EuRBPDB

Description

Ensembl ID: YLR388W (Gene tree)
Gene ID: -
Gene Symbol: RPS29A
Alias: -
Full Name: Protein component of the small (40S) ribosomal subunit%3B homologous to mammalian ribosomal protein S29 and bacterial S14%3B RPS29A has a paralog%2C RPS29B%2C that arose from the whole genome duplication
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 171 bases
Position: chrXII:898651-898821
Accession: S000004380
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR388W_mRNA	Ribosomal_S14	PF00253.21	4.9e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR388W_mRNA	-	171	-	YLR388W_mRNA	56 (aa)	-	P41057

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YLR388W	RPS29A	100	91.071	YDL061C	RPS29B	100	91.071

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR388W	RPS29A	98	67.273	WBGene00004498	rps-29	98	67.273	Caenorhabditis_elegans
YLR388W	RPS29A	98	67.273	ENSCING00000010675	-	98	67.273	Ciona_intestinalis
YLR388W	RPS29A	98	70.909	FBgn0261599	RpS29	98	70.909	Drosophila_melanogaster