EuRBPDB

Description

Ensembl ID: YLL045C (Gene tree)
Gene ID: -
Gene Symbol: RPL8B
Alias: KRB1|SCL41
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 771
Position: chrXII:47859-48629
Accession: S000003968
RBP type: canonical RBP
Summary: Ribosomal 60S subunit protein L8B%3B required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit%3B depletion leads to a turnover of pre-rRNA%3B L8 binds to Domain I of 25S and 5.8 S rRNAs%3B mutation results in decreased amounts of free 60S subunits%3B homologous to mammalian ribosomal protein L7A%2C no bacterial homolog%3B RPL8B has a paralog%2C RPL8A%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLL045C_mRNA	Ribosomal_L7Ae	PF01248.26	7.1e-24	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl.PAR_CL & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLL045C_mRNA	-	771	-	YLL045C_mRNA	256 (aa)	-	P29453

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YLL045C	RPL8B	100	97.266	YHL033C	RPL8A	100	97.266

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLL045C	RPL8B	96	50.806	WBGene00004419	rpl-7A	95	51.181	Caenorhabditis_elegans
YLL045C	RPL8B	97	55.336	FBgn0014026	RpL7A	93	55.859	Drosophila_melanogaster