EuRBPDB

Description

Ensembl ID: YLR061W (Gene tree)
Gene ID: -
Gene Symbol: RPL22A
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 755
Position: chrXII:263194-263948
Accession: S000004051
RBP type: canonical RBP
Summary: Ribosomal 60S subunit protein L22A%3B required for translation of long 5' UTR of IME1 mRNA and meiotic entry%3B required for the oxidative stress response%2C pseudohyphal and invasive growth%3B homologous to mammalian ribosomal protein L22%2C no bacterial homolog%3B RPL22A has a paralog%2C RPL22B%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR061W_mRNA	Ribosomal_L22e	PF01776.17	2.7e-40	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR061W_mRNA	-	366	-	YLR061W_mRNA	121 (aa)	-	P05749

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YLR061W	RPL22A	93	85.714	YFL034C-A	RPL22B	92	85.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR061W	RPL22A	99	40.496	WBGene00004434	rpl-22	85	40.541	Caenorhabditis_elegans
YLR061W	RPL22A	70	42.529	ENSEBUG00000012931	-	91	42.529	Eptatretus_burgeri
YLR061W	RPL22A	87	48.113	ENSSLDG00000005943	-	89	46.847	Seriola_lalandi_dorsalis