EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YLR398C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 3864
Position: chrXII:915156-919019
Accession: S000004390
RBP type: canonical RBP
Summary: Ski complex component and putative RNA helicase%3B mediates 3'-5' RNA degradation by the cytoplasmic exosome%3B null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay%3B mutations in the human ortholog%2C SKIV2L%2C causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YLR398C_mRNA	ResIII	PF04851.15	1e-07	1	1
YLR398C_mRNA	rRNA_proc-arch	PF13234.6	4.2e-15	1	1
YLR398C_mRNA	DEAD	PF00270.29	7.6e-21	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YLR398C_mRNA	-	3864	-	YLR398C_mRNA	1287 (aa)	-	P35207

Gene Model

Click here to download YLR398C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YLR398C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YLR398C	-	60	42.930	YJL050W	MTR4	80	38.710

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YLR398C	-	93	37.609	ENSG00000204351	SKIV2L	93	37.530	Homo_sapiens
YLR398C	-	90	39.573	ENSAPOG00000008257	skiv2l	90	39.655	Acanthochromis_polyacanthus
YLR398C	-	93	37.302	ENSAMEG00000002078	SKIV2L	93	37.510	Ailuropoda_melanoleuca
YLR398C	-	84	45.626	ENSACIG00000016719	skiv2l	89	46.172	Amphilophus_citrinellus
YLR398C	-	96	37.714	ENSAOCG00000017352	skiv2l	95	37.904	Amphiprion_ocellaris
YLR398C	-	96	37.714	ENSAPEG00000001055	skiv2l	95	37.904	Amphiprion_percula
YLR398C	-	90	39.652	ENSATEG00000007601	skiv2l	90	39.652	Anabas_testudineus
YLR398C	-	92	39.173	ENSACAG00000011746	SKIV2L	92	39.676	Anolis_carolinensis
YLR398C	-	93	37.628	ENSANAG00000037992	SKIV2L	93	37.549	Aotus_nancymaae
YLR398C	-	77	42.263	ENSACLG00000006886	skiv2l	93	38.523	Astatotilapia_calliptera
YLR398C	-	90	39.242	ENSAMXG00000011517	skiv2l	90	39.539	Astyanax_mexicanus
YLR398C	-	93	37.391	ENSBTAG00000005587	SKIV2L	93	37.311	Bos_taurus
YLR398C	-	93	37.628	ENSCJAG00000002263	SKIV2L	93	37.708	Callithrix_jacchus
YLR398C	-	93	37.520	ENSCAFG00000000679	SKIV2L	93	37.887	Canis_familiaris
YLR398C	-	93	37.520	ENSCAFG00020000948	SKIV2L	93	37.887	Canis_lupus_dingo
YLR398C	-	93	37.291	ENSCHIG00000012897	SKIV2L	93	37.371	Capra_hircus
YLR398C	-	93	37.849	ENSTSYG00000012133	SKIV2L	92	37.862	Carlito_syrichta
YLR398C	-	92	37.892	ENSCPOG00000001307	SKIV2L	92	37.973	Cavia_porcellus
YLR398C	-	93	38.003	ENSCCAG00000026206	SKIV2L	93	37.934	Cebus_capucinus
YLR398C	-	93	37.639	ENSCATG00000036901	SKIV2L	93	37.698	Cercocebus_atys
YLR398C	-	93	38.387	ENSCLAG00000007678	SKIV2L	93	38.207	Chinchilla_lanigera
YLR398C	-	93	37.372	ENSCSAG00000008988	SKIV2L	93	37.510	Chlorocebus_sabaeus
YLR398C	-	64	46.861	ENSCPBG00000000343	SKIV2L	90	46.552	Chrysemys_picta_bellii
YLR398C	-	92	38.681	ENSCING00000005576	-	98	38.718	Ciona_intestinalis
YLR398C	-	93	37.480	ENSCANG00000039709	SKIV2L	94	37.222	Colobus_angolensis_palliatus
YLR398C	-	92	38.512	ENSCGRG00001008385	Skiv2l	92	38.512	Cricetulus_griseus_chok1gshd
YLR398C	-	96	38.323	ENSCSEG00000011326	skiv2l	94	38.636	Cynoglossus_semilaevis
YLR398C	-	93	39.824	ENSCVAG00000003072	skiv2l	94	39.602	Cyprinodon_variegatus
YLR398C	-	90	40.050	ENSDARG00000062206	skiv2l	90	40.050	Danio_rerio
YLR398C	-	84	43.899	ENSDNOG00000037590	SKIV2L	79	43.709	Dasypus_novemcinctus
YLR398C	-	94	35.247	FBgn0039117	tst	98	35.350	Drosophila_melanogaster
YLR398C	-	68	53.571	ENSETEG00000009522	SKIV2L	68	53.571	Echinops_telfairi
YLR398C	-	87	35.868	ENSEBUG00000013680	-	97	35.670	Eptatretus_burgeri
YLR398C	-	93	37.331	ENSEASG00005015534	SKIV2L	99	37.291	Equus_asinus_asinus
YLR398C	-	88	36.772	ENSECAG00000021823	SKIV2L	89	36.728	Equus_caballus
YLR398C	-	51	41.497	ENSEEUG00000005049	SKIV2L	56	41.497	Erinaceus_europaeus
YLR398C	-	90	39.751	ENSELUG00000000181	skiv2l	90	39.485	Esox_lucius
YLR398C	-	93	37.609	ENSFCAG00000004519	SKIV2L	93	37.361	Felis_catus
YLR398C	-	93	37.061	ENSFDAG00000009438	SKIV2L	93	37.141	Fukomys_damarensis
YLR398C	-	96	39.324	ENSFHEG00000008853	skiv2l	98	39.017	Fundulus_heteroclitus
YLR398C	-	90	39.346	ENSGMOG00000005926	skiv2l	90	39.181	Gadus_morhua
YLR398C	-	62	66.120	ENSGALG00000035499	SKIV2L	78	63.184	Gallus_gallus
YLR398C	-	90	40.249	ENSGAFG00000002382	skiv2l	90	39.917	Gambusia_affinis
YLR398C	-	90	39.421	ENSGACG00000002927	skiv2l	90	39.439	Gasterosteus_aculeatus
YLR398C	-	93	37.530	ENSGGOG00000002270	SKIV2L	93	37.451	Gorilla_gorilla
YLR398C	-	93	38.264	ENSHBUG00000000726	skiv2l	93	38.567	Haplochromis_burtoni
YLR398C	-	92	38.492	ENSHGLG00000016596	SKIV2L	92	38.542	Heterocephalus_glaber_female
YLR398C	-	92	38.228	ENSHGLG00100014161	SKIV2L	92	38.279	Heterocephalus_glaber_male
YLR398C	-	77	41.426	ENSHCOG00000007191	skiv2l	82	41.813	Hippocampus_comes
YLR398C	-	90	39.174	ENSIPUG00000016263	skiv2l	91	39.012	Ictalurus_punctatus
YLR398C	-	93	38.084	ENSSTOG00000014596	SKIV2L	93	38.065	Ictidomys_tridecemlineatus
YLR398C	-	93	37.688	ENSLAFG00000014231	SKIV2L	93	37.688	Loxodonta_africana
YLR398C	-	93	37.559	ENSMFAG00000034235	SKIV2L	93	37.619	Macaca_fascicularis
YLR398C	-	93	37.559	ENSMMUG00000000736	SKIV2L	93	37.619	Macaca_mulatta
YLR398C	-	93	37.480	ENSMNEG00000044474	SKIV2L	93	37.540	Macaca_nemestrina
YLR398C	-	93	37.559	ENSMLEG00000030512	SKIV2L	93	37.619	Mandrillus_leucophaeus
YLR398C	-	90	40.232	ENSMAMG00000002927	skiv2l	90	40.149	Mastacembelus_armatus
YLR398C	-	77	42.456	ENSMZEG00005026415	skiv2l	93	38.523	Maylandia_zebra
YLR398C	-	93	37.672	ENSMAUG00000018613	Skiv2l	92	38.018	Mesocricetus_auratus
YLR398C	-	93	37.480	ENSMICG00000046331	SKIV2L	93	37.480	Microcebus_murinus
YLR398C	-	93	36.645	ENSMOCG00000014240	Skiv2l	93	36.645	Microtus_ochrogaster
YLR398C	-	77	42.074	ENSMMOG00000014547	skiv2l	79	42.074	Mola_mola
YLR398C	-	77	41.043	ENSMODG00000015052	SKIV2L	93	37.693	Monodelphis_domestica
YLR398C	-	95	38.260	ENSMALG00000010535	skiv2l	98	38.183	Monopterus_albus
YLR398C	-	95	38.291	MGP_CAROLIEiJ_G0021477	Skiv2l	93	38.528	Mus_caroli
YLR398C	-	95	38.163	ENSMUSG00000040356	Skiv2l	93	38.401	Mus_musculus
YLR398C	-	97	37.910	MGP_PahariEiJ_G0020472	Skiv2l	94	37.910	Mus_pahari
YLR398C	-	95	38.321	MGP_SPRETEiJ_G0022382	Skiv2l	93	38.559	Mus_spretus
YLR398C	-	93	37.827	ENSMPUG00000010567	SKIV2L	93	38.163	Mustela_putorius_furo
YLR398C	-	93	38.264	ENSMLUG00000000628	SKIV2L	93	38.183	Myotis_lucifugus
YLR398C	-	77	41.349	ENSNBRG00000018650	skiv2l	92	37.812	Neolamprologus_brichardi
YLR398C	-	93	38.226	ENSNLEG00000006451	SKIV2L	94	38.226	Nomascus_leucogenys
YLR398C	-	92	37.780	ENSOPRG00000003972	SKIV2L	92	38.023	Ochotona_princeps
YLR398C	-	93	37.669	ENSODEG00000017516	SKIV2L	93	37.589	Octodon_degus
YLR398C	-	78	41.810	ENSONIG00000013500	skiv2l	93	38.598	Oreochromis_niloticus
YLR398C	-	93	38.016	ENSOCUG00000007019	SKIV2L	93	38.016	Oryctolagus_cuniculus
YLR398C	-	85	47.482	ENSORLG00000002021	skiv2l	89	47.368	Oryzias_latipes
YLR398C	-	72	63.095	ENSORLG00020009462	skiv2l	80	63.095	Oryzias_latipes_hni
YLR398C	-	72	63.492	ENSORLG00015016750	skiv2l	79	63.492	Oryzias_latipes_hsok
YLR398C	-	96	37.635	ENSOMEG00000008531	skiv2l	95	37.859	Oryzias_melastigma
YLR398C	-	93	37.788	ENSOGAG00000009578	SKIV2L	93	37.709	Otolemur_garnettii
YLR398C	-	80	41.361	ENSOARG00000002411	-	79	41.361	Ovis_aries
YLR398C	-	93	37.881	ENSPPAG00000040211	SKIV2L	94	37.801	Pan_paniscus
YLR398C	-	93	37.698	ENSPPRG00000005017	SKIV2L	93	37.698	Panthera_pardus
YLR398C	-	93	37.381	ENSPTIG00000021656	SKIV2L	93	37.460	Panthera_tigris_altaica
YLR398C	-	93	37.609	ENSPTRG00000017997	SKIV2L	93	37.530	Pan_troglodytes
YLR398C	-	93	37.163	ENSPANG00000011501	SKIV2L	94	37.063	Papio_anubis
YLR398C	-	90	39.485	ENSPKIG00000011876	skiv2l	90	39.485	Paramormyrops_kingsleyae
YLR398C	-	77	41.602	ENSPMGG00000019707	skiv2l	78	41.675	Periophthalmus_magnuspinnatus
YLR398C	-	93	37.540	ENSPEMG00000019001	Skiv2l	92	37.700	Peromyscus_maniculatus_bairdii
YLR398C	-	77	40.918	ENSPCIG00000018792	SKIV2L	93	37.712	Phascolarctos_cinereus
YLR398C	-	90	40.364	ENSPFOG00000002424	skiv2l	90	40.199	Poecilia_formosa
YLR398C	-	84	49.412	ENSPLAG00000018304	skiv2l	87	48.706	Poecilia_latipinna
YLR398C	-	90	40.381	ENSPMEG00000006997	skiv2l	90	40.116	Poecilia_mexicana
YLR398C	-	77	42.326	ENSPREG00000002277	skiv2l	80	42.326	Poecilia_reticulata
YLR398C	-	93	37.589	ENSPPYG00000016472	SKIV2L	93	37.510	Pongo_abelii
YLR398C	-	68	60.241	ENSPCAG00000004178	SKIV2L	69	60.241	Procavia_capensis
YLR398C	-	93	37.410	ENSPCOG00000010308	SKIV2L	92	37.440	Propithecus_coquereli
YLR398C	-	93	38.054	ENSPVAG00000005136	SKIV2L	93	37.956	Pteropus_vampyrus
YLR398C	-	80	41.106	ENSPNYG00000017853	skiv2l	83	41.461	Pundamilia_nyererei
YLR398C	-	90	39.554	ENSPNAG00000011823	skiv2l	90	39.604	Pygocentrus_nattereri
YLR398C	-	93	38.655	ENSRNOG00000000421	Skiv2l	92	38.694	Rattus_norvegicus
YLR398C	-	93	37.331	ENSRBIG00000035485	SKIV2L	93	37.391	Rhinopithecus_bieti
YLR398C	-	93	37.559	ENSRROG00000036429	SKIV2L	93	37.619	Rhinopithecus_roxellana
YLR398C	-	93	37.559	ENSSBOG00000027920	SKIV2L	93	37.480	Saimiri_boliviensis_boliviensis
YLR398C	-	77	40.522	ENSSHAG00000008963	SKIV2L	93	36.661	Sarcophilus_harrisii
YLR398C	-	89	40.136	ENSSFOG00015016930	skiv2l	90	40.000	Scleropages_formosus
YLR398C	-	96	38.702	ENSSMAG00000020185	skiv2l	99	38.817	Scophthalmus_maximus
YLR398C	-	96	38.106	ENSSDUG00000019977	skiv2l	98	38.628	Seriola_dumerili
YLR398C	-	77	43.508	ENSSLDG00000024382	skiv2l	80	43.508	Seriola_lalandi_dorsalis
YLR398C	-	80	43.026	ENSSPUG00000012945	SKIV2L	79	43.278	Sphenodon_punctatus
YLR398C	-	85	38.535	ENSSPAG00000012904	skiv2l	89	38.342	Stegastes_partitus
YLR398C	-	93	38.306	ENSSSCG00000001424	SKIV2L	99	37.846	Sus_scrofa
YLR398C	-	63	48.499	ENSTRUG00000000966	skiv2l	75	48.499	Takifugu_rubripes
YLR398C	-	77	41.336	ENSTNIG00000004382	skiv2l	89	38.315	Tetraodon_nigroviridis
YLR398C	-	86	35.340	ENSTBEG00000003462	SKIV2L	86	35.340	Tupaia_belangeri
YLR398C	-	84	45.700	ENSTTRG00000005931	SKIV2L	93	35.420	Tursiops_truncatus
YLR398C	-	93	37.381	ENSUAMG00000024336	SKIV2L	93	37.787	Ursus_americanus
YLR398C	-	92	37.460	ENSUMAG00000012666	SKIV2L	99	37.790	Ursus_maritimus
YLR398C	-	93	37.619	ENSVVUG00000022807	SKIV2L	93	37.986	Vulpes_vulpes
YLR398C	-	84	42.562	ENSXETG00000010932	skiv2l	77	42.451	Xenopus_tropicalis
YLR398C	-	90	40.016	ENSXCOG00000019517	skiv2l	88	39.853	Xiphophorus_couchianus
YLR398C	-	90	39.429	ENSXMAG00000014079	skiv2l	90	39.510	Xiphophorus_maculatus