EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YLR277C (Gene tree)
Gene ID: -
Gene Symbol: YSH1
Alias: BRR5
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Minus strand
Length: 2340
Position: chrXII:697156-699495
Accession: S000004267
RBP type: canonical RBP
Summary: Endoribonuclease%3B subunit of the mRNA cleavage and polyadenylation specificity complex%3B required for 3' processing%2C splicing%2C and transcriptional termination of mRNAs and snoRNAs%3B protein abundance increases in response to DNA replication stress%3B YSH1 has a paralog%2C SYC1%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR277C_mRNA	CPSF73-100_C	PF11718.8	1.1e-55	1	1
YLR277C_mRNA	Beta-Casp	PF10996.8	5.5e-29	1	1
YLR277C_mRNA	Lactamase_B	PF00753.27	2.8e-24	1	1
YLR277C_mRNA	RMMBL	PF07521.12	1.9e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR277C_mRNA	-	2340	-	YLR277C_mRNA	779 (aa)	-	Q06224

Gene Model

Click here to download YLR277C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YLR277C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR277C	YSH1	95	40.671	ENSG00000119203	CPSF3	100	54.861	Homo_sapiens
YLR277C	YSH1	97	39.788	ENSAPOG00000022087	cpsf3	95	39.788	Acanthochromis_polyacanthus
YLR277C	YSH1	61	52.110	ENSAPOG00000012241	CPSF3	89	46.939	Acanthochromis_polyacanthus
YLR277C	YSH1	84	43.531	ENSAMEG00000008493	CPSF3	84	43.531	Ailuropoda_melanoleuca
YLR277C	YSH1	78	41.993	ENSACIG00000023663	CPSF3	83	41.993	Amphilophus_citrinellus
YLR277C	YSH1	78	41.544	ENSACIG00000009846	cpsf3	83	41.544	Amphilophus_citrinellus
YLR277C	YSH1	97	39.894	ENSAOCG00000022056	cpsf3	95	39.894	Amphiprion_ocellaris
YLR277C	YSH1	85	43.182	ENSAOCG00000010077	CPSF3	86	41.967	Amphiprion_ocellaris
YLR277C	YSH1	85	43.182	ENSAPEG00000021167	CPSF3	86	43.182	Amphiprion_percula
YLR277C	YSH1	97	39.894	ENSAPEG00000019526	cpsf3	95	40.515	Amphiprion_percula
YLR277C	YSH1	85	42.640	ENSATEG00000014525	CPSF3	86	42.640	Anabas_testudineus
YLR277C	YSH1	98	39.300	ENSATEG00000003959	cpsf3	97	39.300	Anabas_testudineus
YLR277C	YSH1	95	40.591	ENSAPLG00000006941	CPSF3	93	40.591	Anas_platyrhynchos
YLR277C	YSH1	89	40.115	ENSACAG00000001759	CPSF3	93	40.115	Anolis_carolinensis
YLR277C	YSH1	95	39.597	ENSANAG00000031254	CPSF3	95	39.597	Aotus_nancymaae
YLR277C	YSH1	90	41.051	ENSACLG00000014484	cpsf3	91	41.051	Astatotilapia_calliptera
YLR277C	YSH1	78	42.157	ENSACLG00000018846	CPSF3	83	42.157	Astatotilapia_calliptera
YLR277C	YSH1	94	40.489	ENSAMXG00000004786	cpsf3	91	40.489	Astyanax_mexicanus
YLR277C	YSH1	95	40.805	ENSBTAG00000019735	CPSF3	93	40.805	Bos_taurus
YLR277C	YSH1	86	42.285	WBGene00013460	cpsf-3	86	42.285	Caenorhabditis_elegans
YLR277C	YSH1	95	40.671	ENSCJAG00000006276	CPSF3	94	40.537	Callithrix_jacchus
YLR277C	YSH1	84	43.531	ENSCAFG00000003375	CPSF3	80	43.531	Canis_familiaris
YLR277C	YSH1	84	43.531	ENSCAFG00020026799	CPSF3	93	43.531	Canis_lupus_dingo
YLR277C	YSH1	95	40.805	ENSCHIG00000013973	CPSF3	93	40.805	Capra_hircus
YLR277C	YSH1	84	43.683	ENSTSYG00000002967	CPSF3	84	43.683	Carlito_syrichta
YLR277C	YSH1	95	40.323	ENSCAPG00000013851	CPSF3	96	40.323	Cavia_aperea
YLR277C	YSH1	95	40.403	ENSCPOG00000011299	CPSF3	93	40.403	Cavia_porcellus
YLR277C	YSH1	95	40.805	ENSCCAG00000036730	CPSF3	95	40.805	Cebus_capucinus
YLR277C	YSH1	85	43.393	ENSCATG00000014770	CPSF3	88	53.205	Cercocebus_atys
YLR277C	YSH1	95	40.403	ENSCLAG00000002727	CPSF3	93	40.403	Chinchilla_lanigera
YLR277C	YSH1	95	36.376	ENSCSAG00000007125	CPSF3	93	36.644	Chlorocebus_sabaeus
YLR277C	YSH1	95	40.940	ENSCPBG00000014074	CPSF3	92	40.940	Chrysemys_picta_bellii
YLR277C	YSH1	85	43.308	ENSCING00000007214	-	84	43.609	Ciona_intestinalis
YLR277C	YSH1	75	41.864	ENSCANG00000034435	CPSF3	78	41.864	Colobus_angolensis_palliatus
YLR277C	YSH1	95	40.805	ENSCGRG00001013134	Cpsf3	93	40.671	Cricetulus_griseus_chok1gshd
YLR277C	YSH1	95	40.805	ENSCGRG00000018319	Cpsf3	93	40.671	Cricetulus_griseus_crigri
YLR277C	YSH1	87	43.111	ENSCSEG00000002021	CPSF3	87	43.192	Cynoglossus_semilaevis
YLR277C	YSH1	85	43.636	ENSCVAG00000015067	CPSF3	84	43.636	Cyprinodon_variegatus
YLR277C	YSH1	97	40.132	ENSDARG00000027649	cpsf3	95	40.132	Danio_rerio
YLR277C	YSH1	95	40.885	ENSDNOG00000008940	CPSF3	89	40.885	Dasypus_novemcinctus
YLR277C	YSH1	84	43.683	ENSDORG00000014263	Cpsf3	88	43.683	Dipodomys_ordii
YLR277C	YSH1	86	41.256	FBgn0261065	Cpsf73	86	41.555	Drosophila_melanogaster
YLR277C	YSH1	92	35.146	ENSETEG00000003893	CPSF3	94	35.146	Echinops_telfairi
YLR277C	YSH1	84	43.359	ENSEBUG00000009018	cpsf3	81	43.359	Eptatretus_burgeri
YLR277C	YSH1	84	43.531	ENSEASG00005003970	CPSF3	84	43.531	Equus_asinus_asinus
YLR277C	YSH1	84	43.531	ENSECAG00000019911	CPSF3	93	43.531	Equus_caballus
YLR277C	YSH1	89	48.343	ENSEEUG00000015422	CPSF3	86	48.343	Erinaceus_europaeus
YLR277C	YSH1	85	43.008	ENSELUG00000013775	cpsf3	84	43.008	Esox_lucius
YLR277C	YSH1	95	40.805	ENSFCAG00000007852	CPSF3	96	40.470	Felis_catus
YLR277C	YSH1	93	40.055	ENSFALG00000006572	CPSF3	96	40.055	Ficedula_albicollis
YLR277C	YSH1	95	40.537	ENSFDAG00000006317	CPSF3	93	40.537	Fukomys_damarensis
YLR277C	YSH1	98	38.411	ENSFHEG00000014774	cpsf3	96	38.411	Fundulus_heteroclitus
YLR277C	YSH1	91	40.678	ENSGMOG00000003157	cpsf3	89	40.678	Gadus_morhua
YLR277C	YSH1	94	40.984	ENSGALG00000016424	CPSF3	93	40.172	Gallus_gallus
YLR277C	YSH1	92	37.413	ENSGAFG00000019449	cpsf3	97	37.413	Gambusia_affinis
YLR277C	YSH1	85	43.788	ENSGAFG00000008016	CPSF3	84	43.788	Gambusia_affinis
YLR277C	YSH1	68	36.484	ENSGAGG00000025583	CPSF3	87	36.295	Gopherus_agassizii
YLR277C	YSH1	95	40.000	ENSGGOG00000001757	CPSF3	88	53.079	Gorilla_gorilla
YLR277C	YSH1	50	35.309	ENSHBUG00000014332	CPSF3	79	35.309	Haplochromis_burtoni
YLR277C	YSH1	90	41.135	ENSHBUG00000001188	cpsf3	88	41.135	Haplochromis_burtoni
YLR277C	YSH1	95	40.268	ENSHGLG00000000666	CPSF3	93	40.268	Heterocephalus_glaber_female
YLR277C	YSH1	95	40.268	ENSHGLG00100007765	CPSF3	93	40.268	Heterocephalus_glaber_male
YLR277C	YSH1	85	42.576	ENSHCOG00000007251	cpsf3	85	42.576	Hippocampus_comes
YLR277C	YSH1	85	43.333	ENSHCOG00000015957	CPSF3	83	43.333	Hippocampus_comes
YLR277C	YSH1	85	42.727	ENSIPUG00000023488	cpsf3	84	42.727	Ictalurus_punctatus
YLR277C	YSH1	95	40.726	ENSSTOG00000004476	CPSF3	93	40.726	Ictidomys_tridecemlineatus
YLR277C	YSH1	95	40.805	ENSJJAG00000023415	Cpsf3	93	40.805	Jaculus_jaculus
YLR277C	YSH1	94	39.919	ENSKMAG00000002806	cpsf3	92	39.919	Kryptolebias_marmoratus
YLR277C	YSH1	85	43.333	ENSKMAG00000007317	CPSF3	84	43.333	Kryptolebias_marmoratus
YLR277C	YSH1	85	40.212	ENSLBEG00000020569	cpsf3	84	40.212	Labrus_bergylta
YLR277C	YSH1	59	32.026	ENSLBEG00000015018	-	99	32.026	Labrus_bergylta
YLR277C	YSH1	85	43.247	ENSLBEG00000013492	CPSF3	88	43.247	Labrus_bergylta
YLR277C	YSH1	97	39.216	ENSLACG00000008308	CPSF3	95	39.216	Latimeria_chalumnae
YLR277C	YSH1	90	42.023	ENSLOCG00000016823	cpsf3	88	42.023	Lepisosteus_oculatus
YLR277C	YSH1	95	41.129	ENSLAFG00000009467	CPSF3	94	41.129	Loxodonta_africana
YLR277C	YSH1	95	40.805	ENSMFAG00000001339	CPSF3	88	53.205	Macaca_fascicularis
YLR277C	YSH1	93	40.331	ENSMMUG00000018038	CPSF3	86	53.205	Macaca_mulatta
YLR277C	YSH1	95	34.094	ENSMNEG00000039447	CPSF3	93	34.094	Macaca_nemestrina
YLR277C	YSH1	95	40.805	ENSMLEG00000026825	CPSF3	89	52.979	Mandrillus_leucophaeus
YLR277C	YSH1	78	41.941	ENSMAMG00000008835	CPSF3	84	41.941	Mastacembelus_armatus
YLR277C	YSH1	98	39.142	ENSMAMG00000003076	cpsf3	96	39.142	Mastacembelus_armatus
YLR277C	YSH1	90	41.135	ENSMZEG00005014358	cpsf3	88	41.135	Maylandia_zebra
YLR277C	YSH1	85	43.353	ENSMZEG00005006258	CPSF3	84	43.353	Maylandia_zebra
YLR277C	YSH1	93	41.040	ENSMGAG00000013995	CPSF3	94	41.040	Meleagris_gallopavo
YLR277C	YSH1	56	30.000	ENSMAUG00000000166	Cpsf3	92	30.000	Mesocricetus_auratus
YLR277C	YSH1	75	44.746	ENSMICG00000002363	CPSF3	80	43.772	Microcebus_murinus
YLR277C	YSH1	84	43.227	ENSMOCG00000020067	Cpsf3	88	43.227	Microtus_ochrogaster
YLR277C	YSH1	83	42.016	ENSMMOG00000018212	CPSF3	88	42.016	Mola_mola
YLR277C	YSH1	95	40.860	ENSMODG00000014703	CPSF3	93	40.860	Monodelphis_domestica
YLR277C	YSH1	85	42.598	ENSMALG00000016416	cpsf3	85	42.598	Monopterus_albus
YLR277C	YSH1	80	42.289	ENSMALG00000011474	CPSF3	89	42.289	Monopterus_albus
YLR277C	YSH1	95	40.537	MGP_CAROLIEiJ_G0017640	Cpsf3	93	40.537	Mus_caroli
YLR277C	YSH1	95	40.537	ENSMUSG00000054309	Cpsf3	96	55.328	Mus_musculus
YLR277C	YSH1	95	40.537	MGP_PahariEiJ_G0029397	Cpsf3	93	40.537	Mus_pahari
YLR277C	YSH1	95	40.537	MGP_SPRETEiJ_G0018481	Cpsf3	93	40.537	Mus_spretus
YLR277C	YSH1	84	43.531	ENSMPUG00000013213	CPSF3	84	43.531	Mustela_putorius_furo
YLR277C	YSH1	85	43.472	ENSMLUG00000010636	CPSF3	87	43.472	Myotis_lucifugus
YLR277C	YSH1	95	40.671	ENSNGAG00000019836	Cpsf3	93	40.671	Nannospalax_galili
YLR277C	YSH1	78	42.157	ENSNBRG00000010525	CPSF3	83	42.157	Neolamprologus_brichardi
YLR277C	YSH1	90	40.993	ENSNBRG00000004770	cpsf3	88	40.993	Neolamprologus_brichardi
YLR277C	YSH1	95	40.805	ENSNLEG00000013359	CPSF3	88	53.079	Nomascus_leucogenys
YLR277C	YSH1	76	55.102	ENSOPRG00000008902	CPSF3	75	55.102	Ochotona_princeps
YLR277C	YSH1	95	40.537	ENSODEG00000003129	CPSF3	93	40.537	Octodon_degus
YLR277C	YSH1	90	40.993	ENSONIG00000018812	cpsf3	88	40.993	Oreochromis_niloticus
YLR277C	YSH1	81	38.730	ENSOANG00000008577	CPSF3	95	38.730	Ornithorhynchus_anatinus
YLR277C	YSH1	84	43.683	ENSOCUG00000003728	CPSF3	84	43.683	Oryctolagus_cuniculus
YLR277C	YSH1	97	39.366	ENSORLG00000018854	cpsf3	95	39.366	Oryzias_latipes
YLR277C	YSH1	97	39.234	ENSORLG00020013331	cpsf3	95	39.234	Oryzias_latipes_hni
YLR277C	YSH1	97	39.366	ENSORLG00015011017	cpsf3	95	39.366	Oryzias_latipes_hsok
YLR277C	YSH1	91	40.586	ENSOMEG00000010647	cpsf3	86	40.586	Oryzias_melastigma
YLR277C	YSH1	84	38.508	ENSOGAG00000001680	CPSF3	84	38.508	Otolemur_garnettii
YLR277C	YSH1	95	40.805	ENSOARG00000015073	CPSF3	93	40.805	Ovis_aries
YLR277C	YSH1	95	40.805	ENSPPAG00000042457	CPSF3	88	53.079	Pan_paniscus
YLR277C	YSH1	84	43.531	ENSPPRG00000016790	CPSF3	96	40.331	Panthera_pardus
YLR277C	YSH1	84	43.531	ENSPTIG00000003920	CPSF3	95	40.000	Panthera_tigris_altaica
YLR277C	YSH1	95	40.805	ENSPTRG00000011638	CPSF3	88	53.079	Pan_troglodytes
YLR277C	YSH1	95	40.805	ENSPANG00000016798	CPSF3	88	53.205	Papio_anubis
YLR277C	YSH1	94	41.463	ENSPKIG00000023646	cpsf3	96	41.004	Paramormyrops_kingsleyae
YLR277C	YSH1	96	40.448	ENSPSIG00000016144	CPSF3	96	40.448	Pelodiscus_sinensis
YLR277C	YSH1	50	34.197	ENSPMGG00000015311	CPSF3	79	34.197	Periophthalmus_magnuspinnatus
YLR277C	YSH1	79	41.413	ENSPMGG00000006141	-	94	41.413	Periophthalmus_magnuspinnatus
YLR277C	YSH1	84	43.227	ENSPEMG00000017668	Cpsf3	93	40.403	Peromyscus_maniculatus_bairdii
YLR277C	YSH1	60	52.754	ENSPMAG00000004841	cpsf3	84	52.754	Petromyzon_marinus
YLR277C	YSH1	84	43.247	ENSPCIG00000009823	CPSF3	96	40.617	Phascolarctos_cinereus
YLR277C	YSH1	98	38.802	ENSPFOG00000015922	cpsf3	96	38.802	Poecilia_formosa
YLR277C	YSH1	85	43.636	ENSPFOG00000010418	-	84	43.636	Poecilia_formosa
YLR277C	YSH1	98	38.961	ENSPLAG00000000882	cpsf3	97	38.961	Poecilia_latipinna
YLR277C	YSH1	50	35.401	ENSPLAG00000021300	-	79	35.401	Poecilia_latipinna
YLR277C	YSH1	98	38.672	ENSPMEG00000018309	cpsf3	97	38.672	Poecilia_mexicana
YLR277C	YSH1	92	37.274	ENSPREG00000014875	cpsf3	97	37.274	Poecilia_reticulata
YLR277C	YSH1	74	46.459	ENSPREG00000004482	CPSF3	80	46.459	Poecilia_reticulata
YLR277C	YSH1	95	37.987	ENSPPYG00000012666	CPSF3	93	37.987	Pongo_abelii
YLR277C	YSH1	84	43.683	ENSPVAG00000005324	CPSF3	84	43.683	Pteropus_vampyrus
YLR277C	YSH1	90	41.135	ENSPNYG00000004405	cpsf3	88	41.135	Pundamilia_nyererei
YLR277C	YSH1	78	42.157	ENSPNYG00000021047	CPSF3	88	42.157	Pundamilia_nyererei
YLR277C	YSH1	90	41.584	ENSPNAG00000023060	cpsf3	89	41.584	Pygocentrus_nattereri
YLR277C	YSH1	95	40.537	ENSRNOG00000052418	Cpsf3	93	40.537	Rattus_norvegicus
YLR277C	YSH1	60	51.907	ENSRBIG00000041615	CPSF3	68	52.667	Rhinopithecus_bieti
YLR277C	YSH1	95	40.805	ENSRROG00000033792	CPSF3	94	40.726	Rhinopithecus_roxellana
YLR277C	YSH1	96	39.840	ENSSBOG00000027263	CPSF3	94	39.840	Saimiri_boliviensis_boliviensis
YLR277C	YSH1	95	40.726	ENSSHAG00000007024	CPSF3	93	40.726	Sarcophilus_harrisii
YLR277C	YSH1	90	42.188	ENSSFOG00015002108	cpsf3	91	41.405	Scleropages_formosus
YLR277C	YSH1	85	43.008	ENSSMAG00000020534	CPSF3	87	43.008	Scophthalmus_maximus
YLR277C	YSH1	85	42.922	ENSSDUG00000002828	cpsf3	83	42.922	Seriola_dumerili
YLR277C	YSH1	85	43.182	ENSSDUG00000018498	CPSF3	84	43.182	Seriola_dumerili
YLR277C	YSH1	85	42.685	ENSSLDG00000008469	cpsf3	90	42.685	Seriola_lalandi_dorsalis
YLR277C	YSH1	85	43.182	ENSSLDG00000005234	CPSF3	84	43.182	Seriola_lalandi_dorsalis
YLR277C	YSH1	65	59.794	ENSSARG00000005186	CPSF3	67	59.794	Sorex_araneus
YLR277C	YSH1	84	42.727	ENSSPUG00000015525	CPSF3	84	42.727	Sphenodon_punctatus
YLR277C	YSH1	85	43.182	ENSSPAG00000002906	CPSF3	86	41.774	Stegastes_partitus
YLR277C	YSH1	97	39.894	ENSSPAG00000018579	cpsf3	95	39.894	Stegastes_partitus
YLR277C	YSH1	84	43.379	ENSSSCG00000020799	CPSF3	84	43.379	Sus_scrofa
YLR277C	YSH1	95	40.403	ENSTGUG00000013016	CPSF3	93	40.403	Taeniopygia_guttata
YLR277C	YSH1	85	41.994	ENSTRUG00000007030	cpsf3	83	41.994	Takifugu_rubripes
YLR277C	YSH1	53	38.983	ENSTTRG00000000861	CPSF3	58	38.983	Tursiops_truncatus
YLR277C	YSH1	84	43.683	ENSUAMG00000007535	CPSF3	83	43.531	Ursus_americanus
YLR277C	YSH1	85	42.296	ENSUMAG00000003676	CPSF3	96	42.296	Ursus_maritimus
YLR277C	YSH1	84	43.598	ENSVPAG00000008041	CPSF3	91	43.598	Vicugna_pacos
YLR277C	YSH1	84	43.531	ENSVVUG00000002194	CPSF3	84	43.531	Vulpes_vulpes
YLR277C	YSH1	90	41.571	ENSXETG00000008263	cpsf3	88	41.571	Xenopus_tropicalis
YLR277C	YSH1	98	38.932	ENSXCOG00000019695	cpsf3	96	38.932	Xiphophorus_couchianus
YLR277C	YSH1	98	38.802	ENSXMAG00000009784	cpsf3	99	38.286	Xiphophorus_maculatus
YLR277C	YSH1	85	43.636	ENSXMAG00000027291	CPSF3	84	43.636	Xiphophorus_maculatus