EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YLR022C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 753
Position: chrXII:184174-184926
Accession: S000004012
RBP type: canonical RBP
Summary: Guanine nucleotide exchange factor (GEF) for Ria1p%3B essential protein involved in ribosome maturation%3B with Ria1p%2C promotes release of Tif6p from 60S ribosomal subunits in the cytoplasm so that they can assemble with 40S subunits to generate mature ribosomes%3B ortholog of the human protein (SBDS) responsible for autosomal recessive Shwachman-Bodian-Diamond Syndrome%3B highly conserved across archaea and eukaryotes

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR022C_mRNA	SBDS	PF01172.18	3.1e-34	1	1
YLR022C_mRNA	SBDS_C	PF09377.10	3e-30	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR022C_mRNA	-	753	-	YLR022C_mRNA	250 (aa)	-	Q07953

Gene Model

Click here to download YLR022C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YLR022C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR022C	-	96	43.320	ENSG00000126524	SBDS	90	66.234	Homo_sapiens
YLR022C	-	96	43.496	ENSAPOG00000014285	sbds	96	43.496	Acanthochromis_polyacanthus
YLR022C	-	96	42.449	ENSAMEG00000018167	SBDS	96	43.673	Ailuropoda_melanoleuca
YLR022C	-	96	43.089	ENSACIG00000007308	sbds	96	43.089	Amphilophus_citrinellus
YLR022C	-	96	43.089	ENSAOCG00000016770	sbds	96	43.089	Amphiprion_ocellaris
YLR022C	-	96	43.496	ENSAPEG00000015897	sbds	96	43.496	Amphiprion_percula
YLR022C	-	96	43.902	ENSATEG00000006901	sbds	96	43.902	Anabas_testudineus
YLR022C	-	71	45.763	ENSANAG00000024342	-	95	56.627	Aotus_nancymaae
YLR022C	-	79	40.196	ENSANAG00000037501	-	95	40.594	Aotus_nancymaae
YLR022C	-	96	43.496	ENSACLG00000018750	sbds	96	43.496	Astatotilapia_calliptera
YLR022C	-	96	42.915	ENSAMXG00000005361	sbds	96	43.902	Astyanax_mexicanus
YLR022C	-	96	43.320	ENSBTAG00000004051	SBDS	96	44.082	Bos_taurus
YLR022C	-	91	41.631	WBGene00021063	sbds-1	88	41.631	Caenorhabditis_elegans
YLR022C	-	96	43.320	ENSCJAG00000041007	SBDS	96	44.082	Callithrix_jacchus
YLR022C	-	96	41.296	ENSCAFG00000010797	SBDS	96	42.510	Canis_familiaris
YLR022C	-	96	42.449	ENSCAFG00020005357	SBDS	96	43.673	Canis_lupus_dingo
YLR022C	-	96	43.320	ENSCHIG00000026854	SBDS	96	44.082	Capra_hircus
YLR022C	-	96	43.320	ENSTSYG00000033822	SBDS	96	44.082	Carlito_syrichta
YLR022C	-	62	34.783	ENSCAPG00000006634	SBDS	96	34.146	Cavia_aperea
YLR022C	-	96	43.320	ENSCPOG00000036143	SBDS	96	44.082	Cavia_porcellus
YLR022C	-	96	43.320	ENSCCAG00000020671	SBDS	94	60.714	Cebus_capucinus
YLR022C	-	96	43.320	ENSCATG00000039026	SBDS	96	44.082	Cercocebus_atys
YLR022C	-	65	35.185	ENSCLAG00000002113	-	94	31.950	Chinchilla_lanigera
YLR022C	-	96	43.320	ENSCLAG00000005721	-	96	44.082	Chinchilla_lanigera
YLR022C	-	96	43.320	ENSCSAG00000018275	SBDS	96	44.082	Chlorocebus_sabaeus
YLR022C	-	96	40.891	ENSCHOG00000003795	SBDS	96	41.633	Choloepus_hoffmanni
YLR022C	-	71	48.023	ENSCPBG00000014893	SBDS	96	42.683	Chrysemys_picta_bellii
YLR022C	-	99	41.502	ENSCSAVG00000011811	-	98	41.502	Ciona_savignyi
YLR022C	-	96	42.915	ENSCANG00000032368	SBDS	96	44.082	Colobus_angolensis_palliatus
YLR022C	-	62	34.783	ENSCGRG00001019886	Sbds	96	34.337	Cricetulus_griseus_chok1gshd
YLR022C	-	79	40.196	ENSCGRG00000009211	Sbds	95	40.686	Cricetulus_griseus_crigri
YLR022C	-	96	44.309	ENSCSEG00000005798	sbds	96	44.309	Cynoglossus_semilaevis
YLR022C	-	94	41.949	ENSCVAG00000001053	sbds	92	43.882	Cyprinodon_variegatus
YLR022C	-	96	45.528	ENSDARG00000027803	sbds	96	45.528	Danio_rerio
YLR022C	-	96	43.320	ENSDNOG00000041174	SBDS	96	44.082	Dasypus_novemcinctus
YLR022C	-	96	41.700	ENSDORG00000026218	Sbds	96	42.857	Dipodomys_ordii
YLR022C	-	89	45.982	FBgn0035714	CG8549	95	43.673	Drosophila_melanogaster
YLR022C	-	76	40.000	ENSEBUG00000015780	sbds	82	40.000	Eptatretus_burgeri
YLR022C	-	96	43.320	ENSEASG00005008821	SBDS	96	44.082	Equus_asinus_asinus
YLR022C	-	96	43.320	ENSECAG00000008202	SBDS	96	44.082	Equus_caballus
YLR022C	-	72	33.889	ENSEEUG00000004768	SBDS	96	32.161	Erinaceus_europaeus
YLR022C	-	96	43.496	ENSELUG00000008382	sbds	96	43.496	Esox_lucius
YLR022C	-	96	43.320	ENSFCAG00000022142	SBDS	96	43.673	Felis_catus
YLR022C	-	96	42.276	ENSFALG00000013808	SBDS	96	43.902	Ficedula_albicollis
YLR022C	-	96	43.320	ENSFDAG00000018947	-	96	44.082	Fukomys_damarensis
YLR022C	-	96	39.592	ENSFHEG00000000708	sbds	96	41.463	Fundulus_heteroclitus
YLR022C	-	96	42.276	ENSGMOG00000018356	sbds	95	42.276	Gadus_morhua
YLR022C	-	71	48.588	ENSGALG00000027989	SBDS	96	43.089	Gallus_gallus
YLR022C	-	89	41.410	ENSGAFG00000014204	sbds	96	41.410	Gambusia_affinis
YLR022C	-	96	41.870	ENSGACG00000012697	sbds	96	41.870	Gasterosteus_aculeatus
YLR022C	-	56	45.324	ENSGAGG00000022402	SBDS	94	39.904	Gopherus_agassizii
YLR022C	-	71	33.520	ENSGGOG00000040023	-	92	31.174	Gorilla_gorilla
YLR022C	-	96	43.496	ENSHBUG00000002660	sbds	96	43.496	Haplochromis_burtoni
YLR022C	-	96	43.673	ENSHGLG00000009671	SBDS	96	43.673	Heterocephalus_glaber_female
YLR022C	-	96	43.673	ENSHGLG00100011332	SBDS	96	43.673	Heterocephalus_glaber_male
YLR022C	-	96	43.089	ENSHCOG00000018606	sbds	96	43.089	Hippocampus_comes
YLR022C	-	96	41.463	ENSIPUG00000006536	sbds	96	43.089	Ictalurus_punctatus
YLR022C	-	96	42.449	ENSJJAG00000012033	-	96	42.449	Jaculus_jaculus
YLR022C	-	96	43.496	ENSKMAG00000018542	sbds	96	43.496	Kryptolebias_marmoratus
YLR022C	-	96	43.089	ENSLBEG00000016687	sbds	96	43.089	Labrus_bergylta
YLR022C	-	96	36.400	ENSLACG00000018916	SBDS	96	36.400	Latimeria_chalumnae
YLR022C	-	96	42.041	ENSLOCG00000004073	sbds	96	43.902	Lepisosteus_oculatus
YLR022C	-	96	42.857	ENSLAFG00000008763	SBDS	96	43.673	Loxodonta_africana
YLR022C	-	96	43.320	ENSMFAG00000032620	SBDS	96	44.082	Macaca_fascicularis
YLR022C	-	96	43.320	ENSMMUG00000045653	SBDS	96	44.082	Macaca_mulatta
YLR022C	-	96	43.320	ENSMNEG00000031523	SBDS	96	44.082	Macaca_nemestrina
YLR022C	-	61	47.771	ENSMLEG00000036826	SBDS	75	47.771	Mandrillus_leucophaeus
YLR022C	-	96	43.089	ENSMAMG00000016062	sbds	96	43.089	Mastacembelus_armatus
YLR022C	-	96	43.496	ENSMZEG00005024385	sbds	96	43.496	Maylandia_zebra
YLR022C	-	71	48.588	ENSMGAG00000002119	SBDS	96	43.089	Meleagris_gallopavo
YLR022C	-	66	48.780	ENSMAUG00000022214	-	72	48.780	Mesocricetus_auratus
YLR022C	-	96	43.320	ENSMICG00000014366	SBDS	81	66.234	Microcebus_murinus
YLR022C	-	96	42.683	ENSMOCG00000011739	Sbds	96	44.082	Microtus_ochrogaster
YLR022C	-	72	46.667	ENSMMOG00000005061	sbds	71	46.667	Mola_mola
YLR022C	-	96	42.041	ENSMODG00000006644	SBDS	96	43.902	Monodelphis_domestica
YLR022C	-	94	44.304	ENSMALG00000010219	sbds	92	44.304	Monopterus_albus
YLR022C	-	96	41.870	MGP_CAROLIEiJ_G0027800	Sbds	100	55.814	Mus_caroli
YLR022C	-	96	41.463	ENSMUSG00000025337	Sbds	100	55.814	Mus_musculus
YLR022C	-	96	41.870	MGP_PahariEiJ_G0024384	Sbds	100	55.814	Mus_pahari
YLR022C	-	96	41.463	MGP_SPRETEiJ_G0028798	Sbds	100	55.814	Mus_spretus
YLR022C	-	64	31.902	ENSMPUG00000016192	SBDS	90	34.356	Mustela_putorius_furo
YLR022C	-	69	34.637	ENSMLUG00000013575	SBDS	94	35.028	Myotis_lucifugus
YLR022C	-	96	42.276	ENSNGAG00000012093	Sbds	96	43.673	Nannospalax_galili
YLR022C	-	96	43.496	ENSNBRG00000017027	sbds	96	43.496	Neolamprologus_brichardi
YLR022C	-	96	43.320	ENSNLEG00000013288	SBDS	91	57.955	Nomascus_leucogenys
YLR022C	-	96	41.463	ENSOPRG00000008721	SBDS	96	42.857	Ochotona_princeps
YLR022C	-	96	32.245	ENSODEG00000000137	-	80	34.286	Octodon_degus
YLR022C	-	96	40.081	ENSODEG00000019253	-	80	40.816	Octodon_degus
YLR022C	-	70	37.714	ENSODEG00000001116	-	92	34.454	Octodon_degus
YLR022C	-	96	43.089	ENSONIG00000005874	sbds	96	43.089	Oreochromis_niloticus
YLR022C	-	57	47.552	ENSOANG00000007674	-	95	41.872	Ornithorhynchus_anatinus
YLR022C	-	96	42.510	ENSOCUG00000003170	SBDS	96	43.265	Oryctolagus_cuniculus
YLR022C	-	96	41.224	ENSORLG00000023489	sbds	98	42.400	Oryzias_latipes
YLR022C	-	96	42.041	ENSORLG00020019282	sbds	98	43.028	Oryzias_latipes_hni
YLR022C	-	96	42.041	ENSORLG00015008005	sbds	98	43.028	Oryzias_latipes_hsok
YLR022C	-	96	44.309	ENSOMEG00000022747	sbds	96	44.309	Oryzias_melastigma
YLR022C	-	96	42.915	ENSOGAG00000009011	-	96	43.673	Otolemur_garnettii
YLR022C	-	92	37.607	ENSOGAG00000015036	-	91	37.607	Otolemur_garnettii
YLR022C	-	96	43.320	ENSOARG00000010609	SBDS	96	44.082	Ovis_aries
YLR022C	-	71	49.718	ENSPPAG00000043889	-	96	43.673	Pan_paniscus
YLR022C	-	96	43.320	ENSPPRG00000002307	SBDS	96	43.673	Panthera_pardus
YLR022C	-	96	43.320	ENSPTIG00000021308	SBDS	96	43.673	Panthera_tigris_altaica
YLR022C	-	71	36.158	ENSPTRG00000047744	-	95	33.469	Pan_troglodytes
YLR022C	-	71	36.158	ENSPTRG00000050835	-	95	33.469	Pan_troglodytes
YLR022C	-	96	43.320	ENSPTRG00000019254	SBDS	96	44.082	Pan_troglodytes
YLR022C	-	71	49.718	ENSPTRG00000048174	-	88	46.269	Pan_troglodytes
YLR022C	-	96	43.320	ENSPANG00000004078	SBDS	96	43.673	Papio_anubis
YLR022C	-	96	42.041	ENSPKIG00000006489	sbds	96	43.089	Paramormyrops_kingsleyae
YLR022C	-	79	38.725	ENSPSIG00000014603	SBDS	94	40.594	Pelodiscus_sinensis
YLR022C	-	96	43.902	ENSPMGG00000004246	sbds	96	43.902	Periophthalmus_magnuspinnatus
YLR022C	-	96	42.276	ENSPEMG00000008728	Sbds	96	43.673	Peromyscus_maniculatus_bairdii
YLR022C	-	96	40.726	ENSPCIG00000029718	SBDS	96	42.683	Phascolarctos_cinereus
YLR022C	-	96	42.683	ENSPFOG00000015837	sbds	96	42.683	Poecilia_formosa
YLR022C	-	96	42.683	ENSPLAG00000003641	sbds	96	42.683	Poecilia_latipinna
YLR022C	-	96	42.683	ENSPMEG00000019483	sbds	96	42.683	Poecilia_mexicana
YLR022C	-	96	42.683	ENSPREG00000018758	sbds	96	42.683	Poecilia_reticulata
YLR022C	-	96	43.320	ENSPPYG00000017513	SBDS	96	44.082	Pongo_abelii
YLR022C	-	96	43.320	ENSPCOG00000021098	SBDS	81	66.234	Propithecus_coquereli
YLR022C	-	96	44.130	ENSPVAG00000009369	SBDS	96	44.130	Pteropus_vampyrus
YLR022C	-	96	43.089	ENSPNYG00000022403	sbds	96	43.089	Pundamilia_nyererei
YLR022C	-	96	43.496	ENSPNAG00000001120	sbds	96	43.496	Pygocentrus_nattereri
YLR022C	-	96	41.870	ENSRNOG00000000888	Sbds	96	42.857	Rattus_norvegicus
YLR022C	-	96	43.320	ENSRBIG00000035557	SBDS	96	44.082	Rhinopithecus_bieti
YLR022C	-	96	43.320	ENSRROG00000040842	-	96	44.082	Rhinopithecus_roxellana
YLR022C	-	71	45.763	ENSRROG00000041986	-	64	60.759	Rhinopithecus_roxellana
YLR022C	-	89	41.921	ENSSBOG00000022460	SBDS	95	42.731	Saimiri_boliviensis_boliviensis
YLR022C	-	96	35.102	ENSSHAG00000010263	SBDS	96	36.585	Sarcophilus_harrisii
YLR022C	-	96	42.449	ENSSFOG00015001108	sbds	96	43.902	Scleropages_formosus
YLR022C	-	96	43.089	ENSSMAG00000020506	sbds	96	43.089	Scophthalmus_maximus
YLR022C	-	96	42.276	ENSSDUG00000001528	sbds	96	42.276	Seriola_dumerili
YLR022C	-	96	42.276	ENSSLDG00000003659	sbds	96	42.276	Seriola_lalandi_dorsalis
YLR022C	-	61	49.673	ENSSARG00000013132	-	100	49.673	Sorex_araneus
YLR022C	-	96	41.633	ENSSPUG00000002699	SBDS	97	42.972	Sphenodon_punctatus
YLR022C	-	96	43.496	ENSSPAG00000016419	sbds	96	37.652	Stegastes_partitus
YLR022C	-	96	43.320	ENSSSCG00000007732	SBDS	96	44.082	Sus_scrofa
YLR022C	-	94	43.460	ENSTRUG00000021443	sbds	92	43.460	Takifugu_rubripes
YLR022C	-	94	42.616	ENSTNIG00000019000	sbds	92	42.616	Tetraodon_nigroviridis
YLR022C	-	71	43.503	ENSTBEG00000001178	SBDS	95	40.796	Tupaia_belangeri
YLR022C	-	96	42.449	ENSUAMG00000001326	SBDS	96	43.673	Ursus_americanus
YLR022C	-	96	42.449	ENSUMAG00000015353	SBDS	96	43.673	Ursus_maritimus
YLR022C	-	96	42.449	ENSVVUG00000016478	SBDS	96	43.673	Vulpes_vulpes
YLR022C	-	96	45.306	ENSXETG00000010093	sbds	96	45.122	Xenopus_tropicalis
YLR022C	-	79	46.465	ENSXCOG00000010639	sbds	86	46.465	Xiphophorus_couchianus
YLR022C	-	96	42.683	ENSXMAG00000006065	sbds	96	42.683	Xiphophorus_maculatus