235	Ursus_americanus
YLL008W	-	69	43.223	ENSUMAG00000024473	DDX27	59	45.140	Ursus_maritimus
YLL008W	-	51	57.325	ENSVPAG00000001314	DDX27	50	57.325	Vicugna_pacos
YLL008W	-	70	43.321	ENSVVUG00000022331	DDX27	61	44.259	Vulpes_vulpes
YLL008W	-	64	44.513	ENSXCOG00000017180	ddx27	63	44.513	Xiphophorus_couchianus
YLL008W	-	66	44.289	ENSXMAG00000012284	ddx27	65	44.135	Xiphophorus_maculatus