EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YLR276C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: DEAD-box protein required for 27S rRNA processing%3B exhibits DNA%2C RNA and DNA/RNA helicase activities%3B ATPase activity shows preference for DNA over RNA%3B DNA helicase activity abolished by mutation in RNA-binding domain
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1785 bases
Position: chrXII:695046-696830
Accession: S000004266
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR276C_mRNA	ResIII	PF04851.15	9.5e-07	1	1
YLR276C_mRNA	DEAD	PF00270.29	1.3e-42	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR276C_mRNA	-	1785	-	YLR276C_mRNA	594 (aa)	-	Q06218

Gene Model

Click here to download YLR276C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YLR276C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YLR276C	-	60	52.273	YOR204W	DED1	59	52.273
YLR276C	-	71	30.913	YHR065C	-	71	30.913
YLR276C	-	60	54.545	YPL119C	DBP1	58	54.545
YLR276C	-	54	36.620	YDL084W	-	66	36.620

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR276C	-	98	42.295	ENSG00000136271	DDX56	96	46.083	Homo_sapiens
YLR276C	-	97	43.761	ENSAPOG00000017113	ddx56	96	42.564	Acanthochromis_polyacanthus
YLR276C	-	91	42.541	ENSAMEG00000017711	DDX56	97	41.409	Ailuropoda_melanoleuca
YLR276C	-	90	40.782	ENSACIG00000013747	ddx56	95	46.067	Amphilophus_citrinellus
YLR276C	-	89	46.053	ENSAOCG00000018059	ddx56	92	44.737	Amphiprion_ocellaris
YLR276C	-	87	45.857	ENSAOCG00000015447	-	86	44.701	Amphiprion_ocellaris
YLR276C	-	97	43.590	ENSAPEG00000007267	ddx56	96	43.077	Amphiprion_percula
YLR276C	-	97	43.836	ENSATEG00000005279	ddx56	96	43.664	Anabas_testudineus
YLR276C	-	90	47.135	ENSACLG00000020113	ddx56	89	46.679	Astatotilapia_calliptera
YLR276C	-	96	45.359	ENSAMXG00000019357	ddx56	98	44.123	Astyanax_mexicanus
YLR276C	-	91	43.094	ENSBTAG00000010602	DDX56	97	42.096	Bos_taurus
YLR276C	-	97	36.286	WBGene00016073	C24H12.4	86	35.714	Caenorhabditis_elegans
YLR276C	-	98	42.295	ENSCJAG00000012233	DDX56	96	45.622	Callithrix_jacchus
YLR276C	-	75	40.899	ENSCAFG00000029295	DDX56	97	39.669	Canis_familiaris
YLR276C	-	91	42.357	ENSCAFG00020019695	DDX56	94	41.549	Canis_lupus_dingo
YLR276C	-	91	42.541	ENSCHIG00000014261	DDX56	97	41.581	Capra_hircus
YLR276C	-	91	42.726	ENSTSYG00000008048	DDX56	96	44.333	Carlito_syrichta
YLR276C	-	85	41.188	ENSCAPG00000006286	DDX56	96	41.188	Cavia_aperea
YLR276C	-	98	42.268	ENSCPOG00000003359	DDX56	97	42.268	Cavia_porcellus
YLR276C	-	91	43.278	ENSCCAG00000025303	DDX56	96	45.116	Cebus_capucinus
YLR276C	-	98	42.440	ENSCATG00000039389	DDX56	96	46.512	Cercocebus_atys
YLR276C	-	98	42.096	ENSCLAG00000007666	DDX56	97	42.096	Chinchilla_lanigera
YLR276C	-	97	42.586	ENSCSAG00000015636	DDX56	96	42.586	Chlorocebus_sabaeus
YLR276C	-	98	40.709	ENSCPBG00000024556	DDX56	97	40.068	Chrysemys_picta_bellii
YLR276C	-	92	43.898	ENSCING00000005185	-	99	44.080	Ciona_intestinalis
YLR276C	-	90	44.403	ENSCSAVG00000011266	-	99	44.403	Ciona_savignyi
YLR276C	-	98	42.295	ENSCANG00000028187	DDX56	96	46.083	Colobus_angolensis_palliatus
YLR276C	-	97	42.388	ENSCGRG00001019019	Ddx56	98	41.768	Cricetulus_griseus_chok1gshd
YLR276C	-	97	42.388	ENSCGRG00000011870	Ddx56	98	41.768	Cricetulus_griseus_crigri
YLR276C	-	97	45.000	ENSCSEG00000008368	ddx56	96	44.828	Cynoglossus_semilaevis
YLR276C	-	90	46.741	ENSCVAG00000006499	ddx56	89	46.182	Cyprinodon_variegatus
YLR276C	-	98	44.048	ENSDARG00000020913	ddx56	97	43.973	Danio_rerio
YLR276C	-	85	40.784	ENSDNOG00000036526	DDX56	95	40.784	Dasypus_novemcinctus
YLR276C	-	97	38.966	FBgn0001565	Hlc	95	38.621	Drosophila_melanogaster
YLR276C	-	71	38.005	ENSETEG00000002969	-	72	38.005	Echinops_telfairi
YLR276C	-	96	43.130	ENSEBUG00000009986	ddx56	97	42.783	Eptatretus_burgeri
YLR276C	-	91	43.066	ENSEASG00005017795	DDX56	97	42.249	Equus_asinus_asinus
YLR276C	-	91	43.066	ENSECAG00000019897	DDX56	96	45.000	Equus_caballus
YLR276C	-	83	41.212	ENSEEUG00000004849	DDX56	95	40.808	Erinaceus_europaeus
YLR276C	-	98	44.369	ENSELUG00000004150	ddx56	97	43.271	Esox_lucius
YLR276C	-	90	44.156	ENSFCAG00000010261	DDX56	95	45.270	Felis_catus
YLR276C	-	91	42.647	ENSFDAG00000007128	DDX56	97	41.681	Fukomys_damarensis
YLR276C	-	96	45.128	ENSFHEG00000018008	ddx56	99	44.310	Fundulus_heteroclitus
YLR276C	-	96	43.310	ENSGAFG00000006906	ddx56	98	42.958	Gambusia_affinis
YLR276C	-	96	42.087	ENSGAGG00000006789	DDX56	94	42.087	Gopherus_agassizii
YLR276C	-	98	42.295	ENSGGOG00000012031	DDX56	96	46.083	Gorilla_gorilla
YLR276C	-	90	44.177	ENSHBUG00000015246	ddx56	90	43.438	Haplochromis_burtoni
YLR276C	-	98	42.096	ENSHGLG00000017271	DDX56	97	42.096	Heterocephalus_glaber_female
YLR276C	-	98	42.096	ENSHGLG00100015731	DDX56	97	42.096	Heterocephalus_glaber_male
YLR276C	-	97	44.597	ENSHCOG00000001685	ddx56	96	44.330	Hippocampus_comes
YLR276C	-	97	44.710	ENSIPUG00000006602	ddx56	95	44.369	Ictalurus_punctatus
YLR276C	-	96	41.980	ENSSTOG00000000464	DDX56	98	41.980	Ictidomys_tridecemlineatus
YLR276C	-	98	42.440	ENSJJAG00000014269	Ddx56	98	41.753	Jaculus_jaculus
YLR276C	-	97	45.189	ENSKMAG00000016611	ddx56	96	44.007	Kryptolebias_marmoratus
YLR276C	-	91	45.120	ENSLBEG00000026281	ddx56	98	43.363	Labrus_bergylta
YLR276C	-	97	43.493	ENSLACG00000015551	DDX56	94	42.979	Latimeria_chalumnae
YLR276C	-	98	44.178	ENSLOCG00000015185	ddx56	97	44.082	Lepisosteus_oculatus
YLR276C	-	97	41.278	ENSLAFG00000018206	DDX56	96	41.278	Loxodonta_africana
YLR276C	-	98	42.440	ENSMFAG00000041001	DDX56	96	46.512	Macaca_fascicularis
YLR276C	-	98	42.612	ENSMMUG00000002645	DDX56	96	46.512	Macaca_mulatta
YLR276C	-	98	42.440	ENSMNEG00000028492	DDX56	96	46.512	Macaca_nemestrina
YLR276C	-	98	42.268	ENSMLEG00000043591	DDX56	96	46.047	Mandrillus_leucophaeus
YLR276C	-	91	46.961	ENSMAMG00000007776	ddx56	97	45.025	Mastacembelus_armatus
YLR276C	-	90	47.135	ENSMZEG00005009813	ddx56	89	46.679	Maylandia_zebra
YLR276C	-	97	42.393	ENSMICG00000005550	DDX56	95	45.045	Microcebus_murinus
YLR276C	-	91	43.646	ENSMOCG00000016782	Ddx56	97	42.612	Microtus_ochrogaster
YLR276C	-	90	44.860	ENSMMOG00000009654	ddx56	95	44.673	Mola_mola
YLR276C	-	97	39.759	ENSMODG00000016137	DDX56	95	39.759	Monodelphis_domestica
YLR276C	-	66	41.750	ENSMALG00000016910	ddx56	98	41.250	Monopterus_albus
YLR276C	-	98	42.906	MGP_CAROLIEiJ_G0016069	Ddx56	97	42.735	Mus_caroli
YLR276C	-	98	42.612	ENSMUSG00000004393	Ddx56	97	42.440	Mus_musculus
YLR276C	-	98	42.564	MGP_PahariEiJ_G0016822	Ddx56	97	42.393	Mus_pahari
YLR276C	-	98	42.612	MGP_SPRETEiJ_G0016911	Ddx56	97	42.440	Mus_spretus
YLR276C	-	98	40.792	ENSMPUG00000018196	DDX56	85	40.448	Mustela_putorius_furo
YLR276C	-	91	42.805	ENSMLUG00000003509	DDX56	97	42.007	Myotis_lucifugus
YLR276C	-	98	42.096	ENSNGAG00000018785	Ddx56	97	42.096	Nannospalax_galili
YLR276C	-	90	44.547	ENSNBRG00000002656	ddx56	90	43.808	Neolamprologus_brichardi
YLR276C	-	98	42.123	ENSNLEG00000003816	DDX56	96	44.700	Nomascus_leucogenys
YLR276C	-	89	37.266	ENSMEUG00000006788	DDX56	98	37.218	Notamacropus_eugenii
YLR276C	-	97	40.517	ENSOPRG00000000292	-	97	40.000	Ochotona_princeps
YLR276C	-	67	42.145	ENSODEG00000014807	DDX56	99	42.145	Octodon_degus
YLR276C	-	97	45.172	ENSONIG00000011509	ddx56	96	45.439	Oreochromis_niloticus
YLR276C	-	69	47.368	ENSOANG00000006320	-	78	47.368	Ornithorhynchus_anatinus
YLR276C	-	72	36.597	ENSOANG00000015987	-	93	36.597	Ornithorhynchus_anatinus
YLR276C	-	91	42.989	ENSOCUG00000022918	DDX56	97	41.652	Oryctolagus_cuniculus
YLR276C	-	97	43.919	ENSORLG00000001434	ddx56	96	43.027	Oryzias_latipes
YLR276C	-	97	44.218	ENSORLG00020015718	ddx56	93	43.027	Oryzias_latipes_hni
YLR276C	-	97	43.919	ENSORLG00015003004	ddx56	92	43.027	Oryzias_latipes_hsok
YLR276C	-	90	45.572	ENSOMEG00000022072	ddx56	96	42.399	Oryzias_melastigma
YLR276C	-	97	41.349	ENSOGAG00000009981	DDX56	96	41.349	Otolemur_garnettii
YLR276C	-	91	43.094	ENSOARG00000015240	DDX56	99	40.546	Ovis_aries
YLR276C	-	98	41.315	ENSPPAG00000029147	DDX56	97	40.978	Pan_paniscus
YLR276C	-	98	34.576	ENSPPAG00000031263	-	97	34.407	Pan_paniscus
YLR276C	-	90	43.599	ENSPPRG00000014594	DDX56	95	44.932	Panthera_pardus
YLR276C	-	78	42.275	ENSPTIG00000019500	DDX56	87	43.779	Panthera_tigris_altaica
YLR276C	-	98	42.295	ENSPTRG00000019147	DDX56	96	46.083	Pan_troglodytes
YLR276C	-	92	35.063	ENSPTRG00000052765	-	97	35.063	Pan_troglodytes
YLR276C	-	98	42.268	ENSPANG00000002446	DDX56	96	46.047	Papio_anubis
YLR276C	-	98	43.719	ENSPKIG00000018998	ddx56	96	43.098	Paramormyrops_kingsleyae
YLR276C	-	90	45.572	ENSPMGG00000017421	ddx56	93	45.203	Periophthalmus_magnuspinnatus
YLR276C	-	97	42.784	ENSPCIG00000009336	DDX56	95	46.575	Phascolarctos_cinereus
YLR276C	-	90	45.624	ENSPFOG00000018658	ddx56	89	45.911	Poecilia_formosa
YLR276C	-	96	43.860	ENSPLAG00000019208	ddx56	98	43.684	Poecilia_latipinna
YLR276C	-	96	43.684	ENSPMEG00000001775	ddx56	98	43.958	Poecilia_mexicana
YLR276C	-	90	46.555	ENSPREG00000015142	ddx56	89	46.097	Poecilia_reticulata
YLR276C	-	98	42.123	ENSPPYG00000017591	DDX56	97	41.781	Pongo_abelii
YLR276C	-	95	40.564	ENSPCAG00000011499	DDX56	98	40.564	Procavia_capensis
YLR276C	-	98	41.438	ENSPCOG00000024864	DDX56	96	44.240	Propithecus_coquereli
YLR276C	-	80	44.131	ENSPVAG00000000791	DDX56	84	44.131	Pteropus_vampyrus
YLR276C	-	90	47.320	ENSPNYG00000019212	ddx56	89	46.863	Pundamilia_nyererei
YLR276C	-	98	44.992	ENSPNAG00000025446	ddx56	98	44.576	Pygocentrus_nattereri
YLR276C	-	98	43.029	ENSRNOG00000004670	Ddx56	97	42.857	Rattus_norvegicus
YLR276C	-	98	42.123	ENSRBIG00000030140	DDX56	96	46.083	Rhinopithecus_bieti
YLR276C	-	98	42.051	ENSRROG00000044428	DDX56	96	46.083	Rhinopithecus_roxellana
YLR276C	-	98	42.123	ENSSBOG00000034339	DDX56	96	45.622	Saimiri_boliviensis_boliviensis
YLR276C	-	85	40.668	ENSSHAG00000016615	DDX56	96	40.079	Sarcophilus_harrisii
YLR276C	-	98	42.833	ENSSFOG00015012795	ddx56	97	42.470	Scleropages_formosus
YLR276C	-	91	45.173	ENSSMAG00000011280	ddx56	97	44.048	Scophthalmus_maximus
YLR276C	-	91	45.956	ENSSDUG00000023597	ddx56	97	43.266	Seriola_dumerili
YLR276C	-	91	45.588	ENSSLDG00000018369	ddx56	97	42.929	Seriola_lalandi_dorsalis
YLR276C	-	70	50.847	ENSSARG00000014363	DDX56	76	47.059	Sorex_araneus
YLR276C	-	99	40.735	ENSSPUG00000000784	DDX56	97	40.735	Sphenodon_punctatus
YLR276C	-	90	45.455	ENSSPAG00000009392	ddx56	97	43.894	Stegastes_partitus
YLR276C	-	97	42.388	ENSSSCG00000016745	DDX56	97	42.734	Sus_scrofa
YLR276C	-	97	44.828	ENSTRUG00000018623	ddx56	97	43.958	Takifugu_rubripes
YLR276C	-	97	43.952	ENSTNIG00000013593	ddx56	97	43.271	Tetraodon_nigroviridis
YLR276C	-	98	42.440	ENSTBEG00000007119	DDX56	97	42.440	Tupaia_belangeri
YLR276C	-	78	42.489	ENSTTRG00000010552	DDX56	96	41.584	Tursiops_truncatus
YLR276C	-	91	42.541	ENSUAMG00000014194	DDX56	97	41.409	Ursus_americanus
YLR276C	-	91	42.541	ENSUMAG00000009666	DDX56	97	41.409	Ursus_maritimus
YLR276C	-	91	42.541	ENSVVUG00000011905	DDX56	97	41.409	Vulpes_vulpes
YLR276C	-	97	43.101	ENSXETG00000019000	ddx56	97	43.027	Xenopus_tropicalis
YLR276C	-	96	43.380	ENSXCOG00000017413	ddx56	98	43.031	Xiphophorus_couchianus
YLR276C	-	97	44.330	ENSXMAG00000018749	ddx56	96	43.643	Xiphophorus_maculatus