EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
YLR275W (Gene tree)
Gene ID
-
Gene Symbol
SMD2
Alias
-
Full Name
Core Sm protein Sm D2%3B part of heteroheptameric complex (with Smb1p%2C Smd1p%2C Smd3p%2C Sme1p%2C Smx3p%2C and Smx2p) that is part of the spliceosomal U1%2C U2%2C U4%2C and U5 snRNPs%3B homolog of human Sm D2
Gene Type
protein_coding
Species
Saccharomyces_cerevisiae
Status
confidence
Strand
Plus strand
Length
423 bases
Position
chrXII:694378-694800
Accession
S000004265
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
YLR275W_mRNALSMPF01423.224.7e-1811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
26595419Conserved mRNA-binding proteomes in eukaryotic organismsmRBPome & yeast2015 Nov 23Matia Gonzalez AMDOI: 10.1038/nsmb.3128
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
YLR275W_mRNA-333-YLR275W_mRNA110 (aa)-Q06217
Gene Model
Click here to download YLR275W's gene model file
Protein-Protein Interaction (PPI)

Clik here to download YLR275W's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
YLR275WSMD26134.328YLR438C-ALSM37434.328
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
YLR275WSMD29652.212ENSG00000125743SNRPD29360.000Homo_sapiens
YLR275WSMD29652.212ENSAPOG00000012310snrpd29552.679Acanthochromis_polyacanthus
YLR275WSMD29652.212ENSAMEG00000000818-9652.679Ailuropoda_melanoleuca
YLR275WSMD27656.044ENSACIG00000022689snrpd28156.818Amphilophus_citrinellus
YLR275WSMD29652.212ENSAOCG00000024413snrpd29552.679Amphiprion_ocellaris
YLR275WSMD29652.212ENSAPEG00000021711snrpd29552.679Amphiprion_percula
YLR275WSMD29951.724ENSATEG00000000868snrpd29751.724Anabas_testudineus
YLR275WSMD29652.212ENSACAG00000016779-9552.679Anolis_carolinensis
YLR275WSMD29550.893ENSANAG00000003063-9550.893Aotus_nancymaae
YLR275WSMD29650.442ENSANAG00000001612-9452.679Aotus_nancymaae
YLR275WSMD29650.893ENSANAG00000018193-9553.153Aotus_nancymaae
YLR275WSMD29551.786ENSANAG00000017079-9551.786Aotus_nancymaae
YLR275WSMD29652.212ENSACLG00000001746snrpd29552.679Astatotilapia_calliptera
YLR275WSMD29652.212ENSAMXG00000033526snrpd29552.679Astyanax_mexicanus
YLR275WSMD29652.212ENSBTAG00000012177SNRPD29552.679Bos_taurus
YLR275WSMD29950.000WBGene00004917snr-49750.000Caenorhabditis_elegans
YLR275WSMD29652.212ENSCJAG00000012413-9552.679Callithrix_jacchus
YLR275WSMD29651.327ENSCJAG00000044646-9551.786Callithrix_jacchus
YLR275WSMD29452.727ENSCJAG00000019291-9253.211Callithrix_jacchus
YLR275WSMD29650.442ENSCJAG00000041687-9550.893Callithrix_jacchus
YLR275WSMD29650.442ENSCJAG00000047147-9550.893Callithrix_jacchus
YLR275WSMD29652.212ENSCJAG00000044723-9552.679Callithrix_jacchus
YLR275WSMD29650.442ENSCJAG00000047157-9550.893Callithrix_jacchus
YLR275WSMD29445.455ENSCAFG00000000634-9245.872Canis_familiaris
YLR275WSMD29652.212ENSCAFG00000004403SNRPD29552.679Canis_familiaris
YLR275WSMD29445.455ENSCAFG00020002921-9245.872Canis_lupus_dingo
YLR275WSMD27656.044ENSCAFG00020003532-7956.818Canis_lupus_dingo
YLR275WSMD29752.632ENSCHIG00000015755-9652.632Capra_hircus
YLR275WSMD29751.754ENSTSYG00000011207-9552.679Carlito_syrichta
YLR275WSMD28448.980ENSTSYG00000031156-8546.939Carlito_syrichta
YLR275WSMD29547.748ENSCAPG00000006559-9549.550Cavia_aperea
YLR275WSMD29652.212ENSCAPG00000011695-9452.679Cavia_aperea
YLR275WSMD29652.212ENSCPOG00000035154-9552.679Cavia_porcellus
YLR275WSMD29646.018ENSCPOG00000025735-9546.429Cavia_porcellus
YLR275WSMD29652.212ENSCCAG00000011183-9552.679Cebus_capucinus
YLR275WSMD29652.212ENSCCAG00000035396SNRPD29552.679Cebus_capucinus
YLR275WSMD26060.274ENSCCAG00000030191-7160.274Cebus_capucinus
YLR275WSMD26065.152ENSCCAG00000020956-6765.152Cebus_capucinus
YLR275WSMD29650.442ENSCCAG00000012011-9550.893Cebus_capucinus
YLR275WSMD28549.505ENSCATG00000040410-9648.438Cercocebus_atys
YLR275WSMD29651.327ENSCATG00000005272-9551.786Cercocebus_atys
YLR275WSMD29650.442ENSCATG00000031591-9550.893Cercocebus_atys
YLR275WSMD27643.956ENSCLAG00000017381-7946.591Chinchilla_lanigera
YLR275WSMD29652.212ENSCLAG00000000931-9552.679Chinchilla_lanigera
YLR275WSMD29543.243ENSCLAG00000001183-9443.243Chinchilla_lanigera
YLR275WSMD29652.212ENSCSAG00000003157SNRPD29552.679Chlorocebus_sabaeus
YLR275WSMD29652.212ENSCPBG00000007259SNRPD29552.679Chrysemys_picta_bellii
YLR275WSMD29357.798ENSCING00000020031-9259.633Ciona_intestinalis
YLR275WSMD29058.491ENSCSAVG00000003527-8660.377Ciona_savignyi
YLR275WSMD29651.327ENSCANG00000038535-9551.786Colobus_angolensis_palliatus
YLR275WSMD25250.877ENSCANG00000035956-7841.176Colobus_angolensis_palliatus
YLR275WSMD29644.248ENSCGRG00001003078-9544.643Cricetulus_griseus_chok1gshd
YLR275WSMD29451.818ENSCGRG00000011635-9352.294Cricetulus_griseus_crigri
YLR275WSMD29652.212ENSCSEG00000002230snrpd29552.679Cynoglossus_semilaevis
YLR275WSMD29951.724ENSCVAG00000010204SNRPD29651.724Cyprinodon_variegatus
YLR275WSMD29652.212ENSCVAG00000014834snrpd29552.679Cyprinodon_variegatus
YLR275WSMD29652.212ENSDARG00000040440snrpd29552.679Danio_rerio
YLR275WSMD29652.212ENSDNOG00000002365-8852.679Dasypus_novemcinctus
YLR275WSMD29652.212ENSDORG00000001729Snrpd29652.679Dipodomys_ordii
YLR275WSMD29355.046FBgn0261789SmD29255.963Drosophila_melanogaster
YLR275WSMD29544.860ENSETEG00000002893-9544.860Echinops_telfairi
YLR275WSMD29751.754ENSEBUG00000002144snrpd29651.754Eptatretus_burgeri
YLR275WSMD29652.212ENSEASG00005014210-9552.679Equus_asinus_asinus
YLR275WSMD28639.604ENSEASG00005016910-7640.000Equus_asinus_asinus
YLR275WSMD27656.044ENSECAG00000007824SNRPD27756.818Equus_caballus
YLR275WSMD29652.212ENSELUG00000020393snrpd26352.679Esox_lucius
YLR275WSMD29652.212ENSFCAG00000022530-9552.679Felis_catus
YLR275WSMD28946.667ENSFCAG00000024879-6946.667Felis_catus
YLR275WSMD29652.212ENSFDAG00000015792SNRPD29552.679Fukomys_damarensis
YLR275WSMD29652.212ENSFHEG00000015591snrpd29552.679Fundulus_heteroclitus
YLR275WSMD29652.212ENSGMOG00000013857snrpd29552.679Gadus_morhua
YLR275WSMD29652.212ENSGAFG00000001246snrpd29552.679Gambusia_affinis
YLR275WSMD29652.212ENSGACG00000006697snrpd29552.679Gasterosteus_aculeatus
YLR275WSMD27651.163ENSGAGG00000017944SNRPD26051.163Gopherus_agassizii
YLR275WSMD29652.212ENSGGOG00000002350SNRPD29552.679Gorilla_gorilla
YLR275WSMD29652.212ENSHBUG00000004073snrpd29552.679Haplochromis_burtoni
YLR275WSMD29540.179ENSHGLG00000017154-9540.179Heterocephalus_glaber_female
YLR275WSMD29652.212ENSHGLG00000015364SNRPD29552.679Heterocephalus_glaber_female
YLR275WSMD29647.788ENSHGLG00100020606-6148.214Heterocephalus_glaber_male
YLR275WSMD29652.212ENSHGLG00100015694SNRPD29552.679Heterocephalus_glaber_male
YLR275WSMD29653.097ENSHCOG00000010973snrpd29553.571Hippocampus_comes
YLR275WSMD29652.212ENSIPUG00000001053snrpd29552.679Ictalurus_punctatus
YLR275WSMD29652.212ENSSTOG00000024377SNRPD29552.679Ictidomys_tridecemlineatus
YLR275WSMD29652.212ENSJJAG00000002622Snrpd29552.679Jaculus_jaculus
YLR275WSMD29652.212ENSKMAG00000001539snrpd29552.679Kryptolebias_marmoratus
YLR275WSMD29651.327ENSLBEG00000019436snrpd29551.786Labrus_bergylta
YLR275WSMD27656.044ENSLACG00000004720SNRPD28156.818Latimeria_chalumnae
YLR275WSMD29652.212ENSLOCG00000014824snrpd29552.679Lepisosteus_oculatus
YLR275WSMD29652.212ENSLAFG00000004205-9552.679Loxodonta_africana
YLR275WSMD29651.327ENSMFAG00000020148-9551.786Macaca_fascicularis
YLR275WSMD29652.212ENSMFAG00000045767-9552.679Macaca_fascicularis
YLR275WSMD29651.327ENSMFAG00000009957-9551.786Macaca_fascicularis
YLR275WSMD29651.327ENSMMUG00000032525-9551.786Macaca_mulatta
YLR275WSMD29651.327ENSMMUG00000032370-9551.786Macaca_mulatta
YLR275WSMD29447.273ENSMMUG00000030518-9247.706Macaca_mulatta
YLR275WSMD29846.552ENSMNEG00000039787-7552.809Macaca_nemestrina
YLR275WSMD29650.442ENSMNEG00000010649-9550.893Macaca_nemestrina
YLR275WSMD29551.786ENSMNEG00000021599-9551.786Macaca_nemestrina
YLR275WSMD29651.327ENSMLEG00000008325-9551.786Mandrillus_leucophaeus
YLR275WSMD29652.212ENSMAMG00000013925snrpd29552.679Mastacembelus_armatus
YLR275WSMD29652.212ENSMZEG00005013054snrpd29552.679Maylandia_zebra
YLR275WSMD29652.212ENSMAUG00000018849Snrpd29552.679Mesocricetus_auratus
YLR275WSMD29652.212ENSMICG00000031545SNRPD29552.679Microcebus_murinus
YLR275WSMD29651.327ENSMOCG00000017135-9551.786Microtus_ochrogaster
YLR275WSMD29652.212ENSMOCG00000017080Snrpd29552.679Microtus_ochrogaster
YLR275WSMD29651.327ENSMMOG00000004936snrpd29551.786Mola_mola
YLR275WSMD29652.212ENSMODG00000021539-9552.679Monodelphis_domestica
YLR275WSMD29652.212ENSMALG00000010608snrpd29552.679Monopterus_albus
YLR275WSMD29549.107MGP_CAROLIEiJ_G0018529-9549.107Mus_caroli
YLR275WSMD29652.212MGP_CAROLIEiJ_G0029275-9552.679Mus_caroli
YLR275WSMD29652.212ENSMUSG00000040824Snrpd29552.679Mus_musculus
YLR275WSMD29652.212MGP_PahariEiJ_G0021135-9552.679Mus_pahari
YLR275WSMD29548.649MGP_SPRETEiJ_G0019409-9550.450Mus_spretus
YLR275WSMD29652.212MGP_SPRETEiJ_G0030359Snrpd29552.679Mus_spretus
YLR275WSMD29652.212ENSMPUG00000005733-9352.679Mustela_putorius_furo
YLR275WSMD29450.000ENSMLUG00000030461-9450.000Myotis_lucifugus
YLR275WSMD29652.212ENSMLUG00000001306-9652.679Myotis_lucifugus
YLR275WSMD29739.474ENSMLUG00000026025-9739.474Myotis_lucifugus
YLR275WSMD29648.673ENSMLUG00000025417-9549.107Myotis_lucifugus
YLR275WSMD29551.351ENSMLUG00000026353-9151.818Myotis_lucifugus
YLR275WSMD28748.039ENSNGAG00000013160-6748.039Nannospalax_galili
YLR275WSMD29652.212ENSNGAG00000010411-9552.679Nannospalax_galili
YLR275WSMD29652.212ENSNBRG00000000805snrpd29552.679Neolamprologus_brichardi
YLR275WSMD29652.212ENSNLEG00000002274SNRPD29552.679Nomascus_leucogenys
YLR275WSMD29652.212ENSMEUG00000012031-9652.679Notamacropus_eugenii
YLR275WSMD29652.212ENSOPRG00000008321-9552.679Ochotona_princeps
YLR275WSMD29451.818ENSODEG00000019447-9252.294Octodon_degus
YLR275WSMD29951.724ENSODEG00000008857-9751.724Octodon_degus
YLR275WSMD29651.327ENSODEG00000020096-9551.786Octodon_degus
YLR275WSMD29652.212ENSODEG00000020094-9552.679Octodon_degus
YLR275WSMD29850.435ENSODEG00000012799-9350.435Octodon_degus
YLR275WSMD25545.000ENSODEG00000008077-8045.000Octodon_degus
YLR275WSMD25946.154ENSODEG00000011751-6046.875Octodon_degus
YLR275WSMD29652.212ENSODEG00000020139-9552.679Octodon_degus
YLR275WSMD29652.212ENSONIG00000005406snrpd29552.679Oreochromis_niloticus
YLR275WSMD29852.174ENSOANG00000000813-9352.174Ornithorhynchus_anatinus
YLR275WSMD29652.212ENSOCUG00000022402SNRPD29552.679Oryctolagus_cuniculus
YLR275WSMD29652.212ENSORLG00000026725snrpd29552.679Oryzias_latipes
YLR275WSMD29652.212ENSORLG00020011312snrpd29552.679Oryzias_latipes_hni
YLR275WSMD29652.212ENSORLG00015019579snrpd29552.679Oryzias_latipes_hsok
YLR275WSMD29652.212ENSOMEG00000012661snrpd29552.679Oryzias_melastigma
YLR275WSMD29652.212ENSOGAG00000030128-9652.679Otolemur_garnettii
YLR275WSMD29652.212ENSOARG00000010203-9552.679Ovis_aries
YLR275WSMD29650.442ENSOARG00000016742-9550.893Ovis_aries
YLR275WSMD29652.212ENSPPAG00000038031SNRPD29552.679Pan_paniscus
YLR275WSMD29652.212ENSPPRG00000012309SNRPD29552.679Panthera_pardus
YLR275WSMD29148.113ENSPPRG00000000040-8648.571Panthera_pardus
YLR275WSMD27656.044ENSPTIG00000006666-8156.818Panthera_tigris_altaica
YLR275WSMD26639.726ENSPTIG00000000935-7239.726Panthera_tigris_altaica
YLR275WSMD29652.212ENSPTRG00000011162SNRPD29552.679Pan_troglodytes
YLR275WSMD29652.212ENSPANG00000017743-9552.679Papio_anubis
YLR275WSMD29652.212ENSPANG00000008802-9552.679Papio_anubis
YLR275WSMD29652.212ENSPKIG00000001110snrpd29552.679Paramormyrops_kingsleyae
YLR275WSMD27656.044ENSPSIG00000015823-8156.818Pelodiscus_sinensis
YLR275WSMD29651.327ENSPMGG00000016148snrpd29651.786Periophthalmus_magnuspinnatus
YLR275WSMD29652.212ENSPEMG00000004117-9452.679Peromyscus_maniculatus_bairdii
YLR275WSMD29648.673ENSPEMG00000009398-9549.107Peromyscus_maniculatus_bairdii
YLR275WSMD29652.212ENSPCIG00000022986SNRPD29552.679Phascolarctos_cinereus
YLR275WSMD29652.212ENSPFOG00000016809snrpd29552.679Poecilia_formosa
YLR275WSMD29652.212ENSPLAG00000010725snrpd29552.679Poecilia_latipinna
YLR275WSMD29652.212ENSPMEG00000000107snrpd29552.679Poecilia_mexicana
YLR275WSMD29254.630ENSPREG00000004078snrpd29454.630Poecilia_reticulata
YLR275WSMD29652.212ENSPPYG00000010129SNRPD29552.679Pongo_abelii
YLR275WSMD29652.212ENSPCAG00000016818SNRPD29552.679Procavia_capensis
YLR275WSMD29652.212ENSPCOG00000028811-9552.679Propithecus_coquereli
YLR275WSMD29652.212ENSPCOG00000001429-9552.679Propithecus_coquereli
YLR275WSMD29652.212ENSPVAG00000001345-9652.679Pteropus_vampyrus
YLR275WSMD29652.212ENSPNYG00000011826snrpd29552.679Pundamilia_nyererei
YLR275WSMD29652.212ENSPNAG00000025554snrpd29552.679Pygocentrus_nattereri
YLR275WSMD29652.212ENSRNOG00000015844Snrpd29552.679Rattus_norvegicus
YLR275WSMD29651.327ENSRNOG00000048758Snrpd2l9551.786Rattus_norvegicus
YLR275WSMD29652.212ENSRBIG00000040969SNRPD29552.679Rhinopithecus_bieti
YLR275WSMD29547.619ENSRBIG00000032406-9449.533Rhinopithecus_bieti
YLR275WSMD29344.118ENSRBIG00000032742-9146.535Rhinopithecus_bieti
YLR275WSMD29652.212ENSRROG00000034764SNRPD29552.679Rhinopithecus_roxellana
YLR275WSMD29546.667ENSRROG00000030974-9448.598Rhinopithecus_roxellana
YLR275WSMD29551.786ENSSBOG00000019992-7751.786Saimiri_boliviensis_boliviensis
YLR275WSMD29652.212ENSSBOG00000009827-9552.679Saimiri_boliviensis_boliviensis
YLR275WSMD29652.212ENSSBOG00000035164-9552.679Saimiri_boliviensis_boliviensis
YLR275WSMD29552.679ENSSBOG00000017764-9453.153Saimiri_boliviensis_boliviensis
YLR275WSMD29651.327ENSSHAG00000003772-9551.786Sarcophilus_harrisii
YLR275WSMD29652.212ENSSFOG00015016069-9552.679Scleropages_formosus
YLR275WSMD29652.212ENSSFOG00015022535snrpd29552.679Scleropages_formosus
YLR275WSMD29653.097ENSSMAG00000003422snrpd29553.571Scophthalmus_maximus
YLR275WSMD29652.212ENSSDUG00000005519snrpd29552.679Seriola_dumerili
YLR275WSMD29652.212ENSSLDG00000009397snrpd29552.679Seriola_lalandi_dorsalis
YLR275WSMD29652.212ENSSARG00000009167-9652.679Sorex_araneus
YLR275WSMD29652.212ENSSPAG00000015767snrpd29552.679Stegastes_partitus
YLR275WSMD26641.096ENSSSCG00000040417-5251.020Sus_scrofa
YLR275WSMD29652.212ENSSSCG00000033500SNRPD29552.679Sus_scrofa
YLR275WSMD29652.212ENSTRUG00000023014snrpd29552.679Takifugu_rubripes
YLR275WSMD28548.000ENSTNIG00000011736snrpd29148.485Tetraodon_nigroviridis
YLR275WSMD29652.212ENSTBEG00000001752SNRPD29552.679Tupaia_belangeri
YLR275WSMD29652.212ENSTTRG00000014299-9552.679Tursiops_truncatus
YLR275WSMD29652.212ENSUAMG00000023173SNRPD29552.679Ursus_americanus
YLR275WSMD26743.243ENSUAMG00000022454-6643.210Ursus_americanus
YLR275WSMD26743.243ENSUMAG00000001547-6643.210Ursus_maritimus
YLR275WSMD29652.212ENSUMAG00000023685-9552.679Ursus_maritimus
YLR275WSMD27656.044ENSVVUG00000003181-7956.818Vulpes_vulpes
YLR275WSMD29446.364ENSVVUG00000016748-9246.789Vulpes_vulpes
YLR275WSMD29652.212ENSXETG00000002173snrpd29652.679Xenopus_tropicalis
YLR275WSMD29951.724ENSXCOG00000001082snrpd29251.724Xiphophorus_couchianus
YLR275WSMD29652.212ENSXMAG00000001018snrpd29552.679Xiphophorus_maculatus

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