EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YLR147C (Gene tree)
Gene ID: -
Gene Symbol: SMD3
Alias: SLT16
Full Name: Core Sm protein Sm D3%3B part of heteroheptameric complex (with Smb1p%2C Smd1p%2C Smd2p%2C Sme1p%2C Smx3p%2C and Smx2p) that is part of the spliceosomal U1%2C U2%2C U4%2C and U5 snRNPs%3B homolog of human Sm D3
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 306 bases
Position: chrXII:434158-434463
Accession: S000004137
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR147C_mRNA	LSM	PF01423.22	1.3e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	BioRadArray & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR147C_mRNA	-	306	-	YLR147C_mRNA	101 (aa)	-	P43321

Gene Model

Click here to download YLR147C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YLR147C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR147C	SMD3	92	47.368	ENSG00000100028	SNRPD3	95	47.458	Homo_sapiens
YLR147C	SMD3	92	47.368	ENSAPOG00000007512	snrpd3l	75	47.368	Acanthochromis_polyacanthus
YLR147C	SMD3	92	47.368	ENSAMEG00000013935	SNRPD3	75	47.368	Ailuropoda_melanoleuca
YLR147C	SMD3	92	47.368	ENSACIG00000008871	snrpd3l	75	47.368	Amphilophus_citrinellus
YLR147C	SMD3	92	47.368	ENSAOCG00000008497	SNRPD3	75	47.368	Amphiprion_ocellaris
YLR147C	SMD3	92	47.368	ENSAOCG00000022442	-	75	47.368	Amphiprion_ocellaris
YLR147C	SMD3	92	47.368	ENSAOCG00000016759	-	88	47.368	Amphiprion_ocellaris
YLR147C	SMD3	92	47.368	ENSAOCG00000016743	snrpd3l	75	47.368	Amphiprion_ocellaris
YLR147C	SMD3	92	47.368	ENSAPEG00000006260	-	88	47.368	Amphiprion_percula
YLR147C	SMD3	92	47.368	ENSAPEG00000006273	snrpd3l	75	47.368	Amphiprion_percula
YLR147C	SMD3	92	47.368	ENSATEG00000020556	snrpd3l	68	47.368	Anabas_testudineus
YLR147C	SMD3	92	47.368	ENSAPLG00000008670	SNRPD3	75	47.368	Anas_platyrhynchos
YLR147C	SMD3	92	47.368	ENSANAG00000026106	SNRPD3	80	47.368	Aotus_nancymaae
YLR147C	SMD3	92	47.368	ENSACLG00000021295	snrpd3l	75	47.368	Astatotilapia_calliptera
YLR147C	SMD3	80	50.617	ENSAMXG00000038984	snrpd3l	74	47.368	Astyanax_mexicanus
YLR147C	SMD3	92	47.368	ENSBTAG00000021262	SNRPD3	75	47.368	Bos_taurus
YLR147C	SMD3	84	51.765	WBGene00004914	snr-1	63	51.765	Caenorhabditis_elegans
YLR147C	SMD3	92	47.368	ENSCJAG00000009630	SNRPD3	80	47.368	Callithrix_jacchus
YLR147C	SMD3	92	46.316	ENSCAFG00000017258	-	75	46.316	Canis_familiaris
YLR147C	SMD3	92	47.368	ENSCAFG00000013864	-	75	47.368	Canis_familiaris
YLR147C	SMD3	92	47.368	ENSCAFG00020007165	-	75	47.368	Canis_lupus_dingo
YLR147C	SMD3	56	49.123	ENSCAFG00020024699	-	55	49.123	Canis_lupus_dingo
YLR147C	SMD3	92	47.368	ENSCHIG00000000057	SNRPD3	75	47.368	Capra_hircus
YLR147C	SMD3	92	47.368	ENSTSYG00000007649	SNRPD3	75	47.368	Carlito_syrichta
YLR147C	SMD3	92	47.368	ENSCAPG00000016432	-	75	47.368	Cavia_aperea
YLR147C	SMD3	92	47.368	ENSCPOG00000033102	-	75	47.368	Cavia_porcellus
YLR147C	SMD3	92	47.368	ENSCCAG00000035006	SNRPD3	75	47.368	Cebus_capucinus
YLR147C	SMD3	92	47.368	ENSCATG00000038878	SNRPD3	75	47.368	Cercocebus_atys
YLR147C	SMD3	92	47.368	ENSCLAG00000011403	SNRPD3	75	47.368	Chinchilla_lanigera
YLR147C	SMD3	92	47.368	ENSCSAG00000010694	SNRPD3	75	47.368	Chlorocebus_sabaeus
YLR147C	SMD3	92	47.368	ENSCPBG00000002065	SNRPD3	75	47.368	Chrysemys_picta_bellii
YLR147C	SMD3	80	50.617	ENSCSAVG00000004708	-	63	50.617	Ciona_savignyi
YLR147C	SMD3	92	47.368	ENSCANG00000032106	SNRPD3	75	47.368	Colobus_angolensis_palliatus
YLR147C	SMD3	92	47.368	ENSCGRG00001021990	Snrpd3	75	47.368	Cricetulus_griseus_chok1gshd
YLR147C	SMD3	92	47.368	ENSCGRG00000004280	Snrpd3	75	47.368	Cricetulus_griseus_crigri
YLR147C	SMD3	92	48.421	ENSCVAG00000001276	snrpd3l	75	48.421	Cyprinodon_variegatus
YLR147C	SMD3	80	50.617	ENSDARG00000076283	snrpd3l	74	47.368	Danio_rerio
YLR147C	SMD3	80	50.617	ENSDARG00000013800	snrpd3	64	50.617	Danio_rerio
YLR147C	SMD3	92	47.368	ENSDNOG00000047424	-	75	47.368	Dasypus_novemcinctus
YLR147C	SMD3	80	48.193	ENSDNOG00000018004	-	65	48.193	Dasypus_novemcinctus
YLR147C	SMD3	79	38.750	ENSDNOG00000042638	-	66	38.750	Dasypus_novemcinctus
YLR147C	SMD3	80	46.914	ENSDORG00000027706	-	64	46.914	Dipodomys_ordii
YLR147C	SMD3	75	38.158	ENSDORG00000027169	-	62	38.158	Dipodomys_ordii
YLR147C	SMD3	79	42.683	ENSDORG00000002800	-	75	42.683	Dipodomys_ordii
YLR147C	SMD3	92	44.086	FBgn0023167	SmD3	58	45.455	Drosophila_melanogaster
YLR147C	SMD3	92	47.368	ENSEASG00005000273	SNRPD3	75	47.368	Equus_asinus_asinus
YLR147C	SMD3	92	47.368	ENSECAG00000023316	SNRPD3	75	47.368	Equus_caballus
YLR147C	SMD3	92	47.368	ENSEEUG00000015518	SNRPD3	76	47.368	Erinaceus_europaeus
YLR147C	SMD3	92	47.368	ENSELUG00000010092	snrpd3l	75	47.368	Esox_lucius
YLR147C	SMD3	80	50.617	ENSELUG00000001854	snrpd3	75	47.368	Esox_lucius
YLR147C	SMD3	92	47.368	ENSFCAG00000001512	SNRPD3	79	47.368	Felis_catus
YLR147C	SMD3	92	47.368	ENSFALG00000007303	SNRPD3	75	47.368	Ficedula_albicollis
YLR147C	SMD3	92	47.368	ENSFDAG00000010772	SNRPD3	75	47.368	Fukomys_damarensis
YLR147C	SMD3	92	47.368	ENSFHEG00000010754	snrpd3l	75	47.368	Fundulus_heteroclitus
YLR147C	SMD3	92	46.875	ENSGMOG00000008469	snrpd3l	75	46.875	Gadus_morhua
YLR147C	SMD3	92	47.368	ENSGALG00000006596	SNRPD3	75	47.368	Gallus_gallus
YLR147C	SMD3	92	47.368	ENSGAFG00000006661	snrpd3l	73	47.368	Gambusia_affinis
YLR147C	SMD3	92	46.875	ENSGACG00000017533	snrpd3l	75	46.875	Gasterosteus_aculeatus
YLR147C	SMD3	92	47.368	ENSGAGG00000023325	SNRPD3	75	47.368	Gopherus_agassizii
YLR147C	SMD3	92	47.368	ENSGGOG00000015640	SNRPD3	75	47.368	Gorilla_gorilla
YLR147C	SMD3	92	47.368	ENSHBUG00000001332	snrpd3l	75	47.368	Haplochromis_burtoni
YLR147C	SMD3	92	47.368	ENSHGLG00000016496	SNRPD3	75	47.368	Heterocephalus_glaber_female
YLR147C	SMD3	92	45.263	ENSHGLG00000009844	-	75	45.263	Heterocephalus_glaber_female
YLR147C	SMD3	92	45.263	ENSHGLG00100011326	-	75	45.263	Heterocephalus_glaber_male
YLR147C	SMD3	92	47.368	ENSHGLG00100019304	SNRPD3	75	47.368	Heterocephalus_glaber_male
YLR147C	SMD3	92	47.368	ENSHCOG00000014396	snrpd3l	75	47.368	Hippocampus_comes
YLR147C	SMD3	80	50.617	ENSIPUG00000003083	snrpd3	74	47.368	Ictalurus_punctatus
YLR147C	SMD3	92	47.368	ENSSTOG00000025674	SNRPD3	75	47.368	Ictidomys_tridecemlineatus
YLR147C	SMD3	92	47.368	ENSJJAG00000013303	Snrpd3	75	47.368	Jaculus_jaculus
YLR147C	SMD3	92	47.368	ENSKMAG00000012493	snrpd3l	75	47.368	Kryptolebias_marmoratus
YLR147C	SMD3	92	47.368	ENSLBEG00000003202	snrpd3l	75	47.368	Labrus_bergylta
YLR147C	SMD3	92	46.316	ENSLACG00000015192	SNRPD3	75	46.316	Latimeria_chalumnae
YLR147C	SMD3	92	47.368	ENSLOCG00000006978	snrpd3	80	47.368	Lepisosteus_oculatus
YLR147C	SMD3	92	47.368	ENSLAFG00000028180	SNRPD3	75	47.368	Loxodonta_africana
YLR147C	SMD3	92	47.368	ENSMFAG00000033628	SNRPD3	75	47.368	Macaca_fascicularis
YLR147C	SMD3	92	47.368	ENSMMUG00000000264	SNRPD3	75	47.368	Macaca_mulatta
YLR147C	SMD3	92	47.368	ENSMNEG00000020857	SNRPD3	75	47.368	Macaca_nemestrina
YLR147C	SMD3	92	47.368	ENSMLEG00000037548	SNRPD3	79	47.368	Mandrillus_leucophaeus
YLR147C	SMD3	92	47.368	ENSMZEG00005017664	snrpd3l	75	47.368	Maylandia_zebra
YLR147C	SMD3	92	47.368	ENSMAUG00000021393	Snrpd3	75	47.368	Mesocricetus_auratus
YLR147C	SMD3	92	47.368	ENSMICG00000034782	SNRPD3	75	47.368	Microcebus_murinus
YLR147C	SMD3	92	47.368	ENSMOCG00000009361	Snrpd3	75	47.368	Microtus_ochrogaster
YLR147C	SMD3	92	47.368	ENSMMOG00000020985	snrpd3l	60	47.368	Mola_mola
YLR147C	SMD3	92	47.368	ENSMODG00000004024	SNRPD3	75	47.368	Monodelphis_domestica
YLR147C	SMD3	92	47.368	ENSMALG00000013334	snrpd3l	75	47.368	Monopterus_albus
YLR147C	SMD3	92	47.368	MGP_CAROLIEiJ_G0015441	Snrpd3	75	47.368	Mus_caroli
YLR147C	SMD3	92	47.368	ENSMUSG00000020180	Snrpd3	82	43.478	Mus_musculus
YLR147C	SMD3	92	47.368	MGP_PahariEiJ_G0030857	Snrpd3	75	47.368	Mus_pahari
YLR147C	SMD3	92	47.368	MGP_SPRETEiJ_G0016254	Snrpd3	75	47.368	Mus_spretus
YLR147C	SMD3	92	47.368	ENSMPUG00000002889	SNRPD3	75	47.368	Mustela_putorius_furo
YLR147C	SMD3	92	47.368	ENSMLUG00000009838	SNRPD3	75	47.368	Myotis_lucifugus
YLR147C	SMD3	92	47.368	ENSNGAG00000010328	Snrpd3	75	47.368	Nannospalax_galili
YLR147C	SMD3	92	47.368	ENSNBRG00000020307	snrpd3l	75	47.368	Neolamprologus_brichardi
YLR147C	SMD3	92	47.368	ENSNLEG00000035757	SNRPD3	75	47.368	Nomascus_leucogenys
YLR147C	SMD3	92	47.368	ENSMEUG00000003772	SNRPD3	75	47.368	Notamacropus_eugenii
YLR147C	SMD3	92	47.368	ENSOPRG00000005763	SNRPD3	75	47.368	Ochotona_princeps
YLR147C	SMD3	80	49.383	ENSODEG00000020162	-	65	49.383	Octodon_degus
YLR147C	SMD3	92	46.316	ENSODEG00000019354	-	75	46.316	Octodon_degus
YLR147C	SMD3	92	47.368	ENSODEG00000008064	-	75	47.368	Octodon_degus
YLR147C	SMD3	92	47.368	ENSONIG00000003828	snrpd3l	75	47.368	Oreochromis_niloticus
YLR147C	SMD3	92	47.368	ENSOANG00000002463	SNRPD3	75	47.368	Ornithorhynchus_anatinus
YLR147C	SMD3	92	47.368	ENSOCUG00000004845	SNRPD3	75	47.368	Oryctolagus_cuniculus
YLR147C	SMD3	92	47.368	ENSORLG00000010586	snrpd3l	75	47.368	Oryzias_latipes
YLR147C	SMD3	92	47.368	ENSORLG00020011769	snrpd3l	75	47.368	Oryzias_latipes_hni
YLR147C	SMD3	92	47.368	ENSORLG00015022940	snrpd3l	75	47.368	Oryzias_latipes_hsok
YLR147C	SMD3	92	47.368	ENSOMEG00000022734	snrpd3l	75	47.368	Oryzias_melastigma
YLR147C	SMD3	92	47.368	ENSOGAG00000012708	SNRPD3	75	47.368	Otolemur_garnettii
YLR147C	SMD3	92	47.368	ENSOARG00000013984	SNRPD3	75	47.368	Ovis_aries
YLR147C	SMD3	92	47.368	ENSPPAG00000039191	SNRPD3	75	47.368	Pan_paniscus
YLR147C	SMD3	92	47.368	ENSPPRG00000001470	SNRPD3	75	47.368	Panthera_pardus
YLR147C	SMD3	92	47.368	ENSPTIG00000016610	SNRPD3	75	47.368	Panthera_tigris_altaica
YLR147C	SMD3	92	47.368	ENSPTRG00000014176	SNRPD3	75	47.368	Pan_troglodytes
YLR147C	SMD3	92	47.368	ENSPANG00000009279	SNRPD3	79	47.368	Papio_anubis
YLR147C	SMD3	92	47.368	ENSPKIG00000006412	snrpd3l	75	47.368	Paramormyrops_kingsleyae
YLR147C	SMD3	92	48.421	ENSPSIG00000010022	-	75	48.421	Pelodiscus_sinensis
YLR147C	SMD3	92	47.368	ENSPMGG00000004486	snrpd3l	77	47.368	Periophthalmus_magnuspinnatus
YLR147C	SMD3	92	47.368	ENSPCIG00000010910	SNRPD3	63	47.368	Phascolarctos_cinereus
YLR147C	SMD3	92	47.368	ENSPFOG00000019673	snrpd3l	75	47.368	Poecilia_formosa
YLR147C	SMD3	92	47.368	ENSPLAG00000023249	snrpd3l	75	47.368	Poecilia_latipinna
YLR147C	SMD3	92	47.368	ENSPMEG00000008482	snrpd3l	75	47.368	Poecilia_mexicana
YLR147C	SMD3	92	47.368	ENSPREG00000007532	snrpd3l	78	47.368	Poecilia_reticulata
YLR147C	SMD3	92	47.368	ENSPPYG00000011648	SNRPD3	75	47.368	Pongo_abelii
YLR147C	SMD3	92	47.368	ENSPCAG00000002065	SNRPD3	75	47.368	Procavia_capensis
YLR147C	SMD3	92	47.368	ENSPCOG00000011842	SNRPD3	75	47.368	Propithecus_coquereli
YLR147C	SMD3	92	47.368	ENSPVAG00000011405	SNRPD3	75	47.368	Pteropus_vampyrus
YLR147C	SMD3	92	47.368	ENSPNYG00000013344	snrpd3l	75	47.368	Pundamilia_nyererei
YLR147C	SMD3	80	51.852	ENSPNAG00000008683	snrpd3l	74	48.421	Pygocentrus_nattereri
YLR147C	SMD3	80	51.852	ENSPNAG00000010547	snrpd3	75	48.421	Pygocentrus_nattereri
YLR147C	SMD3	92	47.368	ENSRNOG00000050410	Snrpd3	75	47.368	Rattus_norvegicus
YLR147C	SMD3	92	47.368	ENSRBIG00000029017	SNRPD3	75	47.368	Rhinopithecus_bieti
YLR147C	SMD3	92	47.368	ENSRROG00000031152	SNRPD3	75	47.368	Rhinopithecus_roxellana
YLR147C	SMD3	92	46.316	ENSSFOG00015014180	snrpd3l	75	46.316	Scleropages_formosus
YLR147C	SMD3	80	50.617	ENSSFOG00015007002	snrpd3l	75	47.368	Scleropages_formosus
YLR147C	SMD3	92	47.368	ENSSMAG00000019307	snrpd3l	75	47.368	Scophthalmus_maximus
YLR147C	SMD3	92	47.368	ENSSDUG00000006870	snrpd3l	75	47.368	Seriola_dumerili
YLR147C	SMD3	92	47.368	ENSSLDG00000022664	snrpd3l	75	47.368	Seriola_lalandi_dorsalis
YLR147C	SMD3	92	47.368	ENSSARG00000002357	SNRPD3	75	47.368	Sorex_araneus
YLR147C	SMD3	92	47.368	ENSSPUG00000014285	SNRPD3	75	47.368	Sphenodon_punctatus
YLR147C	SMD3	92	47.368	ENSSSCG00000010058	SNRPD3	75	47.368	Sus_scrofa
YLR147C	SMD3	92	47.368	ENSTGUG00000010079	SNRPD3	75	47.368	Taeniopygia_guttata
YLR147C	SMD3	92	47.368	ENSTRUG00000023976	snrpd3l	81	47.368	Takifugu_rubripes
YLR147C	SMD3	92	47.368	ENSTNIG00000005323	snrpd3l	75	47.368	Tetraodon_nigroviridis
YLR147C	SMD3	92	47.368	ENSTBEG00000014334	SNRPD3	75	47.368	Tupaia_belangeri
YLR147C	SMD3	92	47.368	ENSTTRG00000006022	SNRPD3	75	47.368	Tursiops_truncatus
YLR147C	SMD3	92	47.368	ENSUAMG00000010767	SNRPD3	75	47.368	Ursus_americanus
YLR147C	SMD3	92	47.368	ENSUMAG00000001670	SNRPD3	75	47.368	Ursus_maritimus
YLR147C	SMD3	92	47.368	ENSVPAG00000000241	SNRPD3	75	47.368	Vicugna_pacos
YLR147C	SMD3	79	50.000	ENSXETG00000024918	snrpd3	63	50.000	Xenopus_tropicalis
YLR147C	SMD3	92	47.368	ENSXCOG00000004795	snrpd3l	75	47.368	Xiphophorus_couchianus
YLR147C	SMD3	92	47.368	ENSXMAG00000001133	snrpd3l	75	47.368	Xiphophorus_maculatus