EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YLR222C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Nucleolar protein%3B component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 2454 bases
Position: chrXII:579318-581771
Accession: S000004212
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR222C_mRNA	Utp13	PF08625.11	3.2e-50	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR222C_mRNA	-	2454	-	YLR222C_mRNA	817 (aa)	-	Q05946

Gene Model

Click here to download YLR222C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YLR222C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR222C	-	99	30.182	ENSG00000183751	TBL3	96	30.182	Homo_sapiens
YLR222C	-	93	32.157	ENSAPLG00000008515	TBL3	98	32.166	Anas_platyrhynchos
YLR222C	-	98	30.307	ENSANAG00000030472	TBL3	95	30.307	Aotus_nancymaae
YLR222C	-	99	30.788	ENSAMXG00000042589	tbl3	86	30.668	Astyanax_mexicanus
YLR222C	-	98	30.562	ENSBTAG00000020366	TBL3	94	30.760	Bos_taurus
YLR222C	-	98	30.233	ENSCAFG00000019430	TBL3	95	30.233	Canis_familiaris
YLR222C	-	98	30.307	ENSCAFG00020026321	TBL3	95	30.307	Canis_lupus_dingo
YLR222C	-	98	30.920	ENSCHIG00000007747	TBL3	94	30.920	Capra_hircus
YLR222C	-	98	30.996	ENSCPOG00000005998	TBL3	95	30.996	Cavia_porcellus
YLR222C	-	98	30.061	ENSCCAG00000034486	TBL3	94	30.061	Cebus_capucinus
YLR222C	-	98	30.061	ENSCATG00000031298	TBL3	94	30.061	Cercocebus_atys
YLR222C	-	98	30.307	ENSCLAG00000013342	TBL3	95	30.307	Chinchilla_lanigera
YLR222C	-	98	30.184	ENSCSAG00000011191	TBL3	94	30.184	Chlorocebus_sabaeus
YLR222C	-	98	31.159	ENSCPBG00000000253	TBL3	96	31.159	Chrysemys_picta_bellii
YLR222C	-	98	30.184	ENSCANG00000031169	TBL3	94	30.184	Colobus_angolensis_palliatus
YLR222C	-	98	30.307	ENSCGRG00001021817	Tbl3	95	30.307	Cricetulus_griseus_chok1gshd
YLR222C	-	98	30.307	ENSCGRG00000013364	Tbl3	95	30.307	Cricetulus_griseus_crigri
YLR222C	-	99	31.265	ENSCSEG00000015634	tbl3	98	30.623	Cynoglossus_semilaevis
YLR222C	-	98	30.307	ENSDORG00000007377	Tbl3	95	30.307	Dipodomys_ordii
YLR222C	-	80	33.492	ENSETEG00000019403	TBL3	78	33.492	Echinops_telfairi
YLR222C	-	99	31.333	ENSEBUG00000003526	tbl3	90	31.092	Eptatretus_burgeri
YLR222C	-	98	30.920	ENSEASG00005004649	TBL3	95	30.798	Equus_asinus_asinus
YLR222C	-	98	30.750	ENSECAG00000019299	TBL3	95	30.798	Equus_caballus
YLR222C	-	82	32.909	ENSEEUG00000000761	-	57	32.909	Erinaceus_europaeus
YLR222C	-	98	33.333	ENSELUG00000007394	tbl3	96	33.333	Esox_lucius
YLR222C	-	98	30.920	ENSFCAG00000011740	TBL3	95	30.920	Felis_catus
YLR222C	-	99	30.529	ENSFALG00000003409	TBL3	96	30.593	Ficedula_albicollis
YLR222C	-	98	31.043	ENSFDAG00000007751	TBL3	95	31.043	Fukomys_damarensis
YLR222C	-	98	32.073	ENSGALG00000005558	TBL3	95	32.147	Gallus_gallus
YLR222C	-	98	31.681	ENSGAGG00000024028	TBL3	96	31.681	Gopherus_agassizii
YLR222C	-	99	30.182	ENSGGOG00000009378	TBL3	96	30.182	Gorilla_gorilla
YLR222C	-	98	31.166	ENSHGLG00000002431	TBL3	95	31.166	Heterocephalus_glaber_female
YLR222C	-	98	30.675	ENSHGLG00100012878	TBL3	95	30.675	Heterocephalus_glaber_male
YLR222C	-	99	31.001	ENSIPUG00000003568	TBL3	86	31.010	Ictalurus_punctatus
YLR222C	-	98	30.184	ENSSTOG00000012964	TBL3	95	30.184	Ictidomys_tridecemlineatus
YLR222C	-	98	31.166	ENSJJAG00000004124	Tbl3	96	31.166	Jaculus_jaculus
YLR222C	-	99	31.704	ENSLOCG00000008853	tbl3	85	31.466	Lepisosteus_oculatus
YLR222C	-	98	30.307	ENSLAFG00000004699	TBL3	95	30.307	Loxodonta_africana
YLR222C	-	98	30.307	ENSMFAG00000030302	TBL3	94	30.375	Macaca_fascicularis
YLR222C	-	98	30.307	ENSMMUG00000007943	TBL3	96	30.307	Macaca_mulatta
YLR222C	-	98	30.184	ENSMNEG00000032603	TBL3	94	30.250	Macaca_nemestrina
YLR222C	-	98	30.184	ENSMLEG00000043359	TBL3	96	30.184	Mandrillus_leucophaeus
YLR222C	-	98	32.073	ENSMGAG00000005694	TBL3	95	32.147	Meleagris_gallopavo
YLR222C	-	98	30.675	ENSMAUG00000008718	Tbl3	95	30.675	Mesocricetus_auratus
YLR222C	-	98	30.429	ENSMICG00000012787	TBL3	84	30.307	Microcebus_murinus
YLR222C	-	98	31.043	ENSMOCG00000019634	Tbl3	95	30.798	Microtus_ochrogaster
YLR222C	-	98	30.120	ENSMMOG00000007551	tbl3	87	30.120	Mola_mola
YLR222C	-	98	30.798	ENSMODG00000016091	TBL3	95	30.798	Monodelphis_domestica
YLR222C	-	98	31.043	MGP_CAROLIEiJ_G0021199	Tbl3	95	31.166	Mus_caroli
YLR222C	-	98	31.043	ENSMUSG00000040688	Tbl3	99	35.370	Mus_musculus
YLR222C	-	98	31.043	MGP_PahariEiJ_G0023516	Tbl3	95	31.166	Mus_pahari
YLR222C	-	98	30.920	MGP_SPRETEiJ_G0022110	Tbl3	100	35.048	Mus_spretus
YLR222C	-	98	30.258	ENSMPUG00000015545	TBL3	95	30.258	Mustela_putorius_furo
YLR222C	-	98	30.381	ENSMLUG00000011684	TBL3	95	30.381	Myotis_lucifugus
YLR222C	-	96	30.137	ENSNGAG00000002428	Tbl3	91	30.137	Nannospalax_galili
YLR222C	-	98	30.061	ENSNLEG00000008889	TBL3	94	30.061	Nomascus_leucogenys
YLR222C	-	98	30.061	ENSODEG00000013930	TBL3	96	30.061	Octodon_degus
YLR222C	-	99	30.299	ENSOMEG00000012684	tbl3	85	30.299	Oryzias_melastigma
YLR222C	-	98	30.061	ENSOGAG00000010104	TBL3	95	30.061	Otolemur_garnettii
YLR222C	-	99	30.182	ENSPPAG00000041939	TBL3	96	30.182	Pan_paniscus
YLR222C	-	98	30.798	ENSPPRG00000000893	TBL3	95	30.798	Panthera_pardus
YLR222C	-	59	32.851	ENSPTIG00000010377	TBL3	95	32.851	Panthera_tigris_altaica
YLR222C	-	99	30.061	ENSPTRG00000007621	TBL3	96	30.061	Pan_troglodytes
YLR222C	-	98	30.184	ENSPANG00000007024	TBL3	94	30.184	Papio_anubis
YLR222C	-	98	31.022	ENSPSIG00000013024	TBL3	95	31.022	Pelodiscus_sinensis
YLR222C	-	98	31.242	ENSPEMG00000009768	Tbl3	97	31.242	Peromyscus_maniculatus_bairdii
YLR222C	-	98	31.288	ENSPCIG00000021811	TBL3	95	31.288	Phascolarctos_cinereus
YLR222C	-	98	30.061	ENSPPYG00000006977	TBL3	94	30.061	Pongo_abelii
YLR222C	-	98	30.061	ENSPCOG00000019749	TBL3	94	30.061	Propithecus_coquereli
YLR222C	-	98	31.043	ENSPVAG00000016710	TBL3	96	31.043	Pteropus_vampyrus
YLR222C	-	99	30.705	ENSPNAG00000017527	tbl3	97	30.061	Pygocentrus_nattereri
YLR222C	-	98	31.043	ENSRNOG00000013429	Tbl3	95	31.043	Rattus_norvegicus
YLR222C	-	98	30.307	ENSSBOG00000013923	TBL3	94	30.307	Saimiri_boliviensis_boliviensis
YLR222C	-	98	31.495	ENSSHAG00000015266	TBL3	95	31.495	Sarcophilus_harrisii
YLR222C	-	98	33.738	ENSSPUG00000012939	TBL3	84	33.738	Sphenodon_punctatus
YLR222C	-	98	30.184	ENSSSCG00000037686	TBL3	95	30.061	Sus_scrofa
YLR222C	-	98	30.340	ENSTGUG00000006592	-	98	30.340	Taeniopygia_guttata
YLR222C	-	99	30.175	ENSTNIG00000018011	tbl3	98	30.168	Tetraodon_nigroviridis
YLR222C	-	98	30.061	ENSUAMG00000019276	TBL3	95	30.061	Ursus_americanus
YLR222C	-	98	30.025	ENSUMAG00000022149	TBL3	86	30.025	Ursus_maritimus
YLR222C	-	93	30.051	ENSXMAG00000014866	tbl3	92	30.051	Xiphophorus_maculatus