EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YLR175W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1452
Position: chrXII:506134-507585
Accession: S000004165
RBP type: canonical RBP
Summary: Pseudouridine synthase catalytic subunit of box H/ACA snoRNPs%3B acts on large and small rRNAs%2C on snRNA U2%2C and on some mRNAs%3B mutations in human ortholog dyskerin cause the disorder dyskeratosis congenita%3B small nucleolar ribonucleoprotein particles are also known as snoRNPs

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR175W_mRNA	TruB_N	PF01509.18	4.1e-20	1	1
YLR175W_mRNA	PUA	PF01472.20	1.2e-19	1	1
YLR175W_mRNA	DKCLD	PF08068.12	7.6e-33	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR175W_mRNA	-	1452	-	YLR175W_mRNA	483 (aa)	-	P33322

Gene Model

Click here to download YLR175W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YLR175W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR175W	-	88	66.509	ENSG00000130826	DKC1	98	67.980	Homo_sapiens
YLR175W	-	86	68.523	ENSAPOG00000007799	dkc1	77	70.483	Acanthochromis_polyacanthus
YLR175W	-	94	63.377	ENSACIG00000022614	dkc1	82	70.229	Amphilophus_citrinellus
YLR175W	-	86	68.281	ENSAOCG00000013159	dkc1	78	71.615	Amphiprion_ocellaris
YLR175W	-	86	68.281	ENSAPEG00000002284	dkc1	80	70.229	Amphiprion_percula
YLR175W	-	79	70.256	ENSATEG00000013682	dkc1	76	70.256	Anabas_testudineus
YLR175W	-	88	66.509	ENSACAG00000015600	DKC1	66	71.354	Anolis_carolinensis
YLR175W	-	88	66.509	ENSANAG00000022732	DKC1	75	71.875	Aotus_nancymaae
YLR175W	-	79	71.540	ENSACLG00000015605	dkc1	78	71.540	Astatotilapia_calliptera
YLR175W	-	98	61.635	ENSAMXG00000017108	dkc1	76	71.802	Astyanax_mexicanus
YLR175W	-	94	64.097	ENSBTAG00000013045	DKC1	77	70.951	Bos_taurus
YLR175W	-	80	66.494	WBGene00010478	K01G5.5	87	66.494	Caenorhabditis_elegans
YLR175W	-	98	61.864	ENSCJAG00000004210	DKC1	80	70.079	Callithrix_jacchus
YLR175W	-	85	67.386	ENSCAFG00000019620	-	74	71.354	Canis_familiaris
YLR175W	-	85	60.097	ENSCAFG00000009311	-	75	62.760	Canis_familiaris
YLR175W	-	85	58.881	ENSCAFG00020009379	-	72	61.719	Canis_lupus_dingo
YLR175W	-	85	67.386	ENSCAFG00020008918	-	74	71.354	Canis_lupus_dingo
YLR175W	-	94	64.097	ENSCHIG00000017392	DKC1	77	70.951	Capra_hircus
YLR175W	-	91	65.079	ENSTSYG00000007681	DKC1	76	69.018	Carlito_syrichta
YLR175W	-	84	66.089	ENSCAPG00000003342	DKC1	85	69.437	Cavia_aperea
YLR175W	-	88	66.509	ENSCPOG00000008825	DKC1	77	70.229	Cavia_porcellus
YLR175W	-	88	58.019	ENSCCAG00000027418	DKC1	72	62.240	Cebus_capucinus
YLR175W	-	88	66.981	ENSCATG00000033602	DKC1	75	72.135	Cercocebus_atys
YLR175W	-	86	67.064	ENSCLAG00000000720	DKC1	78	69.521	Chinchilla_lanigera
YLR175W	-	88	66.981	ENSCSAG00000006706	DKC1	75	72.135	Chlorocebus_sabaeus
YLR175W	-	80	71.354	ENSCPBG00000005858	DKC1	82	71.354	Chrysemys_picta_bellii
YLR175W	-	78	67.546	ENSCING00000004599	-	73	67.546	Ciona_intestinalis
YLR175W	-	78	68.074	ENSCSAVG00000010047	-	85	68.074	Ciona_savignyi
YLR175W	-	88	66.981	ENSCANG00000027987	DKC1	75	72.135	Colobus_angolensis_palliatus
YLR175W	-	77	54.960	ENSCGRG00001016789	-	79	54.960	Cricetulus_griseus_chok1gshd
YLR175W	-	80	71.875	ENSCGRG00001014574	-	75	71.875	Cricetulus_griseus_chok1gshd
YLR175W	-	80	71.875	ENSCGRG00000016075	-	75	71.875	Cricetulus_griseus_crigri
YLR175W	-	75	55.525	ENSCGRG00000014809	-	78	54.960	Cricetulus_griseus_crigri
YLR175W	-	88	65.340	ENSCSEG00000012633	dkc1	81	70.757	Cynoglossus_semilaevis
YLR175W	-	79	72.063	ENSCVAG00000010155	dkc1	75	72.063	Cyprinodon_variegatus
YLR175W	-	79	72.063	ENSDARG00000016484	dkc1	76	72.063	Danio_rerio
YLR175W	-	88	66.588	ENSDNOG00000004218	DKC1	75	71.875	Dasypus_novemcinctus
YLR175W	-	55	63.670	ENSDORG00000013566	-	87	63.670	Dipodomys_ordii
YLR175W	-	85	66.748	FBgn0259937	Nop60B	84	68.421	Drosophila_melanogaster
YLR175W	-	92	63.146	ENSETEG00000016095	DKC1	78	71.354	Echinops_telfairi
YLR175W	-	65	70.513	ENSEBUG00000015962	dkc1	99	70.990	Eptatretus_burgeri
YLR175W	-	98	60.788	ENSECAG00000023524	DKC1	71	70.153	Equus_caballus
YLR175W	-	85	66.262	ENSEEUG00000003323	DKC1	94	67.168	Erinaceus_europaeus
YLR175W	-	85	69.175	ENSELUG00000014538	dkc1	80	70.455	Esox_lucius
YLR175W	-	93	64.062	ENSFCAG00000006577	DKC1	76	71.615	Felis_catus
YLR175W	-	88	67.517	ENSFALG00000011496	DKC1	77	70.149	Ficedula_albicollis
YLR175W	-	88	66.509	ENSFDAG00000002516	DKC1	77	71.615	Fukomys_damarensis
YLR175W	-	93	63.556	ENSFHEG00000004627	dkc1	76	70.496	Fundulus_heteroclitus
YLR175W	-	79	68.668	ENSGMOG00000017277	dkc1	98	68.668	Gadus_morhua
YLR175W	-	88	67.916	ENSGALG00000005054	DKC1	74	72.917	Gallus_gallus
YLR175W	-	85	66.905	ENSGAFG00000011486	dkc1	68	69.873	Gambusia_affinis
YLR175W	-	79	69.974	ENSGACG00000004373	dkc1	96	71.733	Gasterosteus_aculeatus
YLR175W	-	80	72.135	ENSGAGG00000011330	DKC1	74	72.135	Gopherus_agassizii
YLR175W	-	88	66.509	ENSGGOG00000001045	DKC1	75	71.615	Gorilla_gorilla
YLR175W	-	87	68.019	ENSHBUG00000012436	dkc1	77	71.802	Haplochromis_burtoni
YLR175W	-	83	70.000	ENSHGLG00000000649	DKC1	76	70.992	Heterocephalus_glaber_female
YLR175W	-	83	70.000	ENSHGLG00100001153	DKC1	77	70.992	Heterocephalus_glaber_male
YLR175W	-	79	70.757	ENSHCOG00000021099	dkc1	76	70.757	Hippocampus_comes
YLR175W	-	79	72.063	ENSIPUG00000010309	dkc1	74	72.063	Ictalurus_punctatus
YLR175W	-	81	70.738	ENSSTOG00000001074	-	81	70.738	Ictidomys_tridecemlineatus
YLR175W	-	98	57.627	ENSSTOG00000020149	-	75	65.365	Ictidomys_tridecemlineatus
YLR175W	-	85	57.757	ENSSTOG00000011904	-	70	61.458	Ictidomys_tridecemlineatus
YLR175W	-	55	63.296	ENSJJAG00000010086	-	88	63.296	Jaculus_jaculus
YLR175W	-	85	67.718	ENSKMAG00000008010	dkc1	77	71.279	Kryptolebias_marmoratus
YLR175W	-	87	66.110	ENSLBEG00000019122	dkc1	81	68.274	Labrus_bergylta
YLR175W	-	87	65.796	ENSLACG00000014025	DKC1	87	70.235	Latimeria_chalumnae
YLR175W	-	85	68.689	ENSLOCG00000013713	dkc1	80	72.063	Lepisosteus_oculatus
YLR175W	-	97	62.687	ENSLAFG00000000221	DKC1	75	71.354	Loxodonta_africana
YLR175W	-	88	66.745	ENSMFAG00000032398	DKC1	64	72.135	Macaca_fascicularis
YLR175W	-	88	66.981	ENSMMUG00000005768	DKC1	75	72.135	Macaca_mulatta
YLR175W	-	88	66.981	ENSMNEG00000034503	DKC1	75	72.135	Macaca_nemestrina
YLR175W	-	88	66.981	ENSMLEG00000034422	DKC1	75	72.135	Mandrillus_leucophaeus
YLR175W	-	79	71.802	ENSMAMG00000005427	dkc1	86	71.802	Mastacembelus_armatus
YLR175W	-	87	67.780	ENSMZEG00005014503	dkc1	77	71.540	Maylandia_zebra
YLR175W	-	80	69.152	ENSMGAG00000009238	DKC1	78	73.056	Meleagris_gallopavo
YLR175W	-	55	63.296	ENSMAUG00000016454	-	87	63.296	Mesocricetus_auratus
YLR175W	-	83	59.204	ENSMICG00000002818	-	98	62.155	Microcebus_murinus
YLR175W	-	98	61.783	ENSMICG00000038751	-	77	70.833	Microcebus_murinus
YLR175W	-	55	61.049	ENSMOCG00000001169	-	87	61.049	Microtus_ochrogaster
YLR175W	-	79	71.279	ENSMMOG00000020348	dkc1	83	71.279	Mola_mola
YLR175W	-	79	69.713	ENSMODG00000009243	DKC1	67	69.713	Monodelphis_domestica
YLR175W	-	97	62.526	ENSMALG00000009454	dkc1	76	71.018	Monopterus_albus
YLR175W	-	98	54.678	MGP_CAROLIEiJ_G0033191	Dkc1	79	78.448	Mus_caroli
YLR175W	-	93	64.889	ENSMUSG00000031403	Dkc1	87	62.921	Mus_musculus
YLR175W	-	85	68.613	MGP_PahariEiJ_G0031735	Dkc1	87	63.296	Mus_pahari
YLR175W	-	85	68.370	MGP_SPRETEiJ_G0034351	Dkc1	87	62.921	Mus_spretus
YLR175W	-	85	67.626	ENSMPUG00000016136	DKC1	71	71.354	Mustela_putorius_furo
YLR175W	-	84	64.938	ENSMLUG00000011918	DKC1	74	67.010	Myotis_lucifugus
YLR175W	-	55	62.921	ENSNGAG00000015724	-	88	62.921	Nannospalax_galili
YLR175W	-	79	71.802	ENSNBRG00000005638	dkc1	77	71.802	Neolamprologus_brichardi
YLR175W	-	88	66.274	ENSNLEG00000014323	DKC1	75	71.615	Nomascus_leucogenys
YLR175W	-	79	66.580	ENSMEUG00000001066	DKC1	84	66.580	Notamacropus_eugenii
YLR175W	-	70	67.751	ENSOPRG00000005248	DKC1	67	67.751	Ochotona_princeps
YLR175W	-	81	71.100	ENSODEG00000011816	-	76	71.100	Octodon_degus
YLR175W	-	55	62.921	ENSODEG00000000549	-	87	62.921	Octodon_degus
YLR175W	-	87	67.780	ENSONIG00000013889	dkc1	76	71.540	Oreochromis_niloticus
YLR175W	-	98	62.055	ENSOCUG00000012646	DKC1	75	71.615	Oryctolagus_cuniculus
YLR175W	-	98	60.593	ENSORLG00000018748	dkc1	85	64.138	Oryzias_latipes
YLR175W	-	79	70.757	ENSOMEG00000005786	dkc1	78	76.316	Oryzias_melastigma
YLR175W	-	91	65.533	ENSOGAG00000003399	DKC1	73	71.875	Otolemur_garnettii
YLR175W	-	89	65.893	ENSOARG00000003047	DKC1	77	71.208	Ovis_aries
YLR175W	-	80	71.615	ENSPPAG00000023820	DKC1	75	71.615	Pan_paniscus
YLR175W	-	93	64.062	ENSPPRG00000009104	DKC1	86	64.545	Panthera_pardus
YLR175W	-	80	71.615	ENSPTIG00000017469	DKC1	78	71.615	Panthera_tigris_altaica
YLR175W	-	88	66.509	ENSPTRG00000043416	-	65	71.615	Pan_troglodytes
YLR175W	-	88	66.509	ENSPTRG00000022449	DKC1	75	71.615	Pan_troglodytes
YLR175W	-	88	66.981	ENSPANG00000011978	DKC1	75	72.135	Papio_anubis
YLR175W	-	90	65.287	ENSPKIG00000008443	dkc1	81	72.063	Paramormyrops_kingsleyae
YLR175W	-	73	73.504	ENSPSIG00000013765	DKC1	84	73.504	Pelodiscus_sinensis
YLR175W	-	79	68.848	ENSPMGG00000004097	dkc1	70	68.848	Periophthalmus_magnuspinnatus
YLR175W	-	70	78.824	ENSPEMG00000013348	Dkc1	71	78.824	Peromyscus_maniculatus_bairdii
YLR175W	-	84	67.157	ENSPCIG00000016706	DKC1	64	69.974	Phascolarctos_cinereus
YLR175W	-	85	67.143	ENSPFOG00000018653	dkc1	79	70.127	Poecilia_formosa
YLR175W	-	85	67.143	ENSPLAG00000003272	dkc1	71	70.127	Poecilia_latipinna
YLR175W	-	91	64.399	ENSPMEG00000010413	dkc1	79	70.127	Poecilia_mexicana
YLR175W	-	89	65.509	ENSPREG00000004100	dkc1	84	65.046	Poecilia_reticulata
YLR175W	-	88	66.509	ENSPPYG00000020892	DKC1	75	71.615	Pongo_abelii
YLR175W	-	75	71.389	ENSPCAG00000015034	DKC1	70	71.389	Procavia_capensis
YLR175W	-	85	67.386	ENSPCOG00000026874	DKC1	75	71.615	Propithecus_coquereli
YLR175W	-	85	68.127	ENSPVAG00000009222	DKC1	78	70.153	Pteropus_vampyrus
YLR175W	-	87	66.825	ENSPNYG00000020063	dkc1	76	71.540	Pundamilia_nyererei
YLR175W	-	89	67.056	ENSPNAG00000005780	dkc1	76	72.063	Pygocentrus_nattereri
YLR175W	-	97	61.783	ENSRNOG00000055562	Dkc1	78	68.090	Rattus_norvegicus
YLR175W	-	88	66.981	ENSRBIG00000028457	DKC1	64	72.135	Rhinopithecus_bieti
YLR175W	-	88	66.981	ENSRROG00000044780	DKC1	75	72.135	Rhinopithecus_roxellana
YLR175W	-	88	66.197	ENSSBOG00000033746	DKC1	75	71.615	Saimiri_boliviensis_boliviensis
YLR175W	-	93	63.252	ENSSHAG00000002463	DKC1	81	69.974	Sarcophilus_harrisii
YLR175W	-	82	69.652	ENSSFOG00015009585	dkc1	78	69.750	Scleropages_formosus
YLR175W	-	90	64.665	ENSSMAG00000002552	dkc1	77	70.496	Scophthalmus_maximus
YLR175W	-	85	68.523	ENSSDUG00000009963	dkc1	76	71.802	Seriola_dumerili
YLR175W	-	79	71.802	ENSSLDG00000019342	dkc1	81	70.844	Seriola_lalandi_dorsalis
YLR175W	-	80	67.448	ENSSARG00000001822	DKC1	77	67.448	Sorex_araneus
YLR175W	-	80	71.875	ENSSPUG00000018907	DKC1	73	71.875	Sphenodon_punctatus
YLR175W	-	91	64.253	ENSSPAG00000002585	dkc1	81	63.719	Stegastes_partitus
YLR175W	-	98	62.633	ENSSSCG00000012823	DKC1	83	68.766	Sus_scrofa
YLR175W	-	83	68.329	ENSTGUG00000006781	DKC1	83	71.850	Taeniopygia_guttata
YLR175W	-	83	69.212	ENSTRUG00000004413	dkc1	80	69.925	Takifugu_rubripes
YLR175W	-	97	50.725	ENSTNIG00000002582	dkc1	78	55.556	Tetraodon_nigroviridis
YLR175W	-	68	59.878	ENSTBEG00000011262	DKC1	74	68.165	Tupaia_belangeri
YLR175W	-	56	75.368	ENSTTRG00000008089	DKC1	54	75.368	Tursiops_truncatus
YLR175W	-	89	65.814	ENSUAMG00000022721	DKC1	83	70.202	Ursus_americanus
YLR175W	-	89	65.116	ENSUMAG00000016899	DKC1	91	71.582	Ursus_maritimus
YLR175W	-	80	57.292	ENSVVUG00000021671	-	86	49.892	Vulpes_vulpes
YLR175W	-	85	66.038	ENSVVUG00000020734	-	67	70.077	Vulpes_vulpes
YLR175W	-	91	66.742	ENSXETG00000032517	DKC1	76	73.890	Xenopus_tropicalis
YLR175W	-	85	66.587	ENSXCOG00000005498	dkc1	82	70.757	Xiphophorus_couchianus
YLR175W	-	85	66.268	ENSXMAG00000004919	dkc1	77	70.757	Xiphophorus_maculatus