EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YLR117C (Gene tree)
Gene ID: -
Gene Symbol: CLF1
Alias: NTC77|SYF3
Full Name: Member of the NineTeen Complex (NTC)%3B this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2%2C U5%2C and U6 snRNAs%3B homolog of Drosophila crooked neck protein%3B interacts with U1 snRNP proteins
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Minus strand
Length: 2064 bases
Position: chrXII:382471-384534
Accession: S000004107
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR117C_mRNA	HAT	PF02184.16	2.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR117C_mRNA	-	2064	-	YLR117C_mRNA	687 (aa)	-	Q12309

Gene Model

Click here to download YLR117C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YLR117C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR117C	CLF1	99	37.771	ENSG00000101343	CRNKL1	94	37.681	Homo_sapiens
YLR117C	CLF1	99	36.812	ENSAPOG00000009705	crnkl1	93	36.430	Acanthochromis_polyacanthus
YLR117C	CLF1	99	37.771	ENSAMEG00000000270	CRNKL1	78	37.681	Ailuropoda_melanoleuca
YLR117C	CLF1	99	36.957	ENSACIG00000015267	crnkl1	86	36.865	Amphilophus_citrinellus
YLR117C	CLF1	99	36.812	ENSAOCG00000021964	crnkl1	86	36.812	Amphiprion_ocellaris
YLR117C	CLF1	99	36.812	ENSAPEG00000015041	crnkl1	86	36.812	Amphiprion_percula
YLR117C	CLF1	99	36.469	ENSATEG00000001068	crnkl1	85	36.469	Anabas_testudineus
YLR117C	CLF1	99	38.177	ENSAPLG00000013105	CRNKL1	96	38.088	Anas_platyrhynchos
YLR117C	CLF1	99	37.826	ENSACAG00000005284	CRNKL1	94	37.736	Anolis_carolinensis
YLR117C	CLF1	93	37.519	ENSANAG00000024889	CRNKL1	96	37.519	Aotus_nancymaae
YLR117C	CLF1	99	36.705	ENSACLG00000010813	crnkl1	86	36.614	Astatotilapia_calliptera
YLR117C	CLF1	99	36.919	ENSAMXG00000018334	crnkl1	87	36.865	Astyanax_mexicanus
YLR117C	CLF1	99	37.916	ENSBTAG00000008472	CRNKL1	93	37.826	Bos_taurus
YLR117C	CLF1	98	36.550	WBGene00019762	M03F8.3	86	36.297	Caenorhabditis_elegans
YLR117C	CLF1	99	37.627	ENSCJAG00000005393	CRNKL1	94	37.536	Callithrix_jacchus
YLR117C	CLF1	99	37.916	ENSCAFG00000005333	CRNKL1	89	37.826	Canis_familiaris
YLR117C	CLF1	99	37.916	ENSCAFG00020027488	CRNKL1	94	37.826	Canis_lupus_dingo
YLR117C	CLF1	99	37.771	ENSCHIG00000013171	CRNKL1	93	37.681	Capra_hircus
YLR117C	CLF1	99	37.627	ENSTSYG00000004197	CRNKL1	94	37.536	Carlito_syrichta
YLR117C	CLF1	93	38.318	ENSCAPG00000010501	CRNKL1	96	38.222	Cavia_aperea
YLR117C	CLF1	99	37.681	ENSCPOG00000004418	CRNKL1	94	37.591	Cavia_porcellus
YLR117C	CLF1	99	37.627	ENSCCAG00000027037	CRNKL1	94	37.536	Cebus_capucinus
YLR117C	CLF1	99	37.627	ENSCATG00000034247	CRNKL1	94	37.536	Cercocebus_atys
YLR117C	CLF1	99	37.826	ENSCLAG00000013859	CRNKL1	94	37.736	Chinchilla_lanigera
YLR117C	CLF1	99	37.627	ENSCSAG00000011434	CRNKL1	94	37.536	Chlorocebus_sabaeus
YLR117C	CLF1	99	38.061	ENSCHOG00000006371	CRNKL1	79	37.971	Choloepus_hoffmanni
YLR117C	CLF1	99	38.261	ENSCPBG00000023501	CRNKL1	94	38.171	Chrysemys_picta_bellii
YLR117C	CLF1	98	37.775	ENSCING00000002709	-	93	37.683	Ciona_intestinalis
YLR117C	CLF1	99	37.627	ENSCANG00000038789	CRNKL1	94	37.536	Colobus_angolensis_palliatus
YLR117C	CLF1	99	37.771	ENSCGRG00001001115	-	94	37.681	Cricetulus_griseus_chok1gshd
YLR117C	CLF1	99	37.771	ENSCGRG00001000687	-	94	37.681	Cricetulus_griseus_chok1gshd
YLR117C	CLF1	99	37.771	ENSCGRG00000007854	Crnkl1	94	37.681	Cricetulus_griseus_crigri
YLR117C	CLF1	99	36.903	ENSCSEG00000005594	crnkl1	82	36.903	Cynoglossus_semilaevis
YLR117C	CLF1	99	36.758	ENSCVAG00000015172	crnkl1	87	36.758	Cyprinodon_variegatus
YLR117C	CLF1	98	36.880	ENSDARG00000007901	crnkl1	86	36.865	Danio_rerio
YLR117C	CLF1	99	37.771	ENSDNOG00000016226	CRNKL1	90	37.681	Dasypus_novemcinctus
YLR117C	CLF1	98	36.934	ENSDORG00000023724	-	95	36.934	Dipodomys_ordii
YLR117C	CLF1	98	36.642	ENSDORG00000030174	-	95	36.642	Dipodomys_ordii
YLR117C	CLF1	99	36.676	ENSDORG00000000394	-	94	36.585	Dipodomys_ordii
YLR117C	CLF1	99	37.246	FBgn0000377	crn	93	37.155	Drosophila_melanogaster
YLR117C	CLF1	99	33.285	ENSETEG00000003711	CRNKL1	73	37.500	Echinops_telfairi
YLR117C	CLF1	99	32.336	ENSEBUG00000013461	crnkl1	90	32.302	Eptatretus_burgeri
YLR117C	CLF1	99	37.916	ENSEASG00005002072	CRNKL1	94	37.826	Equus_asinus_asinus
YLR117C	CLF1	99	37.916	ENSECAG00000022215	CRNKL1	94	37.826	Equus_caballus
YLR117C	CLF1	99	37.192	ENSEEUG00000000413	CRNKL1	87	36.957	Erinaceus_europaeus
YLR117C	CLF1	99	37.192	ENSELUG00000015424	crnkl1	92	37.101	Esox_lucius
YLR117C	CLF1	99	37.916	ENSFCAG00000000714	CRNKL1	94	37.826	Felis_catus
YLR117C	CLF1	99	37.627	ENSFALG00000004611	CRNKL1	96	37.391	Ficedula_albicollis
YLR117C	CLF1	99	37.826	ENSFDAG00000000604	CRNKL1	94	37.736	Fukomys_damarensis
YLR117C	CLF1	99	37.192	ENSFHEG00000013163	crnkl1	84	37.192	Fundulus_heteroclitus
YLR117C	CLF1	99	36.941	ENSGMOG00000007609	crnkl1	90	36.941	Gadus_morhua
YLR117C	CLF1	99	37.971	ENSGALG00000008429	CRNKL1	94	37.881	Gallus_gallus
YLR117C	CLF1	99	37.048	ENSGAFG00000014249	crnkl1	85	36.957	Gambusia_affinis
YLR117C	CLF1	99	37.320	ENSGACG00000011852	crnkl1	87	37.229	Gasterosteus_aculeatus
YLR117C	CLF1	94	38.998	ENSGAGG00000021233	CRNKL1	96	38.567	Gopherus_agassizii
YLR117C	CLF1	99	37.771	ENSGGOG00000014176	CRNKL1	94	37.681	Gorilla_gorilla
YLR117C	CLF1	99	36.705	ENSHBUG00000005246	crnkl1	86	36.614	Haplochromis_burtoni
YLR117C	CLF1	99	37.826	ENSHGLG00000010856	CRNKL1	94	37.736	Heterocephalus_glaber_female
YLR117C	CLF1	99	37.826	ENSHGLG00100011521	CRNKL1	94	37.736	Heterocephalus_glaber_male
YLR117C	CLF1	99	36.812	ENSHCOG00000006420	crnkl1	93	36.720	Hippocampus_comes
YLR117C	CLF1	99	36.575	ENSIPUG00000006751	crnkl1	90	36.522	Ictalurus_punctatus
YLR117C	CLF1	98	34.107	ENSIPUG00000006836	-	94	34.058	Ictalurus_punctatus
YLR117C	CLF1	99	37.391	ENSSTOG00000014747	CRNKL1	94	37.300	Ictidomys_tridecemlineatus
YLR117C	CLF1	99	36.917	ENSJJAG00000016926	Crnkl1	94	36.827	Jaculus_jaculus
YLR117C	CLF1	99	37.771	ENSKMAG00000003620	crnkl1	83	37.771	Kryptolebias_marmoratus
YLR117C	CLF1	82	31.864	ENSLBEG00000003543	crnkl1	86	30.303	Labrus_bergylta
YLR117C	CLF1	99	37.971	ENSLACG00000001129	CRNKL1	95	37.881	Latimeria_chalumnae
YLR117C	CLF1	99	36.919	ENSLOCG00000016889	crnkl1	90	36.865	Lepisosteus_oculatus
YLR117C	CLF1	99	38.171	ENSLAFG00000004512	CRNKL1	94	37.971	Loxodonta_africana
YLR117C	CLF1	99	37.627	ENSMFAG00000039893	CRNKL1	94	37.536	Macaca_fascicularis
YLR117C	CLF1	99	37.627	ENSMMUG00000007709	CRNKL1	94	37.536	Macaca_mulatta
YLR117C	CLF1	99	37.627	ENSMNEG00000037490	CRNKL1	94	37.536	Macaca_nemestrina
YLR117C	CLF1	99	37.627	ENSMLEG00000034885	CRNKL1	94	37.536	Mandrillus_leucophaeus
YLR117C	CLF1	99	36.469	ENSMAMG00000008757	crnkl1	85	36.377	Mastacembelus_armatus
YLR117C	CLF1	99	36.705	ENSMZEG00005022345	crnkl1	86	36.614	Maylandia_zebra
YLR117C	CLF1	99	38.061	ENSMGAG00000003452	CRNKL1	89	37.971	Meleagris_gallopavo
YLR117C	CLF1	99	37.771	ENSMAUG00000020764	Crnkl1	94	37.681	Mesocricetus_auratus
YLR117C	CLF1	99	37.627	ENSMICG00000006048	CRNKL1	94	37.536	Microcebus_murinus
YLR117C	CLF1	93	37.710	ENSMOCG00000000681	-	91	37.615	Microtus_ochrogaster
YLR117C	CLF1	93	37.616	ENSMMOG00000017601	crnkl1	93	37.616	Mola_mola
YLR117C	CLF1	99	36.895	ENSMODG00000005961	-	93	36.805	Monodelphis_domestica
YLR117C	CLF1	99	38.061	ENSMODG00000010857	-	94	37.971	Monodelphis_domestica
YLR117C	CLF1	99	31.907	ENSMALG00000011211	crnkl1	84	31.548	Monopterus_albus
YLR117C	CLF1	99	37.627	MGP_CAROLIEiJ_G0024394	Crnkl1	94	37.536	Mus_caroli
YLR117C	CLF1	99	37.627	ENSMUSG00000001767	Crnkl1	94	37.536	Mus_musculus
YLR117C	CLF1	99	37.246	MGP_PahariEiJ_G0025838	Crnkl1	94	37.155	Mus_pahari
YLR117C	CLF1	99	37.627	MGP_SPRETEiJ_G0025312	Crnkl1	94	37.536	Mus_spretus
YLR117C	CLF1	99	37.916	ENSMPUG00000001226	CRNKL1	94	37.826	Mustela_putorius_furo
YLR117C	CLF1	99	38.150	ENSMLUG00000016513	CRNKL1	84	38.061	Myotis_lucifugus
YLR117C	CLF1	99	36.790	ENSNGAG00000023097	Crnkl1	94	36.700	Nannospalax_galili
YLR117C	CLF1	99	36.705	ENSNBRG00000007867	crnkl1	86	36.614	Neolamprologus_brichardi
YLR117C	CLF1	99	36.179	ENSNLEG00000009862	CRNKL1	94	36.087	Nomascus_leucogenys
YLR117C	CLF1	99	38.061	ENSMEUG00000012167	-	97	37.971	Notamacropus_eugenii
YLR117C	CLF1	99	38.006	ENSMEUG00000002361	-	94	37.916	Notamacropus_eugenii
YLR117C	CLF1	99	37.681	ENSODEG00000012175	CRNKL1	94	37.591	Octodon_degus
YLR117C	CLF1	99	36.850	ENSONIG00000018728	crnkl1	86	36.758	Oreochromis_niloticus
YLR117C	CLF1	98	37.645	ENSOCUG00000015484	CRNKL1	78	37.536	Oryctolagus_cuniculus
YLR117C	CLF1	99	38.116	ENSORLG00000017240	crnkl1	91	36.494	Oryzias_latipes
YLR117C	CLF1	99	37.826	ENSORLG00020001742	crnkl1	87	37.826	Oryzias_latipes_hni
YLR117C	CLF1	99	37.971	ENSORLG00015019564	crnkl1	86	37.971	Oryzias_latipes_hsok
YLR117C	CLF1	99	37.681	ENSOMEG00000019895	crnkl1	86	37.591	Oryzias_melastigma
YLR117C	CLF1	99	37.482	ENSOGAG00000011544	CRNKL1	94	37.391	Otolemur_garnettii
YLR117C	CLF1	99	38.061	ENSOARG00000002150	CRNKL1	84	37.971	Ovis_aries
YLR117C	CLF1	99	37.482	ENSPPAG00000027847	CRNKL1	78	37.391	Pan_paniscus
YLR117C	CLF1	99	37.916	ENSPPRG00000001955	CRNKL1	94	37.826	Panthera_pardus
YLR117C	CLF1	99	37.916	ENSPTIG00000007393	CRNKL1	94	37.826	Panthera_tigris_altaica
YLR117C	CLF1	99	37.771	ENSPTRG00000030609	CRNKL1	94	37.681	Pan_troglodytes
YLR117C	CLF1	99	37.627	ENSPANG00000017420	CRNKL1	94	37.536	Papio_anubis
YLR117C	CLF1	98	35.838	ENSPKIG00000017093	crnkl1	84	35.827	Paramormyrops_kingsleyae
YLR117C	CLF1	99	38.696	ENSPSIG00000012705	CRNKL1	94	38.607	Pelodiscus_sinensis
YLR117C	CLF1	99	35.549	ENSPMGG00000006263	crnkl1	92	35.456	Periophthalmus_magnuspinnatus
YLR117C	CLF1	99	37.771	ENSPEMG00000000073	-	94	37.681	Peromyscus_maniculatus_bairdii
YLR117C	CLF1	99	37.085	ENSPMAG00000002250	crnkl1	94	36.994	Petromyzon_marinus
YLR117C	CLF1	99	37.916	ENSPCIG00000025825	CRNKL1	90	37.826	Phascolarctos_cinereus
YLR117C	CLF1	99	36.614	ENSPFOG00000005102	crnkl1	88	36.522	Poecilia_formosa
YLR117C	CLF1	99	36.614	ENSPLAG00000007288	crnkl1	84	36.522	Poecilia_latipinna
YLR117C	CLF1	99	36.758	ENSPMEG00000008865	crnkl1	88	36.667	Poecilia_mexicana
YLR117C	CLF1	99	36.614	ENSPREG00000012615	crnkl1	87	36.614	Poecilia_reticulata
YLR117C	CLF1	99	37.627	ENSPPYG00000010747	CRNKL1	76	37.536	Pongo_abelii
YLR117C	CLF1	99	35.890	ENSPCAG00000003296	CRNKL1	80	35.652	Procavia_capensis
YLR117C	CLF1	99	37.192	ENSPCOG00000017608	CRNKL1	78	37.101	Propithecus_coquereli
YLR117C	CLF1	99	37.771	ENSPVAG00000006207	CRNKL1	79	37.681	Pteropus_vampyrus
YLR117C	CLF1	99	36.561	ENSPNYG00000001977	crnkl1	86	36.469	Pundamilia_nyererei
YLR117C	CLF1	99	37.391	ENSPNAG00000001507	crnkl1	93	35.890	Pygocentrus_nattereri
YLR117C	CLF1	99	37.627	ENSRNOG00000040045	Crnkl1	94	37.536	Rattus_norvegicus
YLR117C	CLF1	99	37.627	ENSRNOG00000010587	Crnkl1	94	37.536	Rattus_norvegicus
YLR117C	CLF1	99	37.627	ENSRBIG00000031770	CRNKL1	94	37.536	Rhinopithecus_bieti
YLR117C	CLF1	99	37.482	ENSRROG00000040450	CRNKL1	94	37.391	Rhinopithecus_roxellana
YLR117C	CLF1	99	37.627	ENSSBOG00000029672	CRNKL1	94	37.536	Saimiri_boliviensis_boliviensis
YLR117C	CLF1	99	34.348	ENSSHAG00000011199	CRNKL1	98	33.768	Sarcophilus_harrisii
YLR117C	CLF1	98	36.284	ENSSFOG00015000946	crnkl1	84	36.430	Scleropages_formosus
YLR117C	CLF1	99	36.812	ENSSMAG00000007933	crnkl1	84	36.720	Scophthalmus_maximus
YLR117C	CLF1	99	34.682	ENSSDUG00000012625	crnkl1	83	34.682	Seriola_dumerili
YLR117C	CLF1	99	37.192	ENSSLDG00000021413	crnkl1	84	37.192	Seriola_lalandi_dorsalis
YLR117C	CLF1	99	37.771	ENSSARG00000006443	CRNKL1	78	37.681	Sorex_araneus
YLR117C	CLF1	99	37.482	ENSSPUG00000005254	CRNKL1	94	37.391	Sphenodon_punctatus
YLR117C	CLF1	99	37.391	ENSSPAG00000016150	crnkl1	84	37.482	Stegastes_partitus
YLR117C	CLF1	99	37.916	ENSSSCG00000038587	CRNKL1	93	37.826	Sus_scrofa
YLR117C	CLF1	99	37.428	ENSTGUG00000007645	CRNKL1	93	37.337	Taeniopygia_guttata
YLR117C	CLF1	99	34.203	ENSTRUG00000015417	crnkl1	86	34.203	Takifugu_rubripes
YLR117C	CLF1	99	36.652	ENSTNIG00000010710	crnkl1	94	36.508	Tetraodon_nigroviridis
YLR117C	CLF1	93	37.054	ENSTBEG00000001304	CRNKL1	78	37.054	Tupaia_belangeri
YLR117C	CLF1	93	36.279	ENSTTRG00000000484	CRNKL1	77	36.279	Tursiops_truncatus
YLR117C	CLF1	99	37.916	ENSUAMG00000018586	CRNKL1	94	37.826	Ursus_americanus
YLR117C	CLF1	99	37.916	ENSUMAG00000024957	CRNKL1	95	37.805	Ursus_maritimus
YLR117C	CLF1	99	37.771	ENSVVUG00000012559	CRNKL1	78	37.826	Vulpes_vulpes
YLR117C	CLF1	99	38.150	ENSXETG00000009698	crnkl1	94	38.061	Xenopus_tropicalis
YLR117C	CLF1	99	36.850	ENSXCOG00000000824	crnkl1	87	36.850	Xiphophorus_couchianus
YLR117C	CLF1	99	37.192	ENSXMAG00000006896	crnkl1	87	37.192	Xiphophorus_maculatus