EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YLR116W (Gene tree)
Gene ID: -
Gene Symbol: MSL5
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1431
Position: chrXII:380822-382252
Accession: S000004106
RBP type: canonical RBP
Summary: Component of commitment complex%3B which defines first step in splicing pathway%3B essential protein that interacts with Mud2p and Prp40p%2C forming a bridge between the intron ends%3B also involved in nuclear retention of pre-mRNA%3B relocalizes to the cytosol in response to hypoxia

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR116W_mRNA	KH_1	PF00013.29	5.5e-07	1	1
YLR116W_mRNA	zf-CCHC	PF00098.23	1.7e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR116W_mRNA	-	1431	-	YLR116W_mRNA	476 (aa)	-	Q12186

Gene Model

Click here to download YLR116W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YLR116W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR116W	MSL5	61	43.182	ENSAMEG00000017828	SF1	64	37.674	Ailuropoda_melanoleuca
YLR116W	MSL5	92	36.526	ENSANAG00000026664	-	86	38.693	Aotus_nancymaae
YLR116W	MSL5	55	41.667	ENSANAG00000022607	-	66	40.357	Aotus_nancymaae
YLR116W	MSL5	56	44.565	ENSACLG00000007633	sf1	63	36.792	Astatotilapia_calliptera
YLR116W	MSL5	61	43.182	ENSBTAG00000001035	SF1	68	37.674	Bos_taurus
YLR116W	MSL5	61	43.182	ENSCJAG00000002780	SF1	61	37.819	Callithrix_jacchus
YLR116W	MSL5	61	43.182	ENSCHIG00000025867	SF1	53	43.421	Capra_hircus
YLR116W	MSL5	60	43.878	ENSTSYG00000033618	SF1	82	43.878	Carlito_syrichta
YLR116W	MSL5	61	43.182	ENSCAPG00000010762	SF1	52	43.421	Cavia_aperea
YLR116W	MSL5	61	43.182	ENSCPOG00000012290	SF1	54	43.421	Cavia_porcellus
YLR116W	MSL5	61	41.946	ENSCCAG00000023781	-	64	41.118	Cebus_capucinus
YLR116W	MSL5	61	43.182	ENSCCAG00000037881	SF1	86	38.575	Cebus_capucinus
YLR116W	MSL5	61	43.182	ENSCATG00000011564	SF1	70	43.182	Cercocebus_atys
YLR116W	MSL5	61	43.182	ENSCSAG00000007258	SF1	53	43.421	Chlorocebus_sabaeus
YLR116W	MSL5	66	38.941	ENSCING00000005564	-	69	37.293	Ciona_intestinalis
YLR116W	MSL5	90	35.189	ENSCSAVG00000009055	-	56	44.309	Ciona_savignyi
YLR116W	MSL5	61	43.182	ENSCANG00000042201	SF1	70	43.182	Colobus_angolensis_palliatus
YLR116W	MSL5	61	43.182	ENSCGRG00001003677	Sf1	51	43.421	Cricetulus_griseus_chok1gshd
YLR116W	MSL5	61	43.182	ENSCGRG00000001708	Sf1	54	43.421	Cricetulus_griseus_crigri
YLR116W	MSL5	66	41.071	ENSCVAG00000001670	sf1	54	39.542	Cyprinodon_variegatus
YLR116W	MSL5	56	44.689	ENSDARG00000008188	sf1	60	38.983	Danio_rerio
YLR116W	MSL5	61	43.182	ENSDNOG00000001282	SF1	53	43.421	Dasypus_novemcinctus
YLR116W	MSL5	61	43.182	ENSDORG00000016334	Sf1	64	37.674	Dipodomys_ordii
YLR116W	MSL5	61	43.182	ENSEASG00005018272	SF1	53	43.421	Equus_asinus_asinus
YLR116W	MSL5	61	43.182	ENSECAG00000024544	SF1	53	43.421	Equus_caballus
YLR116W	MSL5	54	44.280	ENSEEUG00000001058	SF1	65	44.569	Erinaceus_europaeus
YLR116W	MSL5	61	43.182	ENSFCAG00000012231	SF1	62	37.819	Felis_catus
YLR116W	MSL5	61	43.182	ENSFDAG00000009833	SF1	52	43.421	Fukomys_damarensis
YLR116W	MSL5	56	44.203	ENSFHEG00000022656	sf1	52	38.356	Fundulus_heteroclitus
YLR116W	MSL5	58	42.955	ENSGAFG00000019284	sf1	75	38.631	Gambusia_affinis
YLR116W	MSL5	61	43.182	ENSHGLG00000009541	SF1	51	43.421	Heterocephalus_glaber_female
YLR116W	MSL5	58	42.612	ENSHGLG00100008076	-	58	42.612	Heterocephalus_glaber_male
YLR116W	MSL5	57	42.907	ENSHGLG00100008255	-	87	35.141	Heterocephalus_glaber_male
YLR116W	MSL5	61	43.182	ENSHGLG00100013879	-	74	38.257	Heterocephalus_glaber_male
YLR116W	MSL5	56	44.565	ENSKMAG00000005854	sf1	62	36.597	Kryptolebias_marmoratus
YLR116W	MSL5	60	40.273	ENSLACG00000018493	SF1	51	40.484	Latimeria_chalumnae
YLR116W	MSL5	61	43.182	ENSLAFG00000007201	SF1	64	37.674	Loxodonta_africana
YLR116W	MSL5	61	43.182	ENSMFAG00000033122	SF1	70	43.182	Macaca_fascicularis
YLR116W	MSL5	61	43.182	ENSMMUG00000022606	SF1	89	38.575	Macaca_mulatta
YLR116W	MSL5	61	43.182	ENSMNEG00000037901	SF1	70	43.182	Macaca_nemestrina
YLR116W	MSL5	61	43.182	ENSMLEG00000040706	SF1	70	43.421	Mandrillus_leucophaeus
YLR116W	MSL5	61	43.182	ENSMAUG00000014064	Sf1	51	43.421	Mesocricetus_auratus
YLR116W	MSL5	61	43.366	ENSMICG00000001202	SF1	86	38.725	Microcebus_murinus
YLR116W	MSL5	61	43.182	ENSMOCG00000022038	Sf1	51	43.421	Microtus_ochrogaster
YLR116W	MSL5	92	35.778	ENSMODG00000029407	SF1	90	37.559	Monodelphis_domestica
YLR116W	MSL5	58	41.812	ENSMALG00000020521	sf1	50	40.594	Monopterus_albus
YLR116W	MSL5	61	43.182	MGP_CAROLIEiJ_G0022607	Sf1	97	45.788	Mus_caroli
YLR116W	MSL5	61	43.182	ENSMUSG00000024949	Sf1	97	45.788	Mus_musculus
YLR116W	MSL5	61	43.182	MGP_PahariEiJ_G0014101	Sf1	97	45.788	Mus_pahari
YLR116W	MSL5	61	43.182	MGP_SPRETEiJ_G0023518	Sf1	97	45.788	Mus_spretus
YLR116W	MSL5	61	41.447	ENSMLUG00000029800	-	50	41.447	Myotis_lucifugus
YLR116W	MSL5	61	43.182	ENSNGAG00000005550	Sf1	51	43.421	Nannospalax_galili
YLR116W	MSL5	56	44.565	ENSNBRG00000017606	sf1	62	37.116	Neolamprologus_brichardi
YLR116W	MSL5	61	43.182	ENSNLEG00000005236	-	70	43.182	Nomascus_leucogenys
YLR116W	MSL5	61	43.182	ENSMEUG00000013424	SF1	55	43.421	Notamacropus_eugenii
YLR116W	MSL5	54	44.280	ENSOPRG00000005008	SF1	52	44.569	Ochotona_princeps
YLR116W	MSL5	69	39.276	ENSOMEG00000005210	sf1	61	36.659	Oryzias_melastigma
YLR116W	MSL5	61	43.182	ENSOARG00000009166	SF1	72	37.647	Ovis_aries
YLR116W	MSL5	61	43.182	ENSPPAG00000002799	-	87	38.575	Pan_paniscus
YLR116W	MSL5	61	43.182	ENSPPRG00000013566	SF1	61	37.587	Panthera_pardus
YLR116W	MSL5	61	43.182	ENSPTIG00000016141	SF1	53	43.421	Panthera_tigris_altaica
YLR116W	MSL5	61	43.182	ENSPTRG00000003846	SF1	70	43.182	Pan_troglodytes
YLR116W	MSL5	61	43.182	ENSPANG00000020754	SF1	70	43.182	Papio_anubis
YLR116W	MSL5	50	43.874	ENSPKIG00000012116	sf1	62	44.223	Paramormyrops_kingsleyae
YLR116W	MSL5	61	43.182	ENSPEMG00000010463	Sf1	51	43.421	Peromyscus_maniculatus_bairdii
YLR116W	MSL5	58	42.955	ENSPFOG00000013683	sf1	67	37.857	Poecilia_formosa
YLR116W	MSL5	56	44.203	ENSPLAG00000018076	sf1	54	38.378	Poecilia_latipinna
YLR116W	MSL5	56	44.203	ENSPMEG00000005726	sf1	63	36.977	Poecilia_mexicana
YLR116W	MSL5	61	43.182	ENSPPYG00000003098	-	55	43.421	Pongo_abelii
YLR116W	MSL5	61	43.182	ENSPCAG00000013631	SF1	62	37.587	Procavia_capensis
YLR116W	MSL5	61	43.366	ENSPCOG00000027546	SF1	86	38.725	Propithecus_coquereli
YLR116W	MSL5	61	43.182	ENSPVAG00000016938	SF1	62	37.587	Pteropus_vampyrus
YLR116W	MSL5	56	44.322	ENSPNAG00000013072	sf1	51	38.418	Pygocentrus_nattereri
YLR116W	MSL5	61	43.182	ENSRBIG00000042818	SF1	86	39.098	Rhinopithecus_bieti
YLR116W	MSL5	61	43.182	ENSRROG00000045655	SF1	88	38.710	Rhinopithecus_roxellana
YLR116W	MSL5	54	42.164	ENSSBOG00000022267	-	87	34.509	Saimiri_boliviensis_boliviensis
YLR116W	MSL5	60	44.637	ENSSHAG00000006841	SF1	51	44.912	Sarcophilus_harrisii
YLR116W	MSL5	56	44.043	ENSSMAG00000007549	sf1	52	38.655	Scophthalmus_maximus
YLR116W	MSL5	61	40.065	ENSSARG00000008180	SF1	56	39.934	Sorex_araneus
YLR116W	MSL5	61	43.182	ENSSSCG00000013021	SF1	53	43.421	Sus_scrofa
YLR116W	MSL5	68	34.493	ENSTNIG00000004820	sf1	75	32.452	Tetraodon_nigroviridis
YLR116W	MSL5	61	40.584	ENSTTRG00000008857	SF1	53	40.789	Tursiops_truncatus
YLR116W	MSL5	61	43.182	ENSUMAG00000007268	SF1	77	37.647	Ursus_maritimus
YLR116W	MSL5	61	43.182	ENSVVUG00000028585	SF1	53	43.421	Vulpes_vulpes
YLR116W	MSL5	56	45.487	ENSXETG00000008434	sf1	73	37.500	Xenopus_tropicalis
YLR116W	MSL5	63	41.325	ENSXCOG00000003704	sf1	79	38.084	Xiphophorus_couchianus
YLR116W	MSL5	56	44.203	ENSXMAG00000007822	sf1	62	36.830	Xiphophorus_maculatus