EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YLL011W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Protein required for biogenesis of 40S (small) ribosomal subunit%3B has similarity to the beta subunit of trimeric G-proteins and the splicing factor Prp4p%3B essential gene
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1470 bases
Position: chrXII:127523-128992
Accession: S000003934
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLL011W_mRNA	Sof1	PF04158.14	6.2e-29	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLL011W_mRNA	-	1470	-	YLL011W_mRNA	489 (aa)	-	P33750

Gene Model

Click here to download YLL011W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YLL011W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLL011W	-	93	45.633	ENSG00000164934	DCAF13	99	51.724	Homo_sapiens
YLL011W	-	95	45.824	ENSAPOG00000000524	dcaf13	99	45.824	Acanthochromis_polyacanthus
YLL011W	-	95	44.968	ENSAMEG00000001595	DCAF13	99	44.968	Ailuropoda_melanoleuca
YLL011W	-	95	45.396	ENSACIG00000003110	dcaf13	99	45.396	Amphilophus_citrinellus
YLL011W	-	95	46.039	ENSAOCG00000011982	dcaf13	99	46.039	Amphiprion_ocellaris
YLL011W	-	94	42.827	ENSAPEG00000021156	dcaf13	98	42.827	Amphiprion_percula
YLL011W	-	95	45.824	ENSATEG00000024751	dcaf13	99	45.824	Anabas_testudineus
YLL011W	-	95	45.940	ENSAPLG00000002811	DCAF13	99	45.940	Anas_platyrhynchos
YLL011W	-	95	46.467	ENSACAG00000009465	DCAF13	99	46.467	Anolis_carolinensis
YLL011W	-	95	35.760	ENSANAG00000023472	-	99	36.188	Aotus_nancymaae
YLL011W	-	95	45.824	ENSANAG00000020798	DCAF13	99	45.824	Aotus_nancymaae
YLL011W	-	95	45.824	ENSACLG00000025212	dcaf13	90	45.824	Astatotilapia_calliptera
YLL011W	-	95	45.940	ENSAMXG00000037008	dcaf13	99	45.940	Astyanax_mexicanus
YLL011W	-	91	47.178	ENSBTAG00000021449	DCAF13	99	46.253	Bos_taurus
YLL011W	-	95	35.622	WBGene00022742	ZK430.7	99	35.622	Caenorhabditis_elegans
YLL011W	-	93	45.633	ENSCJAG00000016181	DCAF13	99	45.610	Callithrix_jacchus
YLL011W	-	95	45.610	ENSCAFG00000000663	DCAF13	99	45.610	Canis_familiaris
YLL011W	-	95	45.610	ENSCAFG00020003044	DCAF13	99	45.610	Canis_lupus_dingo
YLL011W	-	95	46.681	ENSCHIG00000020556	DCAF13	99	46.681	Capra_hircus
YLL011W	-	95	45.824	ENSTSYG00000003307	DCAF13	99	45.824	Carlito_syrichta
YLL011W	-	90	42.793	ENSCAPG00000007305	DCAF13	98	42.793	Cavia_aperea
YLL011W	-	95	45.824	ENSCPOG00000012291	DCAF13	99	45.824	Cavia_porcellus
YLL011W	-	95	45.726	ENSCCAG00000033103	DCAF13	76	45.726	Cebus_capucinus
YLL011W	-	95	45.824	ENSCATG00000032160	DCAF13	85	45.824	Cercocebus_atys
YLL011W	-	95	35.484	ENSCATG00000037371	-	95	35.484	Cercocebus_atys
YLL011W	-	95	45.396	ENSCLAG00000006565	DCAF13	99	45.396	Chinchilla_lanigera
YLL011W	-	95	45.824	ENSCSAG00000011887	DCAF13	99	45.824	Chlorocebus_sabaeus
YLL011W	-	67	41.463	ENSCHOG00000003007	-	73	41.463	Choloepus_hoffmanni
YLL011W	-	95	46.368	ENSCPBG00000026050	DCAF13	99	46.368	Chrysemys_picta_bellii
YLL011W	-	94	44.850	ENSCING00000005282	-	99	44.850	Ciona_intestinalis
YLL011W	-	94	42.796	ENSCSAVG00000006538	-	99	42.796	Ciona_savignyi
YLL011W	-	95	40.899	ENSCANG00000043032	DCAF13	76	40.899	Colobus_angolensis_palliatus
YLL011W	-	88	35.388	ENSCANG00000038828	-	94	35.388	Colobus_angolensis_palliatus
YLL011W	-	95	46.253	ENSCGRG00001023256	Dcaf13	99	46.253	Cricetulus_griseus_chok1gshd
YLL011W	-	92	46.341	ENSCGRG00000004862	Dcaf13	93	46.341	Cricetulus_griseus_crigri
YLL011W	-	95	46.253	ENSCSEG00000013595	dcaf13	99	46.467	Cynoglossus_semilaevis
YLL011W	-	95	37.901	ENSCVAG00000010337	dcaf13	99	37.901	Cyprinodon_variegatus
YLL011W	-	95	45.940	ENSDARG00000002267	dcaf13	99	45.940	Danio_rerio
YLL011W	-	76	46.917	ENSDNOG00000044885	DCAF13	93	46.917	Dasypus_novemcinctus
YLL011W	-	95	44.325	ENSDORG00000011873	Dcaf13	99	44.325	Dipodomys_ordii
YLL011W	-	94	43.871	FBgn0036500	CG7275	99	43.871	Drosophila_melanogaster
YLL011W	-	95	42.644	ENSETEG00000004777	DCAF13	77	42.644	Echinops_telfairi
YLL011W	-	94	41.379	ENSEBUG00000008116	dcaf13	99	41.429	Eptatretus_burgeri
YLL011W	-	95	46.253	ENSEASG00005001266	DCAF13	99	46.253	Equus_asinus_asinus
YLL011W	-	95	46.253	ENSECAG00000009654	DCAF13	99	46.253	Equus_caballus
YLL011W	-	95	40.471	ENSEEUG00000003286	DCAF13	77	40.471	Erinaceus_europaeus
YLL011W	-	95	43.441	ENSELUG00000006191	dcaf13	95	47.942	Esox_lucius
YLL011W	-	95	45.824	ENSFCAG00000027256	DCAF13	99	45.824	Felis_catus
YLL011W	-	95	45.824	ENSFALG00000005982	DCAF13	99	46.253	Ficedula_albicollis
YLL011W	-	95	44.111	ENSFDAG00000014869	DCAF13	99	44.111	Fukomys_damarensis
YLL011W	-	95	46.253	ENSFHEG00000009965	dcaf13	99	46.742	Fundulus_heteroclitus
YLL011W	-	95	45.396	ENSGMOG00000005753	dcaf13	99	45.396	Gadus_morhua
YLL011W	-	95	46.368	ENSGALG00000034618	DCAF13	79	46.368	Gallus_gallus
YLL011W	-	87	48.700	ENSGAFG00000000368	dcaf13	84	48.463	Gambusia_affinis
YLL011W	-	95	44.325	ENSGACG00000004840	dcaf13	99	44.325	Gasterosteus_aculeatus
YLL011W	-	95	46.795	ENSGAGG00000025283	DCAF13	99	46.795	Gopherus_agassizii
YLL011W	-	89	46.437	ENSGGOG00000015124	DCAF13	79	46.396	Gorilla_gorilla
YLL011W	-	95	45.824	ENSHBUG00000015794	dcaf13	90	45.824	Haplochromis_burtoni
YLL011W	-	95	44.111	ENSHGLG00000008862	DCAF13	99	44.111	Heterocephalus_glaber_female
YLL011W	-	95	43.897	ENSHGLG00100017157	DCAF13	99	43.897	Heterocephalus_glaber_male
YLL011W	-	95	45.513	ENSHCOG00000014302	dcaf13	99	45.513	Hippocampus_comes
YLL011W	-	95	45.940	ENSIPUG00000022430	dcaf13	99	45.940	Ictalurus_punctatus
YLL011W	-	93	46.070	ENSSTOG00000008009	DCAF13	99	46.039	Ictidomys_tridecemlineatus
YLL011W	-	95	43.683	ENSJJAG00000001990	-	99	43.683	Jaculus_jaculus
YLL011W	-	78	47.644	ENSJJAG00000000742	-	94	47.644	Jaculus_jaculus
YLL011W	-	95	46.039	ENSKMAG00000002350	dcaf13	99	46.039	Kryptolebias_marmoratus
YLL011W	-	95	45.182	ENSLBEG00000002441	dcaf13	99	45.182	Labrus_bergylta
YLL011W	-	95	46.581	ENSLACG00000013358	DCAF13	99	46.581	Latimeria_chalumnae
YLL011W	-	95	47.109	ENSLOCG00000009498	dcaf13	99	47.109	Lepisosteus_oculatus
YLL011W	-	95	45.610	ENSLAFG00000009807	DCAF13	99	46.467	Loxodonta_africana
YLL011W	-	95	44.325	ENSMFAG00000043378	-	99	44.325	Macaca_fascicularis
YLL011W	-	95	45.824	ENSMFAG00000008982	-	77	45.824	Macaca_fascicularis
YLL011W	-	95	45.610	ENSMMUG00000019594	-	99	45.610	Macaca_mulatta
YLL011W	-	77	44.709	ENSMMUG00000019405	-	70	44.709	Macaca_mulatta
YLL011W	-	95	39.400	ENSMNEG00000033963	-	75	39.400	Macaca_nemestrina
YLL011W	-	95	44.968	ENSMNEG00000035898	-	99	44.968	Macaca_nemestrina
YLL011W	-	95	36.188	ENSMNEG00000030562	-	95	36.188	Macaca_nemestrina
YLL011W	-	95	36.344	ENSMLEG00000039177	-	99	36.344	Mandrillus_leucophaeus
YLL011W	-	95	45.824	ENSMLEG00000041996	DCAF13	99	45.824	Mandrillus_leucophaeus
YLL011W	-	95	46.154	ENSMAMG00000003196	dcaf13	99	46.154	Mastacembelus_armatus
YLL011W	-	95	45.824	ENSMZEG00005012249	dcaf13	90	45.824	Maylandia_zebra
YLL011W	-	90	47.523	ENSMGAG00000012340	DCAF13	99	47.523	Meleagris_gallopavo
YLL011W	-	76	44.415	ENSMAUG00000017580	Dcaf13	84	44.415	Mesocricetus_auratus
YLL011W	-	93	46.070	ENSMICG00000006907	DCAF13	99	46.039	Microcebus_murinus
YLL011W	-	95	46.467	ENSMOCG00000011609	Dcaf13	99	46.467	Microtus_ochrogaster
YLL011W	-	95	45.182	ENSMMOG00000017905	dcaf13	99	45.182	Mola_mola
YLL011W	-	95	45.610	ENSMODG00000005549	DCAF13	99	45.610	Monodelphis_domestica
YLL011W	-	95	45.610	ENSMALG00000007415	dcaf13	99	45.610	Monopterus_albus
YLL011W	-	95	45.824	MGP_CAROLIEiJ_G0019757	Dcaf13	99	45.824	Mus_caroli
YLL011W	-	95	46.253	ENSMUSG00000022300	Dcaf13	99	46.253	Mus_musculus
YLL011W	-	95	46.467	MGP_PahariEiJ_G0019766	Dcaf13	99	46.467	Mus_pahari
YLL011W	-	95	46.253	MGP_SPRETEiJ_G0020654	Dcaf13	99	46.253	Mus_spretus
YLL011W	-	84	43.584	ENSMPUG00000004976	-	94	43.584	Mustela_putorius_furo
YLL011W	-	93	45.415	ENSMLUG00000007375	DCAF13	99	45.396	Myotis_lucifugus
YLL011W	-	95	46.895	ENSNGAG00000021670	Dcaf13	99	46.895	Nannospalax_galili
YLL011W	-	95	45.610	ENSNBRG00000007078	dcaf13	99	45.610	Neolamprologus_brichardi
YLL011W	-	95	31.906	ENSNLEG00000032043	-	99	31.906	Nomascus_leucogenys
YLL011W	-	93	45.415	ENSNLEG00000003791	DCAF13	74	45.396	Nomascus_leucogenys
YLL011W	-	73	45.669	ENSMEUG00000014697	-	80	45.669	Notamacropus_eugenii
YLL011W	-	95	44.968	ENSODEG00000000870	DCAF13	99	44.968	Octodon_degus
YLL011W	-	94	46.336	ENSONIG00000000142	dcaf13	99	46.336	Oreochromis_niloticus
YLL011W	-	95	46.467	ENSOCUG00000009197	DCAF13	99	46.467	Oryctolagus_cuniculus
YLL011W	-	95	46.681	ENSORLG00000002363	dcaf13	99	46.681	Oryzias_latipes
YLL011W	-	95	46.467	ENSORLG00020001143	dcaf13	99	46.467	Oryzias_latipes_hni
YLL011W	-	95	46.467	ENSORLG00015015911	dcaf13	99	46.467	Oryzias_latipes_hsok
YLL011W	-	95	46.039	ENSOMEG00000006040	dcaf13	99	46.039	Oryzias_melastigma
YLL011W	-	93	45.633	ENSOGAG00000002277	DCAF13	99	45.610	Otolemur_garnettii
YLL011W	-	95	46.895	ENSOARG00000016227	DCAF13	99	46.895	Ovis_aries
YLL011W	-	93	45.633	ENSPPAG00000029408	DCAF13	74	45.610	Pan_paniscus
YLL011W	-	95	45.610	ENSPPRG00000005766	DCAF13	99	45.610	Panthera_pardus
YLL011W	-	95	45.824	ENSPTIG00000016790	DCAF13	99	45.824	Panthera_tigris_altaica
YLL011W	-	93	45.633	ENSPTRG00000020493	DCAF13	74	45.610	Pan_troglodytes
YLL011W	-	95	45.824	ENSPANG00000010643	-	77	45.824	Papio_anubis
YLL011W	-	95	44.540	ENSPANG00000026479	-	99	44.540	Papio_anubis
YLL011W	-	95	45.182	ENSPKIG00000017471	dcaf13	99	45.182	Paramormyrops_kingsleyae
YLL011W	-	95	44.754	ENSPSIG00000016768	DCAF13	99	45.396	Pelodiscus_sinensis
YLL011W	-	95	45.396	ENSPMGG00000022144	dcaf13	99	45.396	Periophthalmus_magnuspinnatus
YLL011W	-	95	45.824	ENSPEMG00000011958	Dcaf13	99	45.824	Peromyscus_maniculatus_bairdii
YLL011W	-	95	45.824	ENSPCIG00000026186	DCAF13	99	45.824	Phascolarctos_cinereus
YLL011W	-	95	45.824	ENSPFOG00000019444	dcaf13	99	45.824	Poecilia_formosa
YLL011W	-	95	45.824	ENSPLAG00000015924	dcaf13	99	45.824	Poecilia_latipinna
YLL011W	-	95	45.824	ENSPMEG00000004022	dcaf13	99	45.824	Poecilia_mexicana
YLL011W	-	95	45.824	ENSPREG00000016063	dcaf13	99	45.824	Poecilia_reticulata
YLL011W	-	93	45.852	ENSPPYG00000018809	-	99	45.824	Pongo_abelii
YLL011W	-	93	43.886	ENSPCAG00000007620	DCAF13	75	43.897	Procavia_capensis
YLL011W	-	92	42.605	ENSPCOG00000028064	-	99	42.641	Propithecus_coquereli
YLL011W	-	95	46.253	ENSPVAG00000017178	DCAF13	75	46.253	Pteropus_vampyrus
YLL011W	-	95	45.824	ENSPNYG00000003861	dcaf13	99	45.824	Pundamilia_nyererei
YLL011W	-	95	45.842	ENSPNAG00000010091	dcaf13	99	45.842	Pygocentrus_nattereri
YLL011W	-	95	45.824	ENSRNOG00000004301	Dcaf13	99	45.824	Rattus_norvegicus
YLL011W	-	95	45.824	ENSRBIG00000032300	DCAF13	85	45.824	Rhinopithecus_bieti
YLL011W	-	81	35.101	ENSRROG00000032221	-	90	35.101	Rhinopithecus_roxellana
YLL011W	-	95	45.610	ENSRROG00000040442	DCAF13	99	45.610	Rhinopithecus_roxellana
YLL011W	-	95	45.610	ENSSBOG00000025597	DCAF13	99	45.610	Saimiri_boliviensis_boliviensis
YLL011W	-	95	45.610	ENSSHAG00000006588	DCAF13	99	45.610	Sarcophilus_harrisii
YLL011W	-	95	45.182	ENSSFOG00015006138	dcaf13	99	45.182	Scleropages_formosus
YLL011W	-	95	45.182	ENSSMAG00000009568	dcaf13	99	45.182	Scophthalmus_maximus
YLL011W	-	95	44.754	ENSSLDG00000010517	dcaf13	99	44.754	Seriola_lalandi_dorsalis
YLL011W	-	95	45.182	ENSSPUG00000009148	DCAF13	99	45.610	Sphenodon_punctatus
YLL011W	-	95	45.610	ENSSPAG00000019890	dcaf13	99	45.610	Stegastes_partitus
YLL011W	-	95	44.968	ENSSSCG00000006048	DCAF13	99	44.968	Sus_scrofa
YLL011W	-	90	46.847	ENSTGUG00000012152	DCAF13	99	47.297	Taeniopygia_guttata
YLL011W	-	95	45.182	ENSTRUG00000007438	dcaf13	99	45.182	Takifugu_rubripes
YLL011W	-	90	45.249	ENSTNIG00000008215	dcaf13	85	45.249	Tetraodon_nigroviridis
YLL011W	-	51	42.742	ENSTBEG00000015812	-	50	42.742	Tupaia_belangeri
YLL011W	-	91	39.503	ENSTTRG00000014906	DCAF13	75	38.972	Tursiops_truncatus
YLL011W	-	95	45.610	ENSUAMG00000017931	DCAF13	99	45.610	Ursus_americanus
YLL011W	-	95	41.290	ENSUMAG00000019830	DCAF13	76	41.290	Ursus_maritimus
YLL011W	-	95	45.824	ENSVPAG00000006725	DCAF13	76	45.824	Vicugna_pacos
YLL011W	-	87	47.754	ENSVVUG00000016884	DCAF13	85	47.754	Vulpes_vulpes
YLL011W	-	78	49.608	ENSXETG00000004092	dcaf13	99	49.608	Xenopus_tropicalis
YLL011W	-	95	42.827	ENSXCOG00000017005	dcaf13	99	42.827	Xiphophorus_couchianus
YLL011W	-	95	46.253	ENSXMAG00000026809	dcaf13	99	46.253	Xiphophorus_maculatus